data_DP9 # _chem_comp.id DP9 _chem_comp.name "L-N(OMEGA)-NITROARGININE-(4R)-AMINO-L-PROLINE AMIDE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H22 N8 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-05-06 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 330.344 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DP9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1P6J _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DP9 NH2 NH2 N 0 1 N N N 14.617 -0.311 23.832 -5.179 -1.160 -1.088 NH2 DP9 1 DP9 CZ CZ C 0 1 N N N 13.683 0.518 23.367 -5.320 -0.358 -0.070 CZ DP9 2 DP9 NH1 NH1 N 0 1 N N N 13.849 1.225 22.243 -6.540 -0.246 0.553 NH1 DP9 3 DP9 NO NO N 1 1 N N N 14.862 1.260 21.347 -7.598 -1.085 0.178 NO DP9 4 DP9 O2 O2 O -1 1 N N N 14.725 2.030 20.328 -7.370 -2.220 -0.200 O2 DP9 5 DP9 O3 O3 O 0 1 N N N 15.874 0.607 21.455 -8.745 -0.678 0.229 O3 DP9 6 DP9 NE NE N 0 1 N N N 12.566 0.605 24.085 -4.248 0.375 0.381 NE DP9 7 DP9 CD CD C 0 1 N N N 11.338 1.401 23.885 -2.947 0.255 -0.282 CD DP9 8 DP9 CG CG C 0 1 N N N 10.264 0.556 23.169 -1.935 1.170 0.410 CG DP9 9 DP9 CB CB C 0 1 N N N 10.069 -0.850 23.795 -0.577 1.045 -0.283 CB DP9 10 DP9 CA CA C 0 1 N N S 9.372 -0.847 25.180 0.435 1.960 0.410 CA DP9 11 DP9 N N N 0 1 N N N 9.728 -2.121 25.823 0.033 3.361 0.228 N DP9 12 DP9 C C C 0 1 N N N 7.834 -0.670 25.093 1.800 1.746 -0.193 C DP9 13 DP9 O O O 0 1 N N N 7.102 -1.642 24.862 2.227 2.525 -1.019 O DP9 14 DP9 "N2'" "N2'" N 0 1 N N N 7.367 0.577 25.267 2.546 0.690 0.186 "N2'" DP9 15 DP9 "CG'" "CG'" C 0 1 N N R 5.904 0.985 25.284 3.873 0.482 -0.400 "CG'" DP9 16 DP9 "CD'" "CD'" C 0 1 N N N 5.066 0.346 26.438 4.942 1.247 0.410 "CD'" DP9 17 DP9 "N'" "N'" N 0 1 N N N 5.157 1.359 27.517 6.127 0.351 0.404 "N'" DP9 18 DP9 "CA'" "CA'" C 0 1 N N S 5.545 2.679 27.003 5.557 -1.011 0.567 "CA'" DP9 19 DP9 "C'" "C'" C 0 1 N N N 4.553 3.789 27.384 6.526 -2.050 0.065 "C'" DP9 20 DP9 "O'" "O'" O 0 1 N N N 3.414 3.540 27.778 7.427 -1.729 -0.682 "O'" DP9 21 DP9 "N1'" "N1'" N 0 1 N N N 4.887 5.064 27.300 6.393 -3.336 0.446 "N1'" DP9 22 DP9 "CB'" "CB'" C 0 1 N N N 5.695 2.490 25.488 4.276 -1.003 -0.299 "CB'" DP9 23 DP9 HH2 HH2 H 0 1 N N N 14.424 -1.247 23.476 -5.954 -1.604 -1.466 HH2 DP9 24 DP9 HH1 HH1 H 0 1 N N N 13.726 2.196 22.530 -6.669 0.414 1.253 HH1 DP9 25 DP9 HNE HNE H 0 1 N N N 12.881 0.848 25.023 -4.353 0.972 1.139 HNE DP9 26 DP9 HD1 1HD H 0 1 N N N 10.959 1.830 24.842 -3.045 0.547 -1.328 HD1 DP9 27 DP9 HD2 2HD H 0 1 N N N 11.543 2.355 23.346 -2.603 -0.777 -0.224 HD2 DP9 28 DP9 HG1 1HG H 0 1 N N N 9.295 1.105 23.121 -1.838 0.878 1.456 HG1 DP9 29 DP9 HG2 2HG H 0 1 N N N 10.484 0.476 22.079 -2.279 2.203 0.352 HG2 DP9 30 DP9 HB1 1HB H 0 1 N N N 9.523 -1.517 23.087 -0.675 1.337 -1.329 HB1 DP9 31 DP9 HB2 2HB H 0 1 N N N 11.044 -1.387 23.852 -0.233 0.013 -0.225 HB2 DP9 32 DP9 HA HA H 0 1 N N N 9.720 0.029 25.775 0.467 1.726 1.474 HA DP9 33 DP9 HN1 1HN H 0 1 N N N 9.269 -2.119 26.734 0.777 3.928 0.607 HN1 DP9 34 DP9 HN2 2HN H 0 1 N N N 10.734 -2.281 25.875 0.017 3.532 -0.767 HN2 DP9 35 DP9 "H2'" "H2'" H 0 1 N N N 8.141 1.229 25.389 2.205 0.067 0.847 "H2'" DP9 36 DP9 "HG'" "HG'" H 0 1 N N N 5.565 0.630 24.282 3.882 0.808 -1.440 "HG'" DP9 37 DP9 "HD'1" "1HD'" H 0 0 N N N 4.026 0.060 26.154 5.179 2.195 -0.073 "HD'1" DP9 38 DP9 "HD'2" "2HD'" H 0 0 N N N 5.388 -0.679 26.734 4.598 1.414 1.431 "HD'2" DP9 39 DP9 "HN'" "HN'" H 0 1 N N N 5.784 1.052 28.260 6.647 0.551 1.245 "HN'" DP9 40 DP9 "HA'" "HA'" H 0 1 N N N 6.498 3.031 27.460 5.309 -1.196 1.612 "HA'" DP9 41 DP9 "H1'1" "1H1'" H 0 0 N N N 5.831 5.270 26.973 5.673 -3.592 1.043 "H1'1" DP9 42 DP9 "H1'2" "2H1'" H 0 0 N N N 4.228 5.800 27.552 7.016 -4.005 0.123 "H1'2" DP9 43 DP9 "HB'1" "1HB'" H 0 0 N N N 6.495 3.119 25.034 3.487 -1.577 0.187 "HB'1" DP9 44 DP9 "HB'2" "2HB'" H 0 0 N N N 4.847 2.909 24.897 4.486 -1.408 -1.289 "HB'2" DP9 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DP9 NH2 CZ DOUB N N 1 DP9 NH2 HH2 SING N N 2 DP9 CZ NH1 SING N N 3 DP9 CZ NE SING N N 4 DP9 NH1 NO SING N N 5 DP9 NH1 HH1 SING N N 6 DP9 NO O2 SING N N 7 DP9 NO O3 DOUB N N 8 DP9 NE CD SING N N 9 DP9 NE HNE SING N N 10 DP9 CD CG SING N N 11 DP9 CD HD1 SING N N 12 DP9 CD HD2 SING N N 13 DP9 CG CB SING N N 14 DP9 CG HG1 SING N N 15 DP9 CG HG2 SING N N 16 DP9 CB CA SING N N 17 DP9 CB HB1 SING N N 18 DP9 CB HB2 SING N N 19 DP9 CA N SING N N 20 DP9 CA C SING N N 21 DP9 CA HA SING N N 22 DP9 N HN1 SING N N 23 DP9 N HN2 SING N N 24 DP9 C O DOUB N N 25 DP9 C "N2'" SING N N 26 DP9 "N2'" "CG'" SING N N 27 DP9 "N2'" "H2'" SING N N 28 DP9 "CG'" "CD'" SING N N 29 DP9 "CG'" "CB'" SING N N 30 DP9 "CG'" "HG'" SING N N 31 DP9 "CD'" "N'" SING N N 32 DP9 "CD'" "HD'1" SING N N 33 DP9 "CD'" "HD'2" SING N N 34 DP9 "N'" "CA'" SING N N 35 DP9 "N'" "HN'" SING N N 36 DP9 "CA'" "C'" SING N N 37 DP9 "CA'" "CB'" SING N N 38 DP9 "CA'" "HA'" SING N N 39 DP9 "C'" "O'" DOUB N N 40 DP9 "C'" "N1'" SING N N 41 DP9 "N1'" "H1'1" SING N N 42 DP9 "N1'" "H1'2" SING N N 43 DP9 "CB'" "HB'1" SING N N 44 DP9 "CB'" "HB'2" SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DP9 SMILES ACDLabs 10.04 "O=C(NC1CC(C(=O)N)NC1)C(N)CCCNC(=[N@H])N[N+]([O-])=O" DP9 SMILES_CANONICAL CACTVS 3.341 "N[C@@H](CCCNC(=N)N[N+]([O-])=O)C(=O)N[C@H]1CN[C@@H](C1)C(N)=O" DP9 SMILES CACTVS 3.341 "N[CH](CCCNC(=N)N[N+]([O-])=O)C(=O)N[CH]1CN[CH](C1)C(N)=O" DP9 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@H](CN[C@@H]1C(=O)N)NC(=O)[C@H](CCCNC(=N)N[N+](=O)[O-])N" DP9 SMILES "OpenEye OEToolkits" 1.5.0 "C1C(CNC1C(=O)N)NC(=O)C(CCCNC(=N)N[N+](=O)[O-])N" DP9 InChI InChI 1.03 "InChI=1S/C11H22N8O4/c12-7(2-1-3-15-11(14)18-19(22)23)10(21)17-6-4-8(9(13)20)16-5-6/h6-8,16H,1-5,12H2,(H2,13,20)(H,17,21)(H3,14,15,18)/t6-,7+,8+/m1/s1" DP9 InChIKey InChI 1.03 IUFRDGFKAVLPFZ-CSMHCCOUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DP9 "SYSTEMATIC NAME" ACDLabs 10.04 "(4R)-4-{[N~5~-(N-nitrocarbamimidoyl)-L-ornithyl]amino}-L-prolinamide" DP9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,4R)-4-[[(2S)-2-amino-5-[(N-nitrocarbamimidoyl)amino]pentanoyl]amino]pyrrolidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DP9 "Create component" 2003-05-06 RCSB DP9 "Modify descriptor" 2011-06-04 RCSB #