data_DP7 # _chem_comp.id DP7 _chem_comp.name "AC-(D)PHE-PRO-BOROARG-OH" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H33 B N6 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 460.335 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DP7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1LHC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DP7 C1 C1 C 0 1 N N R N N N 14.920 -11.605 19.624 -0.588 0.287 -3.111 C1 DP7 1 DP7 B2 B2 B 0 1 N N N N N N 15.152 -10.778 18.321 -1.566 1.444 -3.523 B2 DP7 2 DP7 C3 C3 C 0 1 N N N N N N 13.868 -10.977 20.578 -0.291 -0.588 -4.330 C3 DP7 3 DP7 C4 C4 C 0 1 N N N N N N 13.024 -11.960 21.387 0.357 0.263 -5.423 C4 DP7 4 DP7 C5 C5 C 0 1 N N N N N N 12.460 -11.372 22.658 0.655 -0.612 -6.642 C5 DP7 5 DP7 C6 C6 C 0 1 N N N N N N 10.687 -12.055 24.408 1.634 -0.371 -8.886 C6 DP7 6 DP7 C7 C7 C 0 1 N N S N N N 18.149 -13.130 21.224 -1.663 -1.051 0.309 C7 DP7 7 DP7 C8 C8 C 0 1 N N N N N N 16.813 -12.965 20.430 -1.024 -0.213 -0.767 C8 DP7 8 DP7 C9 C9 C 0 1 N N N N N N 19.361 -13.057 20.279 -3.199 -1.007 0.167 C9 DP7 9 DP7 C10 C10 C 0 1 N N N N N N 20.042 -14.422 20.284 -3.686 -0.966 1.639 C10 DP7 10 DP7 C11 C11 C 0 1 N N N N N N 19.481 -15.175 21.410 -2.582 -0.109 2.308 C11 DP7 11 DP7 C12 C12 C 0 1 N N N N N N 17.453 -14.893 22.866 -0.093 -0.404 2.154 C12 DP7 12 DP7 C13 C13 C 0 1 N N N N N N 18.153 -16.147 25.063 0.044 -0.950 4.569 C13 DP7 13 DP7 C14 C14 C 0 1 N N R N N N 17.610 -16.278 23.595 0.100 0.173 3.532 C14 DP7 14 DP7 C15 C15 C 0 1 N N N N N N 15.802 -17.859 22.886 2.531 0.138 3.384 C15 DP7 15 DP7 C16 C16 C 0 1 N N N N N N 14.344 -18.279 23.107 3.871 0.824 3.457 C16 DP7 16 DP7 C17 C17 C 0 1 Y N N N N N 21.952 -15.683 24.623 1.687 0.270 7.742 C17 DP7 17 DP7 C18 C18 C 0 1 Y N N N N N 22.202 -14.566 25.420 0.592 0.688 8.476 C18 DP7 18 DP7 C19 C19 C 0 1 Y N N N N N 21.159 -13.976 26.102 -0.678 0.576 7.946 C19 DP7 19 DP7 C20 C20 C 0 1 Y N N N N N 19.853 -14.467 25.980 -0.856 0.045 6.682 C20 DP7 20 DP7 C21 C21 C 0 1 Y N N N N N 19.589 -15.582 25.185 0.238 -0.371 5.947 C21 DP7 21 DP7 C22 C22 C 0 1 Y N N N N N 20.657 -16.208 24.498 1.509 -0.264 6.480 C22 DP7 22 DP7 N1 N1 N 0 1 N N N N N N 16.206 -11.767 20.380 -1.209 -0.527 -2.064 N1 DP7 23 DP7 N2 N2 N 0 1 N N N N N N 11.632 -12.334 23.395 1.276 0.202 -7.689 N2 DP7 24 DP7 N3 N3 N 0 1 N N N N N N 9.948 -12.974 24.834 2.217 0.393 -9.868 N3 DP7 25 DP7 N4 N4 N 0 1 N N N N N N 10.554 -10.749 24.957 1.421 -1.641 -9.089 N4 DP7 26 DP7 N5 N5 N 0 1 N N N N N N 18.314 -14.444 21.917 -1.333 -0.514 1.637 N5 DP7 27 DP7 N6 N6 N 0 1 N N N N N N 16.240 -16.849 23.665 1.402 0.840 3.604 N6 DP7 28 DP7 O1 O1 O 0 1 N N N N N N 16.312 -11.019 17.508 -2.850 1.135 -4.045 O1 DP7 29 DP7 O2 O2 O 0 1 N N N N N N 14.040 -10.647 17.329 -1.167 2.798 -3.374 O2 DP7 30 DP7 O3 O3 O 0 1 N N N N N N 16.348 -13.961 19.864 -0.343 0.744 -0.466 O3 DP7 31 DP7 O4 O4 O 0 1 N N N N N N 16.482 -14.191 23.209 0.866 -0.771 1.510 O4 DP7 32 DP7 O5 O5 O 0 1 N N N N N N 16.513 -18.438 22.050 2.469 -1.045 3.127 O5 DP7 33 DP7 H1 H1 H 0 1 N N N N N N 14.527 -12.592 19.285 0.341 0.714 -2.735 H1 DP7 34 DP7 H31 1H3 H 0 1 N N N N N N 14.365 -10.252 21.263 0.388 -1.391 -4.044 H31 DP7 35 DP7 H32 2H3 H 0 1 N N N N N N 13.202 -10.288 20.006 -1.220 -1.015 -4.706 H32 DP7 36 DP7 H41 1H4 H 0 1 N N N N N N 12.210 -12.390 20.757 -0.321 1.066 -5.710 H41 DP7 37 DP7 H42 2H4 H 0 1 N N N N N N 13.602 -12.888 21.605 1.287 0.690 -5.047 H42 DP7 38 DP7 H51 1H5 H 0 1 N N N N N N 13.268 -10.958 23.304 1.334 -1.415 -6.356 H51 DP7 39 DP7 H52 2H5 H 0 1 N N N N N N 11.898 -10.431 22.452 -0.274 -1.039 -7.018 H52 DP7 40 DP7 H7 H7 H 0 1 N N N N N N 18.099 -12.304 21.972 -1.313 -2.081 0.234 H7 DP7 41 DP7 H91 1H9 H 0 1 N N N N N N 19.089 -12.713 19.253 -3.568 -1.902 -0.335 H91 DP7 42 DP7 H92 2H9 H 0 1 N N N N N N 20.058 -12.225 20.534 -3.508 -0.109 -0.366 H92 DP7 43 DP7 H101 1H10 H 0 0 N N N N N N 19.955 -14.959 19.310 -3.718 -1.967 2.069 H101 DP7 44 DP7 H102 2H10 H 0 0 N N N N N N 21.154 -14.356 20.311 -4.658 -0.478 1.715 H102 DP7 45 DP7 H111 1H11 H 0 0 N N N N N N 19.243 -16.231 21.144 -2.528 -0.326 3.374 H111 DP7 46 DP7 H112 2H11 H 0 0 N N N N N N 20.234 -15.384 22.204 -2.774 0.951 2.144 H112 DP7 47 DP7 H131 1H13 H 0 0 N N N N N N 17.448 -15.542 25.680 -0.924 -1.446 4.516 H131 DP7 48 DP7 H132 2H13 H 0 0 N N N N N N 18.080 -17.127 25.588 0.834 -1.672 4.364 H132 DP7 49 DP7 H14 H14 H 0 1 N N N N N N 18.341 -16.905 23.034 -0.689 0.896 3.737 H14 DP7 50 DP7 H161 1H16 H 0 0 N N N N N N 13.981 -19.114 22.462 4.661 0.101 3.253 H161 DP7 51 DP7 H162 2H16 H 0 0 N N N N N N 14.176 -18.525 24.181 3.911 1.624 2.719 H162 DP7 52 DP7 H163 3H16 H 0 0 N N N N N N 13.672 -17.395 23.000 4.011 1.242 4.454 H163 DP7 53 DP7 H17 H17 H 0 1 N N N N N N 22.789 -16.157 24.084 2.680 0.358 8.156 H17 DP7 54 DP7 H18 H18 H 0 1 N N N N N N 23.220 -14.151 25.510 0.731 1.103 9.463 H18 DP7 55 DP7 H19 H19 H 0 1 N N N N N N 21.370 -13.107 26.748 -1.533 0.903 8.519 H19 DP7 56 DP7 H20 H20 H 0 1 N N N N N N 19.025 -13.971 26.514 -1.849 -0.041 6.267 H20 DP7 57 DP7 H22 H22 H 0 1 N N N N N N 20.481 -17.097 23.870 2.364 -0.591 5.906 H22 DP7 58 DP7 HN1 HN1 H 0 1 N N N N N N 16.691 -11.025 20.885 -1.754 -1.293 -2.305 HN1 DP7 59 DP7 HN2 HN2 H 0 1 N N N N N N 12.280 -13.011 23.796 1.434 1.147 -7.538 HN2 DP7 60 DP7 HN31 1HN3 H 0 0 N N N N N N 9.265 -12.772 25.565 2.470 -0.012 -10.712 HN31 DP7 61 DP7 HN32 2HN3 H 0 0 N N N N N N 10.536 -13.748 25.142 2.376 1.337 -9.717 HN32 DP7 62 DP7 HN4 HN4 H 0 1 N N N N N N 11.317 -10.198 24.563 1.674 -2.047 -9.933 HN4 DP7 63 DP7 HN6 HN6 H 0 1 N N N N N N 15.527 -16.513 24.313 1.452 1.787 3.810 HN6 DP7 64 DP7 HO1 HO1 H 0 1 N N N N N N 16.453 -10.515 16.714 -3.285 1.978 -4.232 HO1 DP7 65 DP7 HO2 HO2 H 0 1 N N N N N N 14.181 -10.143 16.535 -0.272 2.787 -3.008 HO2 DP7 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DP7 C1 B2 SING N N 1 DP7 C1 C3 SING N N 2 DP7 C1 N1 SING N N 3 DP7 C1 H1 SING N N 4 DP7 B2 O1 