data_DP3 # _chem_comp.id DP3 _chem_comp.name "N-{(4S)-4-AMINO-5-[(2-AMINOETHYL)AMINO]PENTYL}-N'-NITROGUANIDINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H21 N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-05-05 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 247.298 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DP3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1P6I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DP3 "N2'" "N2'" N 0 1 N N N 4.585 2.220 27.520 -8.464 0.668 -0.014 "N2'" DP3 1 DP3 "C2'" "C2'" C 0 1 N N N 5.271 2.260 26.178 -7.318 -0.221 0.217 "C2'" DP3 2 DP3 "C1'" "C1'" C 0 1 N N N 5.620 0.851 25.612 -6.017 0.554 -0.004 "C1'" DP3 3 DP3 "N1'" "N1'" N 0 1 N N N 7.027 0.413 25.875 -4.871 -0.335 0.227 "N1'" DP3 4 DP3 C C C 0 1 N N N 7.578 -0.583 24.924 -3.662 0.467 0.000 C DP3 5 DP3 CA CA C 0 1 N N S 9.132 -0.746 24.984 -2.423 -0.402 0.225 CA DP3 6 DP3 N N N 0 1 N N N 9.442 -2.059 25.625 -2.502 -1.596 -0.627 N DP3 7 DP3 CB CB C 0 1 N N N 9.829 -0.789 23.579 -1.168 0.396 -0.132 CB DP3 8 DP3 CG CG C 0 1 N N N 10.163 0.597 22.998 0.075 -0.428 0.210 CG DP3 9 DP3 CD CD C 0 1 N N N 11.208 1.382 23.813 1.330 0.371 -0.147 CD DP3 10 DP3 NE NE N 0 1 N N N 12.474 0.580 23.970 2.521 -0.418 0.181 NE DP3 11 DP3 CZ CZ C 0 1 N N N 13.545 0.616 23.199 3.773 0.098 -0.054 CZ DP3 12 DP3 NH2 NH2 N 0 1 N N N 14.572 -0.207 23.551 3.902 1.288 -0.568 NH2 DP3 13 DP3 NH1 NH1 N 0 1 N N N 13.563 1.452 22.120 4.890 -0.643 0.253 NH1 DP3 14 DP3 NO NO N 1 1 N N N 14.573 1.413 21.174 6.164 -0.072 0.134 NO DP3 15 DP3 O2 O2 O 0 1 N N N 14.499 2.218 20.185 7.115 -0.764 -0.182 O2 DP3 16 DP3 O3 O3 O -1 1 N N N 15.563 0.620 21.247 6.320 1.117 0.347 O3 DP3 17 DP3 "H2'1" "1H2'" H 0 0 N N N 4.356 3.142 27.890 -8.453 0.906 -0.994 "H2'1" DP3 18 DP3 "H2'2" "2H2'" H 0 0 N N N 5.139 1.689 28.192 -9.294 0.117 0.142 "H2'2" DP3 19 DP3 H11 1H1 H 0 1 N N N 4.665 2.840 25.443 -7.348 -0.596 1.240 H11 DP3 20 DP3 H12 2H1 H 0 1 N N N 6.180 2.903 26.219 -7.363 -1.060 -0.478 H12 DP3 21 DP3 "H1'1" "1H1'" H 0 0 N N N 4.898 0.089 25.989 -5.987 0.928 -1.027 "H1'1" DP3 22 DP3 "H1'2" "2H1'" H 0 0 N N N 5.394 0.802 24.521 -5.972 1.393 0.691 "H1'2" DP3 23 DP3 "H1'" "H1'" H 0 1 N N N 7.110 0.065 26.830 -4.882 -0.573 1.208 "H1'" DP3 24 DP3 H1 1H H 0 1 N N N 7.078 -1.570 25.062 -3.662 0.843 -1.023 H1 DP3 25 DP3 H2 2H H 0 1 N N N 7.252 -0.348 23.883 -3.647 1.307 0.695 H2 DP3 26 DP3 HA HA H 0 1 N N N 9.510 0.141 25.542 -2.376 -0.705 1.271 HA DP3 27 DP3 HN1 1HN H 0 1 N N N 10.455 -2.165 25.664 -3.390 -2.034 -0.432 HN1 DP3 28 DP3 HN2 2HN H 0 1 N N N 8.982 -2.841 25.158 -2.544 -1.270 -1.581 HN2 DP3 29 DP3 HB1 1HB H 0 1 N N N 10.742 -1.427 23.616 -1.172 0.623 -1.198 HB1 DP3 30 DP3 HB2 2HB H 0 1 N N N 9.215 -1.377 22.857 -1.155 1.326 0.437 HB2 DP3 31 DP3 HG1 1HG H 0 1 N N N 10.482 0.508 21.933 0.079 -0.654 1.276 HG1 DP3 32 DP3 HG2 2HG H 0 1 N N N 9.234 1.200 22.866 0.062 -1.358 -0.359 HG2 DP3 33 DP3 HD1 1HD H 0 1 N N N 11.407 2.386 23.371 1.326 0.597 -1.213 HD1 DP3 34 DP3 HD2 2HD H 0 1 N N N 10.802 1.710 24.798 1.343 1.301 0.422 HD2 DP3 35 DP3 HNE HNE H 0 1 N N N 12.184 -0.397 24.002 2.425 -1.304 0.563 HNE DP3 36 DP3 HH2 HH2 H 0 1 N N N 14.422 -1.181 23.287 4.779 1.615 -0.823 HH2 DP3 37 DP3 HH1 HH1 H 0 1 N N N 13.501 2.408 22.468 4.796 -1.561 0.552 HH1 DP3 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DP3 "N2'" "C2'" SING N N 1 DP3 "N2'" "H2'1" SING N N 2 DP3 "N2'" "H2'2" SING N N 3 DP3 "C2'" "C1'" SING N N 4 DP3 "C2'" H11 SING N N 5 DP3 "C2'" H12 SING N N 6 DP3 "C1'" "N1'" SING N N 7 DP3 "C1'" "H1'1" SING N N 8 DP3 "C1'" "H1'2" SING N N 9 DP3 "N1'" C SING N N 10 DP3 "N1'" "H1'" SING N N 11 DP3 C CA SING N N 12 DP3 C H1 SING N N 13 DP3 C H2 SING N N 14 DP3 CA N SING N N 15 DP3 CA CB SING N N 16 DP3 CA HA SING N N 17 DP3 N HN1 SING N N 18 DP3 N HN2 SING N N 19 DP3 CB CG SING N N 20 DP3 CB HB1 SING N N 21 DP3 CB HB2 SING N N 22 DP3 CG CD SING N N 23 DP3 CG HG1 SING N N 24 DP3 CG HG2 SING N N 25 DP3 CD NE SING N N 26 DP3 CD HD1 SING N N 27 DP3 CD HD2 SING N N 28 DP3 NE CZ SING N N 29 DP3 NE HNE SING N N 30 DP3 CZ NH2 DOUB N N 31 DP3 CZ NH1 SING N N 32 DP3 NH2 HH2 SING N N 33 DP3 NH1 NO SING N N 34 DP3 NH1 HH1 SING N N 35 DP3 NO O2 DOUB N N 36 DP3 NO O3 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DP3 SMILES ACDLabs 10.04 "[O-][N+](=O)NC(=[N@H])NCCCC(N)CNCCN" DP3 SMILES_CANONICAL CACTVS 3.341 "NCCNC[C@@H](N)CCCNC(=N)N[N+]([O-])=O" DP3 SMILES CACTVS 3.341 "NCCNC[CH](N)CCCNC(=N)N[N+]([O-])=O" DP3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(C[C@@H](CNCCN)N)CNC(=N)N[N+](=O)[O-]" DP3 SMILES "OpenEye OEToolkits" 1.5.0 "C(CC(CNCCN)N)CNC(=N)N[N+](=O)[O-]" DP3 InChI InChI 1.03 "InChI=1S/C8H21N7O2/c9-3-5-12-6-7(10)2-1-4-13-8(11)14-15(16)17/h7,12H,1-6,9-10H2,(H3,11,13,14)/t7-/m0/s1" DP3 InChIKey InChI 1.03 RMSWBHUVFNFNIZ-ZETCQYMHSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DP3 "SYSTEMATIC NAME" ACDLabs 10.04 "1-{(4S)-4-amino-5-[(2-aminoethyl)amino]pentyl}-3-nitroguanidine" DP3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-[(4S)-4-amino-5-(2-aminoethylamino)pentyl]-3-nitro-guanidine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DP3 "Create component" 2003-05-05 RCSB DP3 "Modify descriptor" 2011-06-04 RCSB #