data_DTB # _chem_comp.id DTB _chem_comp.name "6-(5-METHYL-2-OXO-IMIDAZOLIDIN-4-YL)-HEXANOIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H18 N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms D-DESTHIOBIOTIN _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-08-17 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 214.262 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DTB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1DAM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DTB CN CN C 0 1 N N N -3.145 22.488 13.006 -3.790 -1.121 0.246 CN DTB 1 DTB O O O 0 1 N N N -2.272 21.759 13.494 -4.259 -2.121 0.754 O DTB 2 DTB N2 N2 N 0 1 N N N -3.129 23.053 11.759 -2.576 -1.090 -0.318 N2 DTB 3 DTB CR CR C 0 1 N N R -4.380 23.743 11.510 -2.317 0.263 -0.833 CR DTB 4 DTB CS CS C 0 1 N N S -4.777 24.040 13.008 -3.596 1.045 -0.477 CS DTB 5 DTB N1 N1 N 0 1 N N N -4.275 22.845 13.639 -4.443 0.047 0.196 N1 DTB 6 DTB CT CT C 0 1 N N N -4.315 25.355 13.696 -3.272 2.205 0.467 CT DTB 7 DTB CE CE C 0 1 N N N -4.217 25.070 10.679 -1.101 0.879 -0.138 CE DTB 8 DTB CD CD C 0 1 N N N -5.578 25.692 10.317 0.157 0.099 -0.525 CD DTB 9 DTB CG CG C 0 1 N N N -5.641 26.784 9.267 1.373 0.715 0.170 CG DTB 10 DTB CB CB C 0 1 N N N -6.902 27.604 9.422 2.631 -0.065 -0.218 CB DTB 11 DTB CA CA C 0 1 N N N -6.964 28.689 8.318 3.847 0.550 0.477 CA DTB 12 DTB C C C 0 1 N N N -6.712 28.188 6.829 5.086 -0.218 0.095 C DTB 13 DTB OI1 OI1 O 0 1 N N N -7.365 27.219 6.380 5.005 -1.161 -0.656 OI1 DTB 14 DTB OI2 OI2 O 0 1 N N N -5.799 28.743 6.205 6.280 0.145 0.590 OI2 DTB 15 DTB HN2 HN2 H 0 1 N N N -2.366 22.998 11.114 -1.964 -1.840 -0.378 HN2 DTB 16 DTB HCR HCR H 0 1 N N N -5.128 23.088 11.040 -2.171 0.240 -1.913 HCR DTB 17 DTB HCS HCS H 0 1 N N N -5.876 24.021 13.054 -4.085 1.410 -1.380 HCS DTB 18 DTB HN1 HN1 H 0 1 N N N -4.694 22.367 14.411 -5.331 0.211 0.549 HN1 DTB 19 DTB HCT1 HCT1 H 0 0 N N N -4.688 25.379 14.730 -2.568 2.881 -0.018 HCT1 DTB 20 DTB HCT2 HCT2 H 0 0 N N N -3.216 25.399 13.702 -4.188 2.745 0.707 HCT2 DTB 21 DTB HCT3 HCT3 H 0 0 N N N -4.714 26.218 13.142 -2.829 1.815 1.383 HCT3 DTB 22 DTB HCE1 HCE1 H 0 0 N N N -3.642 25.794 11.275 -0.993 1.919 -0.447 HCE1 DTB 23 DTB HCE2 HCE2 H 0 0 N N N -3.671 24.844 9.751 -1.238 0.833 0.942 HCE2 DTB 24 DTB HCD1 HCD1 H 0 0 N N N -6.222 24.872 9.966 0.050 -0.941 -0.216 HCD1 DTB 25 DTB HCD2 HCD2 H 0 0 N N N -5.994 26.114 11.244 0.294 0.145 -1.606 HCD2 DTB 26 DTB HCG1 HCG1 H 0 0 N N N -4.767 27.442 9.378 1.481 1.754 -0.139 HCG1 DTB 27 DTB HCG2 HCG2 H 0 0 N N N -5.630 26.325 8.268 1.236 0.669 1.250 HCG2 DTB 28 DTB HCB1 HCB1 H 0 0 N N N -7.779 26.945 9.336 2.524 -1.105 0.091 HCB1 DTB 29 DTB HCB2 HCB2 H 0 0 N N N -6.903 28.088 10.410 2.769 -0.020 -1.298 HCB2 DTB 30 DTB HCA1 HCA1 H 0 0 N N N -7.963 29.148 8.354 3.955 1.590 0.168 HCA1 DTB 31 DTB HCA2 HCA2 H 0 0 N N N -6.203 29.449 8.550 3.710 0.504 1.557 HCA2 DTB 32 DTB HOI2 HOI2 H 0 0 N N N -5.688 28.320 5.362 7.046 -0.377 0.316 HOI2 DTB 33 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DTB CN O DOUB N N 1 DTB CN N2 SING N N 2 DTB CN N1 SING N N 3 DTB N2 CR SING N N 4 DTB N2 HN2 SING N N 5 DTB CR CS SING N N 6 DTB CR CE SING N N 7 DTB CR HCR SING N N 8 DTB CS N1 SING N N 9 DTB CS CT SING N N 10 DTB CS HCS SING N N 11 DTB N1 HN1 SING N N 12 DTB CT HCT1 SING N N 13 DTB CT HCT2 SING N N 14 DTB CT HCT3 SING N N 15 DTB CE CD SING N N 16 DTB CE HCE1 SING N N 17 DTB CE HCE2 SING N N 18 DTB CD CG SING N N 19 DTB CD HCD1 SING N N 20 DTB CD HCD2 SING N N 21 DTB CG CB SING N N 22 DTB CG HCG1 SING N N 23 DTB CG HCG2 SING N N 24 DTB CB CA SING N N 25 DTB CB HCB1 SING N N 26 DTB CB HCB2 SING N N 27 DTB CA C SING N N 28 DTB CA HCA1 SING N N 29 DTB CA HCA2 SING N N 30 DTB C OI1 DOUB N N 31 DTB C OI2 SING N N 32 DTB OI2 HOI2 SING N N 33 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DTB SMILES ACDLabs 12.01 "C1(=O)NC(C(N1)C)CCCCCC(=O)O" DTB InChI InChI 1.03 "InChI=1S/C10H18N2O3/c1-7-8(12-10(15)11-7)5-3-2-4-6-9(13)14/h7-8H,2-6H2,1H3,(H,13,14)(H2,11,12,15)/t7-,8+/m0/s1" DTB InChIKey InChI 1.03 AUTOLBMXDDTRRT-JGVFFNPUSA-N DTB SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1NC(=O)N[C@@H]1CCCCCC(O)=O" DTB SMILES CACTVS 3.385 "C[CH]1NC(=O)N[CH]1CCCCCC(O)=O" DTB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H]1[C@H](NC(=O)N1)CCCCCC(=O)O" DTB SMILES "OpenEye OEToolkits" 1.7.6 "CC1C(NC(=O)N1)CCCCCC(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DTB "SYSTEMATIC NAME" ACDLabs 12.01 "6-[(4R,5S)-5-methyl-2-oxoimidazolidin-4-yl]hexanoic acid" DTB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "6-[(4R,5S)-5-methyl-2-oxidanylidene-imidazolidin-4-yl]hexanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DTB "Create component" 1999-08-17 RCSB DTB "Modify descriptor" 2011-06-04 RCSB DTB "Modify synonyms" 2016-03-30 RCSB DTB "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id DTB _pdbx_chem_comp_synonyms.name D-DESTHIOBIOTIN _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##