data_DPE # _chem_comp.id DPE _chem_comp.name "N-UNDECANYLPHOSPHONATE METHYL ESTER GROUP" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H27 O2 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 234.315 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DPE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1XZM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DPE C1 C1 C 0 1 N N N N N N 9.920 54.556 16.458 2.956 8.033 7.828 C1 DPE 1 DPE C2 C2 C 0 1 N N N N N N 9.752 53.186 15.817 2.956 6.649 7.191 C2 DPE 2 DPE C3 C3 C 0 1 N N N N N N 10.619 53.014 14.582 2.880 6.675 5.664 C3 DPE 3 DPE C4 C4 C 0 1 N N N N N N 11.953 52.363 14.920 2.957 5.285 5.029 C4 DPE 4 DPE C5 C5 C 0 1 N N N N N N 11.874 50.852 14.836 2.948 5.372 3.501 C5 DPE 5 DPE C6 C6 C 0 1 N N N N N N 13.231 50.241 14.530 2.994 3.981 2.864 C6 DPE 6 DPE C7 C7 C 0 1 N N N N N N 13.722 49.373 15.676 2.951 4.071 1.337 C7 DPE 7 DPE C8 C8 C 0 1 N N N N N N 15.070 48.735 15.359 3.017 2.706 0.645 C8 DPE 8 DPE C9 C9 C 0 1 N N N N N N 16.161 49.784 15.176 3.049 2.799 -0.882 C9 DPE 9 DPE C10 C10 C 0 1 N N N N N N 17.505 49.140 14.869 3.102 1.410 -1.520 C10 DPE 10 DPE C11 C11 C 0 1 N N N N N N 17.943 49.483 13.459 3.102 1.494 -3.038 C11 DPE 11 DPE P P P 0 1 N N R N N N 8.803 54.957 17.570 1.462 8.968 7.414 P DPE 12 DPE O1P O1P O 0 1 N N N N N N 8.490 53.602 18.332 0.310 8.419 8.215 O1P DPE 13 DPE O2P O2P O 0 1 N N N N N N 9.326 56.068 18.633 1.867 10.452 7.942 O2P DPE 14 DPE CM CM C 0 1 N N N N N N 9.561 57.427 18.282 3.048 11.058 7.446 CM DPE 15 DPE H11 1H1 H 0 1 N N N N N N 10.941 54.648 16.894 3.011 7.953 8.918 H11 DPE 16 DPE H12 2H1 H 0 1 N N N N N N 9.969 55.341 15.668 3.814 8.620 7.488 H12 DPE 17 DPE H21 1H2 H 0 1 N N N N N N 9.938 52.371 16.555 2.126 6.060 7.600 H21 DPE 18 DPE H22 2H2 H 0 1 N N N N N N 8.680 52.978 15.588 3.874 6.128 7.488 H22 DPE 19 DPE H31 1H3 H 0 1 N N N N N N 10.082 52.451 13.782 1.955 7.174 5.350 H31 DPE 20 DPE H32 2H3 H 0 1 N N N N N N 10.762 53.981 14.046 3.711 7.286 5.291 H32 DPE 21 DPE H41 1H4 H 0 1 N N N N N N 12.774 52.763 14.282 3.872 4.779 5.362 H41 DPE 22 DPE H42 2H4 H 0 1 N N N N N N 12.328 52.696 15.915 2.109 4.674 5.358 H42 DPE 23 DPE H51 1H5 H 0 1 N N N N N N 11.428 50.414 15.759 3.810 5.960 3.162 H51 DPE 24 DPE H52 2H5 H 0 1 N N N N N N 11.103 50.523 14.100 2.046 5.899 3.169 H52 DPE 25 DPE H61 1H6 H 0 1 N N N N N N 13.216 49.677 13.568 2.145 3.393 3.230 H61 DPE 26 DPE H62 2H6 H 0 1 N N N N N N 13.979 51.022 14.260 3.908 3.464 3.177 H62 DPE 27 DPE H71 1H7 H 0 1 N N N N N N 13.756 49.943 16.633 2.043 4.600 1.021 H71 DPE 28 DPE H72 2H7 H 0 1 N N N N N N 12.964 48.605 15.959 3.802 4.670 0.990 H72 DPE 29 DPE H81 1H8 H 0 1 N N N N N N 15.355 47.982 16.130 3.922 2.192 0.991 H81 DPE 30 DPE H82 2H8 H 0 1 N N N N N N 15.002 48.060 14.474 2.165 2.092 0.961 H82 DPE 31 DPE H91 1H9 H 0 1 N N N N N N 15.880 50.533 14.400 3.924 3.381 -1.197 H91 DPE 32 DPE H92 2H9 H 0 1 N N N N N N 16.225 50.464 16.057 2.160 3.326 -1.246 H92 DPE 33 DPE H101 1H10 H 0 0 N N N N N N 18.279 49.413 15.623 4.005 0.882 -1.190 H101 DPE 34 DPE H102 2H10 H 0 0 N N N N N N 17.487 48.038 15.042 2.241 0.817 -1.192 H102 DPE 35 DPE H111 1H11 H 0 0 N N N N N N 18.927 49.011 13.234 2.196 1.987 -3.404 H111 DPE 36 DPE H112 2H11 H 0 0 N N N N N N 17.168 49.209 12.704 3.970 2.055 -3.400 H112 DPE 37 DPE H113 3H11 H 0 0 N N N N N N 17.960 50.584 13.285 3.141 0.490 -3.473 H113 DPE 38 DPE HM1 1HM H 0 1 N N N N N N 9.920 58.189 19.011 3.367 10.546 6.535 HM1 DPE 39 DPE HM2 2HM H 0 1 N N N N N N 10.268 57.431 17.420 3.833 11.001 8.203 HM2 DPE 40 DPE HM3 3HM H 0 1 N N N N N N 8.623 57.819 17.823 2.840 12.107 7.218 HM3 DPE 41 DPE HP1 HP1 H 0 1 N N N N N N 7.671 55.539 16.940 1.322 9.160 6.025 HP1 DPE 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DPE C1 C2 SING N N 1 DPE C1 P SING N N 2 DPE C1 H11 SING N N 3 DPE C1 H12 SING N N 4 DPE C2 C3 SING N N 5 DPE C2 H21 SING N N 6 DPE C2 H22 SING N N 7 DPE C3 C4 SING N N 8 DPE C3 H31 SING N N 9 DPE C3 H32 SING N N 10 DPE C4 C5 SING N N 11 DPE C4 H41 SING N N 12 DPE C4 H42 SING N N 13 DPE C5 C6 SING N N 14 DPE C5 H51 SING N N 15 DPE C5 H52 SING N N 16 DPE C6 C7 SING N N 17 DPE C6 H61 SING N N 18 DPE C6 H62 SING N N 19 DPE C7 C8 SING N N 20 DPE C7 H71 SING N N 21 DPE C7 H72 SING N N 22 DPE C8 C9 SING N N 23 DPE C8 H81 SING N N 24 DPE C8 H82 SING N N 25 DPE C9 C10 SING N N 26 DPE C9 H91 SING N N 27 DPE C9 H92 SING N N 28 DPE C10 C11 SING N N 29 DPE C10 H101 SING N N 30 DPE C10 H102 SING N N 31 DPE C11 H111 SING N N 32 DPE C11 H112 SING N N 33 DPE C11 H113 SING N N 34 DPE P O1P DOUB N N 35 DPE P O2P SING N N 36 DPE O2P CM SING N N 37 DPE CM HM1 SING N N 38 DPE CM HM2 SING N N 39 DPE CM HM3 SING N N 40 DPE HP1 P SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DPE SMILES ACDLabs 10.04 "O=P(OC)CCCCCCCCCCC" DPE SMILES_CANONICAL CACTVS 3.341 "CCCCCCCCCCC[P@@H](=O)OC" DPE SMILES CACTVS 3.341 "CCCCCCCCCCC[PH](=O)OC" DPE SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCCC[P@@H](=O)OC" DPE SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCCCP(=O)OC" DPE InChI InChI 1.03 "InChI=1S/C12H27O2P/c1-3-4-5-6-7-8-9-10-11-12-15(13)14-2/h15H,3-12H2,1-2H3" DPE InChIKey InChI 1.03 FYHIOSOXVZDSJI-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DPE "SYSTEMATIC NAME" ACDLabs 10.04 "methyl (S)-undecylphosphinate" DPE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 1-methoxyphosphonoylundecane # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DPE "Create component" 1999-07-08 RCSB DPE "Modify descriptor" 2011-06-04 RCSB DPE "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id DPE _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom P _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? _pdbx_chem_comp_pcm.first_instance_model_db_code 1XZM #