SING N N 5 DP7 B2 O2 SING N N 6 DP7 C3 C4 SING N N 7 DP7 C3 H31 SING N N 8 DP7 C3 H32 SING N N 9 DP7 C4 C5 SING N N 10 DP7 C4 H41 SING N N 11 DP7 C4 H42 SING N N 12 DP7 C5 N2 SING N N 13 DP7 C5 H51 SING N N 14 DP7 C5 H52 SING N N 15 DP7 C6 N2 SING N N 16 DP7 C6 N3 SING N N 17 DP7 C6 N4 DOUB N Z 18 DP7 C7 C8 SING N N 19 DP7 C7 C9 SING N N 20 DP7 C7 N5 SING N N 21 DP7 C7 H7 SING N N 22 DP7 C8 N1 SING N N 23 DP7 C8 O3 DOUB N N 24 DP7 C9 C10 SING N N 25 DP7 C9 H91 SING N N 26 DP7 C9 H92 SING N N 27 DP7 C10 C11 SING N N 28 DP7 C10 H101 SING N N 29 DP7 C10 H102 SING N N 30 DP7 C11 N5 SING N N 31 DP7 C11 H111 SING N N 32 DP7 C11 H112 SING N N 33 DP7 C12 C14 SING N N 34 DP7 C12 N5 SING N N 35 DP7 C12 O4 DOUB N N 36 DP7 C13 C14 SING N N 37 DP7 C13 C21 SING N N 38 DP7 C13 H131 SING N N 39 DP7 C13 H132 SING N N 40 DP7 C14 N6 SING N N 41 DP7 C14 H14 SING N N 42 DP7 C15 C16 SING N N 43 DP7 C15 N6 SING N N 44 DP7 C15 O5 DOUB N N 45 DP7 C16 H161 SING N N 46 DP7 C16 H162 SING N N 47 DP7 C16 H163 SING N N 48 DP7 C17 C18 DOUB Y N 49 DP7 C17 C22 SING Y N 50 DP7 C17 H17 SING N N 51 DP7 C18 C19 SING Y N 52 DP7 C18 H18 SING N N 53 DP7 C19 C20 DOUB Y N 54 DP7 C19 H19 SING N N 55 DP7 C20 C21 SING Y N 56 DP7 C20 H20 SING N N 57 DP7 C21 C22 DOUB Y N 58 DP7 C22 H22 SING N N 59 DP7 N1 HN1 SING N N 60 DP7 N2 HN2 SING N N 61 DP7 N3 HN31 SING N N 62 DP7 N3 HN32 SING N N 63 DP7 N4 HN4 SING N N 64 DP7 N6 HN6 SING N N 65 DP7 O1 HO1 SING N N 66 DP7 O2 HO2 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DP7 SMILES ACDLabs 10.04 "O=C(NC(B(O)O)CCCNC(=[N@H])N)C2N(C(=O)C(NC(=O)C)Cc1ccccc1)CCC2" DP7 SMILES_CANONICAL CACTVS 3.341 "CC(=O)N[C@H](Cc1ccccc1)C(=O)N2CCC[C@H]2C(=O)N[C@@H](CCCNC(N)=N)B(O)O" DP7 SMILES CACTVS 3.341 "CC(=O)N[CH](Cc1ccccc1)C(=O)N2CCC[CH]2C(=O)N[CH](CCCNC(N)=N)B(O)O" DP7 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[H]/N=C(/N)\NCCC[C@@H](B(O)O)NC(=O)[C@@H]1CCCN1C(=O)[C@@H](Cc2ccccc2)NC(=O)C" DP7 SMILES "OpenEye OEToolkits" 1.5.0 "[H]N=C(N)NCCCC(B(O)O)NC(=O)C1CCCN1C(=O)C(Cc2ccccc2)NC(=O)C" DP7 InChI InChI 1.03 "InChI=1S/C21H33BN6O5/c1-14(29)26-16(13-15-7-3-2-4-8-15)20(31)28-12-6-9-17(28)19(30)27-18(22(32)33)10-5-11-25-21(23)24/h2-4,7-8,16-18,32-33H,5-6,9-13H2,1H3,(H,26,29)(H,27,30)(H4,23,24,25)/t16-,17+,18+/m1/s1" DP7 InChIKey InChI 1.03 FXFYPTZERULUBS-SQNIBIBYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DP7 "SYSTEMATIC NAME" ACDLabs 10.04 "N-acetyl-D-phenylalanyl-N-[(1R)-4-carbamimidamido-1-(dihydroxyboranyl)butyl]-L-prolinamide" DP7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(1R)-1-[[(2S)-1-[(2R)-2-acetamido-3-phenyl-propanoyl]pyrrolidin-2-yl]carbonylamino]-4-carbamimidamido-butyl]boronic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DP7 "Create component" 1999-07-08 RCSB DP7 "Modify descriptor" 2011-06-04 RCSB DP7 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id DP7 _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom B2 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #