data_DS8 # _chem_comp.id DS8 _chem_comp.name "(2~{S},3~{S},4~{R},5~{S},6~{S})-2-[[(2~{S},4~{R},6~{R})-2-(hydroxymethyl)-6-oxidanyl-oxan-4-yl]methyl]-6-methyl-oxane-3,4,5-triol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H24 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-01-29 _chem_comp.pdbx_modified_date 2019-01-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 292.325 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DS8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6FHY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DS8 C1 C1 C 0 1 N N S -28.285 42.245 48.505 -1.245 -0.395 -0.347 C1 DS8 1 DS8 C2 C2 C 0 1 N N S -29.707 42.433 49.035 -2.410 -1.077 -1.070 C2 DS8 2 DS8 C3 C3 C 0 1 N N R -30.754 42.662 47.964 -3.702 -0.306 -0.780 C3 DS8 3 DS8 C4 C4 C 0 1 N N S -30.682 41.475 46.990 -3.916 -0.243 0.736 C4 DS8 4 DS8 C5 C5 C 0 1 N N S -29.227 41.343 46.449 -2.693 0.407 1.389 C5 DS8 5 DS8 C6 C6 C 0 1 N N N -29.059 40.138 45.499 -2.544 1.842 0.880 C6 DS8 6 DS8 C7 C7 C 0 1 N N N -27.680 43.456 47.775 0.039 -1.193 -0.583 C7 DS8 7 DS8 C8 C8 C 0 1 N N R -25.332 46.410 48.325 2.666 1.583 -0.129 C8 DS8 8 DS8 O2 O1 O 0 1 N N N -29.717 43.578 49.796 -2.540 -2.421 -0.603 O2 DS8 9 DS8 O3 O2 O 0 1 N N N -32.072 42.777 48.536 -3.596 1.019 -1.304 O3 DS8 10 DS8 C9 C9 C 0 1 N N N -26.500 45.607 47.736 1.432 0.881 -0.701 C9 DS8 11 DS8 O4 O3 O 0 1 N N N -31.128 40.281 47.660 -5.079 0.536 1.021 O4 DS8 12 DS8 C10 C10 C 0 1 N N R -26.586 44.241 48.441 1.224 -0.447 0.034 C10 DS8 13 DS8 C11 C11 C 0 1 N N N -25.217 43.526 48.385 2.491 -1.297 -0.101 C11 DS8 14 DS8 C12 C12 C 0 1 N N S -24.125 44.463 48.907 3.684 -0.510 0.447 C12 DS8 15 DS8 C13 C13 C 0 1 N N N -22.746 43.802 48.848 4.964 -1.328 0.262 C13 DS8 16 DS8 O5 O4 O 0 1 N N N -28.301 41.195 47.536 -1.522 -0.341 1.054 O5 DS8 17 DS8 O8 O5 O 0 1 N N N -25.203 47.670 47.668 2.899 2.797 -0.847 O8 DS8 18 DS8 O12 O6 O 0 1 N N N -24.161 45.653 48.107 3.803 0.727 -0.258 O12 DS8 19 DS8 O13 O7 O 0 1 N N N -21.674 44.628 49.390 6.059 -0.647 0.877 O13 DS8 20 DS8 H1 H1 H 0 1 N N N -27.627 41.976 49.344 -1.120 0.617 -0.732 H1 DS8 21 DS8 H2 H2 H 0 1 N N N -29.987 41.553 49.633 -2.220 -1.081 -2.143 H2 DS8 22 DS8 H3 H3 H 0 1 N N N -30.504 43.581 47.414 -4.543 -0.817 -1.247 H3 DS8 23 DS8 H4 H4 H 0 1 N N N -31.344 41.688 46.138 -4.047 -1.251 1.128 H4 DS8 24 DS8 H5 H5 H 0 1 N N N -28.990 42.258 45.886 -2.821 0.416 2.472 H5 DS8 25 DS8 H6 H6 H 0 1 N N N -28.018 40.090 45.147 -3.494 2.365 0.987 H6 DS8 26 DS8 H7 H7 H 0 1 N N N -29.307 39.211 46.036 -1.779 2.356 1.462 H7 DS8 27 DS8 H8 H8 H 0 1 N N N -29.733 40.254 44.637 -2.253 1.827 -0.170 H8 DS8 28 DS8 H9 H9 H 0 1 N N N -28.504 44.157 47.578 -0.053 -2.175 -0.119 H9 DS8 29 DS8 H10 H10 H 0 1 N N N -27.276 43.087 46.821 0.202 -1.311 -1.654 H10 DS8 30 DS8 H11 H11 H 0 1 N N N -25.506 46.555 49.402 2.500 1.811 0.924 H11 DS8 31 DS8 H12 H12 H 0 1 N N N -29.077 43.501 50.493 -3.261 -2.914 -1.020 H12 DS8 32 DS8 H13 H13 H 0 1 N N N -32.095 43.515 49.134 -4.380 1.564 -1.155 H13 DS8 33 DS8 H14 H14 H 0 1 N N N -27.439 46.159 47.889 0.555 1.515 -0.563 H14 DS8 34 DS8 H15 H15 H 0 1 N N N -26.335 45.455 46.659 1.581 0.690 -1.763 H15 DS8 35 DS8 H16 H16 H 0 1 N N N -32.016 40.406 47.972 -5.275 0.619 1.965 H16 DS8 36 DS8 H17 H17 H 0 1 N N N -26.852 44.406 49.496 1.024 -0.253 1.088 H17 DS8 37 DS8 H18 H18 H 0 1 N N N -25.251 42.621 49.009 2.372 -2.220 0.465 H18 DS8 38 DS8 H19 H19 H 0 1 N N N -24.993 43.246 47.345 2.661 -1.532 -1.151 H19 DS8 39 DS8 H20 H20 H 0 1 N N N -24.349 44.711 49.955 3.532 -0.310 1.508 H20 DS8 40 DS8 H21 H21 H 0 1 N N N -22.786 42.865 49.422 4.839 -2.307 0.724 H21 DS8 41 DS8 H22 H22 H 0 1 N N N -22.513 43.578 47.796 5.164 -1.452 -0.803 H22 DS8 42 DS8 H23 H23 H 0 1 N N N -24.476 48.152 48.046 3.668 3.295 -0.538 H23 DS8 43 DS8 H24 H24 H 0 1 N N N -20.849 44.161 49.323 6.904 -1.109 0.798 H24 DS8 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DS8 C6 C5 SING N N 1 DS8 C5 C4 SING N N 2 DS8 C5 O5 SING N N 3 DS8 C4 O4 SING N N 4 DS8 C4 C3 SING N N 5 DS8 O5 C1 SING N N 6 DS8 O8 C8 SING N N 7 DS8 C9 C8 SING N N 8 DS8 C9 C10 SING N N 9 DS8 C7 C10 SING N N 10 DS8 C7 C1 SING N N 11 DS8 C3 O3 SING N N 12 DS8 C3 C2 SING N N 13 DS8 O12 C8 SING N N 14 DS8 O12 C12 SING N N 15 DS8 C11 C10 SING N N 16 DS8 C11 C12 SING N N 17 DS8 C1 C2 SING N N 18 DS8 C13 C12 SING N N 19 DS8 C13 O13 SING N N 20 DS8 C2 O2 SING N N 21 DS8 C1 H1 SING N N 22 DS8 C2 H2 SING N N 23 DS8 C3 H3 SING N N 24 DS8 C4 H4 SING N N 25 DS8 C5 H5 SING N N 26 DS8 C6 H6 SING N N 27 DS8 C6 H7 SING N N 28 DS8 C6 H8 SING N N 29 DS8 C7 H9 SING N N 30 DS8 C7 H10 SING N N 31 DS8 C8 H11 SING N N 32 DS8 O2 H12 SING N N 33 DS8 O3 H13 SING N N 34 DS8 C9 H14 SING N N 35 DS8 C9 H15 SING N N 36 DS8 O4 H16 SING N N 37 DS8 C10 H17 SING N N 38 DS8 C11 H18 SING N N 39 DS8 C11 H19 SING N N 40 DS8 C12 H20 SING N N 41 DS8 C13 H21 SING N N 42 DS8 C13 H22 SING N N 43 DS8 O8 H23 SING N N 44 DS8 O13 H24 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DS8 InChI InChI 1.03 "InChI=1S/C13H24O7/c1-6-11(16)13(18)12(17)9(19-6)3-7-2-8(5-14)20-10(15)4-7/h6-18H,2-5H2,1H3/t6-,7+,8-,9-,10+,11+,12+,13+/m0/s1" DS8 InChIKey InChI 1.03 ROOQANRWEBNDFF-VBFQFBHJSA-N DS8 SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1O[C@@H](C[C@@H]2C[C@H](O)O[C@H](CO)C2)[C@@H](O)[C@H](O)[C@@H]1O" DS8 SMILES CACTVS 3.385 "C[CH]1O[CH](C[CH]2C[CH](O)O[CH](CO)C2)[CH](O)[CH](O)[CH]1O" DS8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)C[C@H]2C[C@H](O[C@H](C2)O)CO)O)O)O" DS8 SMILES "OpenEye OEToolkits" 2.0.6 "CC1C(C(C(C(O1)CC2CC(OC(C2)O)CO)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DS8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S},3~{S},4~{R},5~{S},6~{S})-2-[[(2~{S},4~{R},6~{R})-2-(hydroxymethyl)-6-oxidanyl-oxan-4-yl]methyl]-6-methyl-oxane-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DS8 "Create component" 2018-01-29 EBI DS8 "Initial release" 2019-01-30 RCSB #