data_DRP # _chem_comp.id DRP _chem_comp.name "2-DEOXYRIBOFURANOSYL-PYRIDINE-5'-MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H14 N O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-06-25 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 275.195 _chem_comp.one_letter_code N _chem_comp.three_letter_code DRP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DRP P P P 0 1 N N N 26.407 18.687 27.102 4.581 -4.208 2.354 P DRP 1 DRP O1P O1P O 0 1 N N N 27.004 17.913 25.973 4.705 -5.662 2.004 O1P DRP 2 DRP O2P O2P O 0 1 N N N 27.199 18.974 28.331 4.410 -3.887 3.929 O2P DRP 3 DRP "O5'" O5* O 0 1 N N N 25.889 20.051 26.496 3.329 -3.444 1.668 "O5'" DRP 4 DRP C1 C1 C 0 1 Y N N 21.140 21.127 25.418 -1.069 -1.322 2.936 C1 DRP 5 DRP C2 C2 C 0 1 Y N N 20.660 20.286 26.428 -2.438 -1.128 3.030 C2 DRP 6 DRP N3 N3 N 0 1 Y N N 19.659 19.428 26.238 -3.112 -1.037 4.198 N3 DRP 7 DRP C4 C4 C 0 1 Y N N 19.057 19.332 25.050 -2.375 -1.147 5.326 C4 DRP 8 DRP C5 C5 C 0 1 Y N N 19.470 20.138 23.975 -1.004 -1.342 5.341 C5 DRP 9 DRP C6 C6 C 0 1 Y N N 20.529 21.045 24.163 -0.346 -1.430 4.119 C6 DRP 10 DRP "C2'" C2* C 0 1 N N N 22.371 22.665 27.070 0.128 -0.067 1.088 "C2'" DRP 11 DRP "C5'" C5* C 0 1 N N N 25.132 20.954 27.264 3.141 -2.068 1.947 "C5'" DRP 12 DRP "C4'" C4* C 0 1 N N R 24.542 22.007 26.361 1.914 -1.583 1.196 "C4'" DRP 13 DRP "O4'" O4* O 0 1 N N N 23.533 21.392 25.520 0.754 -2.299 1.648 "O4'" DRP 14 DRP "C1'" C1* C 0 1 N N R 22.295 22.074 25.683 -0.384 -1.414 1.591 "C1'" DRP 15 DRP "C3'" C3* C 0 1 N N S 23.819 23.116 27.118 1.601 -0.115 1.426 "C3'" DRP 16 DRP "O3'" O3* O 0 1 N N N 23.999 24.369 26.438 2.350 0.734 0.582 "O3'" DRP 17 DRP O3P O3P O 0 1 N Y N ? ? ? 5.842 -3.292 1.923 O3P DRP 18 DRP HOP2 2HOP H 0 0 N N N 28.120 19.035 28.107 5.025 -4.307 4.568 HOP2 DRP 19 DRP H2 H2 H 0 1 N N N 21.121 20.335 27.404 -3.056 -1.037 2.141 H2 DRP 20 DRP H4 H4 H 0 1 N N N 18.247 18.630 24.914 -2.935 -1.072 6.252 H4 DRP 21 DRP H5 H5 H 0 1 N N N 18.980 20.062 23.016 -0.460 -1.424 6.275 H5 DRP 22 DRP H6 H6 H 0 1 N N N 20.866 21.670 23.349 0.730 -1.582 4.098 H6 DRP 23 DRP "H2'1" 1H2* H 0 0 N N N 22.092 21.965 27.872 -0.000 0.001 0.000 "H2'1" DRP 24 DRP "H2'2" 2H2* H 0 0 N N N 21.668 23.500 27.208 -0.381 0.801 1.520 "H2'2" DRP 25 DRP "H5'1" 1H5* H 0 0 N N N 25.780 21.433 28.013 3.000 -1.936 3.021 "H5'1" DRP 26 DRP "H5'2" 2H5* H 0 0 N N N 24.322 20.413 27.775 4.023 -1.513 1.623 "H5'2" DRP 27 DRP "H4'" H4* H 0 1 N N N 25.386 22.436 25.802 2.051 -1.795 0.129 "H4'" DRP 28 DRP "H1'" H1* H 0 1 N N N 22.113 22.887 24.964 -1.110 -1.836 0.888 "H1'" DRP 29 DRP "H3'" H3* H 0 1 N N N 24.183 23.272 28.144 1.765 0.175 2.471 "H3'" DRP 30 DRP H3T H3T H 0 1 N Y N 23.152 24.773 26.288 3.266 0.418 0.615 H3T DRP 31 DRP HOP3 3HOP H 0 0 N N N -0.380 0.492 0.718 6.748 -3.598 2.142 HOP3 DRP 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DRP P O1P DOUB N N 1 DRP P O2P SING N N 2 DRP P "O5'" SING N N 3 DRP P O3P SING N N 4 DRP O2P HOP2 SING N N 5 DRP "O5'" "C5'" SING N N 6 DRP C1 C2 DOUB Y N 7 DRP C1 C6 SING Y N 8 DRP C1 "C1'" SING N N 9 DRP C2 N3 SING Y N 10 DRP C2 H2 SING N N 11 DRP N3 C4 DOUB Y N 12 DRP C4 C5 SING Y N 13 DRP C4 H4 SING N N 14 DRP C5 C6 DOUB Y N 15 DRP C5 H5 SING N N 16 DRP C6 H6 SING N N 17 DRP "C2'" "C1'" SING N N 18 DRP "C2'" "C3'" SING N N 19 DRP "C2'" "H2'1" SING N N 20 DRP "C2'" "H2'2" SING N N 21 DRP "C5'" "C4'" SING N N 22 DRP "C5'" "H5'1" SING N N 23 DRP "C5'" "H5'2" SING N N 24 DRP "C4'" "O4'" SING N N 25 DRP "C4'" "C3'" SING N N 26 DRP "C4'" "H4'" SING N N 27 DRP "O4'" "C1'" SING N N 28 DRP "C1'" "H1'" SING N N 29 DRP "C3'" "O3'" SING N N 30 DRP "C3'" "H3'" SING N N 31 DRP "O3'" H3T SING N N 32 DRP O3P HOP3 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DRP SMILES ACDLabs 10.04 "O=P(OCC2OC(c1cccnc1)CC2O)(O)O" DRP SMILES_CANONICAL CACTVS 3.341 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)c2cccnc2" DRP SMILES CACTVS 3.341 "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)c2cccnc2" DRP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(cnc1)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O" DRP SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(cnc1)C2CC(C(O2)COP(=O)(O)O)O" DRP InChI InChI 1.03 "InChI=1S/C10H14NO6P/c12-8-4-9(7-2-1-3-11-5-7)17-10(8)6-16-18(13,14)15/h1-3,5,8-10,12H,4,6H2,(H2,13,14,15)/t8-,9+,10+/m0/s1" DRP InChIKey InChI 1.03 PPHVLYPPVUJOAT-IVZWLZJFSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DRP "SYSTEMATIC NAME" ACDLabs 10.04 "(1R)-1,4-anhydro-2-deoxy-5-O-phosphono-1-pyridin-3-yl-D-erythro-pentitol" DRP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-3-hydroxy-5-pyridin-3-yl-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DRP "Create component" 2001-06-25 RCSB DRP "Modify descriptor" 2011-06-04 RCSB #