data_DPN # _chem_comp.id DPN _chem_comp.name D-PHENYLALANINE _chem_comp.type "D-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H11 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 165.189 _chem_comp.one_letter_code F _chem_comp.three_letter_code DPN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DPN N N N 0 1 N N N Y Y N 34.692 5.147 11.886 -1.074 1.447 0.824 N DPN 1 DPN CA CA C 0 1 N N R Y N N 34.648 5.692 10.509 -1.289 0.054 0.411 CA DPN 2 DPN C C C 0 1 N N N Y N Y 33.882 7.017 10.467 -2.740 -0.147 0.057 C DPN 3 DPN O O O 0 1 N N N Y N Y 33.561 7.596 11.514 -3.434 0.805 -0.213 O DPN 4 DPN OXT OXT O 0 1 N Y N Y N Y 33.600 7.485 9.254 -3.263 -1.383 0.041 OXT DPN 5 DPN CB CB C 0 1 N N N N N N 36.067 5.886 9.998 -0.419 -0.257 -0.809 CB DPN 6 DPN CG CG C 0 1 Y N N N N N 36.930 6.703 10.909 1.035 -0.176 -0.422 CG DPN 7 DPN CD1 CD1 C 0 1 Y N N N N N 37.767 6.083 11.827 1.690 -1.300 0.042 CD1 DPN 8 DPN CD2 CD2 C 0 1 Y N N N N N 36.921 8.095 10.838 1.715 1.023 -0.537 CD2 DPN 9 DPN CE1 CE1 C 0 1 Y N N N N N 38.584 6.833 12.661 3.024 -1.226 0.397 CE1 DPN 10 DPN CE2 CE2 C 0 1 Y N N N N N 37.732 8.857 11.666 3.049 1.097 -0.183 CE2 DPN 11 DPN CZ CZ C 0 1 Y N N N N N 38.566 8.224 12.578 3.703 -0.027 0.287 CZ DPN 12 DPN H H H 0 1 N N N Y Y N 35.196 4.284 11.887 -1.317 2.086 0.082 H DPN 13 DPN H2 HN2 H 0 1 N Y N Y Y N 35.149 5.801 12.489 -1.589 1.658 1.666 H2 DPN 14 DPN HA HA H 0 1 N N N Y N N 34.135 4.973 9.854 -1.019 -0.614 1.229 HA DPN 15 DPN HXT HXT H 0 1 N Y N Y N Y 33.129 8.306 9.333 -4.198 -1.462 -0.192 HXT DPN 16 DPN HB2 HB1 H 0 1 N N N N N N 36.530 4.896 9.877 -0.644 -1.260 -1.170 HB2 DPN 17 DPN HB3 HB2 H 0 1 N N N N N N 36.018 6.390 9.022 -0.627 0.468 -1.597 HB3 DPN 18 DPN HD1 HD1 H 0 1 N N N N N N 37.782 5.005 11.893 1.160 -2.237 0.128 HD1 DPN 19 DPN HD2 HD2 H 0 1 N N N N N N 36.273 8.587 10.128 1.204 1.900 -0.905 HD2 DPN 20 DPN HE1 HE1 H 0 1 N N N N N N 39.231 6.341 13.372 3.536 -2.105 0.761 HE1 DPN 21 DPN HE2 HE2 H 0 1 N N N N N N 37.715 9.935 11.602 3.581 2.033 -0.273 HE2 DPN 22 DPN HZ HZ H 0 1 N N N N N N 39.202 8.811 13.224 4.745 0.031 0.564 HZ DPN 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DPN N CA SING N N 1 DPN N H SING N N 2 DPN N H2 SING N N 3 DPN CA C SING N N 4 DPN CA CB SING N N 5 DPN CA HA SING N N 6 DPN C O DOUB N N 7 DPN C OXT SING N N 8 DPN OXT HXT SING N N 9 DPN CB CG SING N N 10 DPN CB HB2 SING N N 11 DPN CB HB3 SING N N 12 DPN CG CD1 DOUB Y N 13 DPN CG CD2 SING Y N 14 DPN CD1 CE1 SING Y N 15 DPN CD1 HD1 SING N N 16 DPN CD2 CE2 DOUB Y N 17 DPN CD2 HD2 SING N N 18 DPN CE1 CZ DOUB Y N 19 DPN CE1 HE1 SING N N 20 DPN CE2 CZ SING Y N 21 DPN CE2 HE2 SING N N 22 DPN CZ HZ SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DPN SMILES ACDLabs 12.01 "O=C(O)C(N)Cc1ccccc1" DPN InChI InChI 1.03 "InChI=1S/C9H11NO2/c10-8(9(11)12)6-7-4-2-1-3-5-7/h1-5,8H,6,10H2,(H,11,12)/t8-/m1/s1" DPN InChIKey InChI 1.03 COLNVLDHVKWLRT-MRVPVSSYSA-N DPN SMILES_CANONICAL CACTVS 3.370 "N[C@H](Cc1ccccc1)C(O)=O" DPN SMILES CACTVS 3.370 "N[CH](Cc1ccccc1)C(O)=O" DPN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)C[C@H](C(=O)O)N" DPN SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)CC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DPN "SYSTEMATIC NAME" ACDLabs 12.01 D-phenylalanine DPN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-2-azanyl-3-phenyl-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DPN "Create component" 1999-07-08 EBI DPN "Modify descriptor" 2011-06-04 RCSB DPN "Modify one letter code" 2013-02-05 RCSB DPN "Modify backbone" 2023-11-03 PDBE DPN "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id DPN _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type D-phenylalanylation _pdbx_chem_comp_pcm.category "Amino acid" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #