data_DST # _chem_comp.id DST _chem_comp.name "DIMETHYLALLYL S-THIOLODIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H12 O6 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "DMASPP; DMAPP; DMADP; Dimethylallyl pyrophosphate; dimethylallyl diphosphate; isoprenyl pyrophosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-12-16 _chem_comp.pdbx_modified_date 2020-07-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 262.158 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DST _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1RQI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DST O4 O4 O 0 1 N N N 61.175 74.398 43.358 3.208 1.877 -0.170 O4 DST 1 DST P1 P1 P 0 1 N N N 59.704 74.197 43.133 3.166 0.268 -0.188 P1 DST 2 DST O6 O6 O 0 1 N N N 59.115 74.957 41.973 4.173 -0.282 -1.317 O6 DST 3 DST O5 O5 O 0 1 N N N 58.907 74.266 44.420 3.579 -0.251 1.136 O5 DST 4 DST O2 O2 O 0 1 N N N 59.564 72.715 42.542 1.670 -0.227 -0.516 O2 DST 5 DST P3 P3 P 0 1 N N N 58.137 71.981 42.385 0.302 -0.292 0.331 P3 DST 6 DST O8 O8 O 0 1 N N N 57.442 72.042 43.717 0.515 -1.229 1.623 O8 DST 7 DST O7 O7 O 0 1 N N N 57.423 72.462 41.158 -0.073 1.072 0.767 O7 DST 8 DST S9 S9 S 0 1 N N N 58.664 70.170 42.155 -1.241 -1.097 -0.879 S9 DST 9 DST C10 C10 C 0 1 N N N 60.143 69.636 41.547 -2.676 -1.090 0.231 C10 DST 10 DST C11 C11 C 0 1 N N N 60.519 68.919 40.384 -3.190 0.319 0.379 C11 DST 11 DST C12 C12 C 0 1 N N N 60.907 69.193 39.201 -4.394 0.624 -0.036 C12 DST 12 DST C13 C13 C 0 1 N N N 61.111 68.071 38.257 -5.329 -0.463 -0.500 C13 DST 13 DST C14 C14 C 0 1 N N N 61.054 70.619 38.747 -4.845 2.062 -0.050 C14 DST 14 DST HO4 HO4 H 0 1 N N N 61.339 74.534 44.284 2.949 2.287 -1.007 HO4 DST 15 DST HO6 HO6 H 0 1 N N N 58.306 75.374 42.245 5.095 -0.022 -1.183 HO6 DST 16 DST HO8 HO8 H 0 1 N N N 56.572 72.405 43.604 0.763 -2.139 1.412 HO8 DST 17 DST H101 H101 H 0 0 N N N 60.732 70.562 41.472 -3.461 -1.721 -0.186 H101 DST 18 DST H102 H102 H 0 0 N N N 60.540 69.015 42.363 -2.381 -1.473 1.208 H102 DST 19 DST H111 H111 H 0 0 N N N 60.461 67.852 40.543 -2.565 1.078 0.827 H111 DST 20 DST H131 H131 H 0 0 N N N 61.443 68.465 37.285 -4.871 -1.436 -0.323 H131 DST 21 DST H132 H132 H 0 0 N N N 61.876 67.390 38.657 -6.266 -0.397 0.054 H132 DST 22 DST H133 H133 H 0 0 N N N 60.165 67.524 38.127 -5.527 -0.342 -1.565 H133 DST 23 DST H141 H141 H 0 0 N N N 61.397 70.638 37.702 -4.597 2.511 -1.012 H141 DST 24 DST H142 H142 H 0 0 N N N 60.083 71.130 38.823 -5.923 2.107 0.105 H142 DST 25 DST H143 H143 H 0 0 N N N 61.790 71.132 39.384 -4.340 2.609 0.746 H143 DST 26 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DST O4 P1 SING N N 1 DST O4 HO4 SING N N 2 DST P1 O6 SING N N 3 DST P1 O5 DOUB N N 4 DST P1 O2 SING N N 5 DST O6 HO6 SING N N 6 DST O2 P3 SING N N 7 DST P3 O8 SING N N 8 DST P3 O7 DOUB N N 9 DST P3 S9 SING N N 10 DST O8 HO8 SING N N 11 DST S9 C10 SING N N 12 DST C10 C11 SING N N 13 DST C10 H101 SING N N 14 DST C10 H102 SING N N 15 DST C11 C12 DOUB N N 16 DST C11 H111 SING N N 17 DST C12 C13 SING N N 18 DST C12 C14 SING N N 19 DST C13 H131 SING N N 20 DST C13 H132 SING N N 21 DST C13 H133 SING N N 22 DST C14 H141 SING N N 23 DST C14 H142 SING N N 24 DST C14 H143 SING N N 25 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DST SMILES ACDLabs 12.01 "OP(O)(=O)OP(O)(=O)SC\C=C(\C)C" DST InChI InChI 1.03 "InChI=1S/C5H12O6P2S/c1-5(2)3-4-14-13(9,10)11-12(6,7)8/h3H,4H2,1-2H3,(H,9,10)(H2,6,7,8)" DST InChIKey InChI 1.03 ZWFWSISPSBLNGO-UHFFFAOYSA-N DST SMILES_CANONICAL CACTVS 3.385 "CC(C)=CCS[P](O)(=O)O[P](O)(O)=O" DST SMILES CACTVS 3.385 "CC(C)=CCS[P](O)(=O)O[P](O)(O)=O" DST SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=CCS[P@@](=O)(O)OP(=O)(O)O)C" DST SMILES "OpenEye OEToolkits" 2.0.7 "CC(=CCSP(=O)(O)OP(=O)(O)O)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DST "SYSTEMATIC NAME" ACDLabs 12.01 "S-(3-methylbut-2-en-1-yl) trihydrogen thiodiphosphate" DST "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-methylbut-2-enylsulfanyl(phosphonooxy)phosphinic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DST "Create component" 2003-12-16 RCSB DST "Modify descriptor" 2011-06-04 RCSB DST "Other modification" 2019-10-07 RCSB DST "Modify synonyms" 2020-07-15 PDBE # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 DST DMASPP ? ? 2 DST DMAPP ? ? 3 DST DMADP ? ? 4 DST "dimethylallyl pyrophosphate" ? ? 5 DST "dimethylallyl diphosphate" ? ? 6 DST "isoprenyl pyrophosphate" ? ? ##