data_DU0 # _chem_comp.id DU0 _chem_comp.name "2-[2-[(1~{S},2~{S},4~{S},5'~{R},6~{R},7~{S},8~{R},9~{S},12~{S},13~{R},16~{S})-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icos-18-ene-6,2'-oxane]-16-yl]oxyethyl]propane-1,3-diol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H52 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-08-27 _chem_comp.pdbx_modified_date 2019-10-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 516.752 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DU0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6KKR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DU0 C13 C1 C 0 1 N N N 114.029 104.628 101.496 -9.576 2.707 0.394 C13 DU0 1 DU0 C15 C2 C 0 1 N N N 116.769 104.638 104.106 -6.771 0.383 1.639 C15 DU0 2 DU0 C17 C3 C 0 1 N N S 114.404 107.006 109.968 -0.647 0.133 -0.304 C17 DU0 3 DU0 C20 C4 C 0 1 N N N 113.651 107.620 112.669 2.117 0.063 0.117 C20 DU0 4 DU0 C21 C5 C 0 1 N N N 113.337 107.661 114.151 3.533 0.086 0.668 C21 DU0 5 DU0 C22 C6 C 0 1 N N S 113.869 108.940 114.789 4.355 -0.974 -0.071 C22 DU0 6 DU0 C24 C7 C 0 1 N N N 112.527 109.720 116.540 6.613 -0.169 -0.102 C24 DU0 7 DU0 C26 C8 C 0 1 N N N 113.090 108.523 118.741 8.987 0.609 -0.060 C26 DU0 8 DU0 C01 C9 C 0 1 N N N 116.815 105.782 108.349 -2.773 -0.942 1.139 C01 DU0 9 DU0 C02 C10 C 0 1 N N S 116.119 107.116 108.026 -2.822 -1.033 -0.387 C02 DU0 10 DU0 C03 C11 C 0 1 N N S 114.642 107.178 108.466 -1.993 0.122 -1.010 C03 DU0 11 DU0 C04 C12 C 0 1 N N N 113.951 106.209 107.508 -2.891 1.334 -0.734 C04 DU0 12 DU0 C05 C13 C 0 1 N N S 114.633 106.592 106.196 -4.316 0.795 -1.029 C05 DU0 13 DU0 C06 C14 C 0 1 N N R 115.931 107.339 106.511 -4.239 -0.753 -0.875 C06 DU0 14 DU0 C07 C15 C 0 1 N N S 116.930 106.748 105.507 -5.243 -1.065 0.261 C07 DU0 15 DU0 C08 C16 C 0 1 N N N 117.810 107.795 104.815 -6.070 -2.309 -0.069 C08 DU0 16 DU0 C09 C17 C 0 1 N N R 116.051 105.889 104.600 -6.126 0.201 0.272 C09 DU0 17 DU0 C11 C18 C 0 1 N N N 115.700 106.346 102.250 -7.952 1.267 -0.848 C11 DU0 18 DU0 C12 C19 C 0 1 N N R 115.486 104.873 101.911 -8.700 1.454 0.475 C12 DU0 19 DU0 C14 C20 C 0 1 N N N 115.919 103.927 103.046 -7.686 1.612 1.611 C14 DU0 20 DU0 C18 C21 C 0 1 N N N 112.922 107.210 110.303 0.206 1.284 -0.847 C18 DU0 21 DU0 C19 C22 C 0 1 N N N 112.692 107.320 111.780 1.590 1.185 -0.275 C19 DU0 22 DU0 C25 C23 C 0 1 N N N 112.395 109.701 118.062 7.969 -0.333 0.587 C25 DU0 23 DU0 C27 C24 C 0 1 N N N 114.632 108.839 118.932 8.575 2.059 0.197 C27 DU0 24 DU0 C51 C25 C 0 1 N N N 112.322 107.808 119.944 10.370 0.356 0.543 C51 DU0 25 DU0 C75 C26 C 0 1 N N N 115.366 109.041 114.522 3.665 -2.333 0.055 C75 DU0 26 DU0 C76 C27 C 0 1 N N N 115.635 109.046 113.014 2.303 -2.286 -0.640 C76 DU0 27 DU0 C77 C28 C 0 1 N N R 115.109 107.798 112.280 1.410 -1.258 0.061 C77 DU0 28 DU0 C78 C29 C 0 1 N N N 115.896 106.556 112.727 1.171 -1.733 1.496 C78 DU0 29 DU0 C79 C30 C 0 1 N N S 115.253 108.021 110.753 0.059 -1.189 -0.632 C79 DU0 30 DU0 C80 C31 C 0 1 N N N 116.712 108.047 110.268 -0.784 -2.395 -0.230 C80 DU0 31 DU0 C81 C32 C 0 1 N N N 116.840 108.252 108.751 -2.191 -2.334 -0.845 C81 DU0 32 DU0 O10 O1 O 0 1 N N N 115.403 106.641 103.590 -7.109 0.116 -0.753 O10 DU0 33 DU0 O16 O2 O 0 1 N N N 115.007 105.482 105.447 -5.206 1.271 -0.005 O16 DU0 34 DU0 O23 O3 O 0 1 N N N 113.591 108.892 116.160 5.662 -1.048 0.502 O23 DU0 35 DU0 O28 O4 O 0 1 N N N 114.754 109.600 120.068 9.459 2.937 -0.504 O28 DU0 36 DU0 O52 O5 O 0 1 N N N 112.588 108.398 121.207 11.340 1.152 -0.141 O52 DU0 37 DU0 H1 H1 H 0 1 N N N 113.890 103.564 101.255 -10.295 2.596 -0.417 H1 DU0 38 DU0 H2 H2 H 0 1 N N N 113.360 104.907 102.324 -10.108 2.840 1.336 H2 DU0 39 DU0 H3 H3 H 0 1 N N N 113.792 105.238 100.612 -8.947 3.578 0.206 H3 DU0 40 DU0 H4 H4 H 0 1 N N N 116.938 103.957 104.953 -7.358 -0.502 1.884 H4 DU0 41 DU0 H5 H5 H 0 1 N N N 117.736 104.923 103.666 -5.994 0.524 2.391 H5 DU0 42 DU0 H6 H6 H 0 1 N N N 114.701 105.989 110.264 -0.771 0.236 0.774 H6 DU0 43 DU0 H7 H7 H 0 1 N N N 112.247 107.617 114.289 3.974 1.070 0.509 H7 DU0 44 DU0 H8 H8 H 0 1 N N N 113.803 106.794 114.641 3.516 -0.140 1.735 H8 DU0 45 DU0 H9 H9 H 0 1 N N N 113.368 109.802 114.324 4.435 -0.702 -1.124 H9 DU0 46 DU0 H10 H10 H 0 1 N N N 112.721 110.748 116.200 6.274 0.861 0.004 H10 DU0 47 DU0 H11 H11 H 0 1 N N N 111.595 109.353 116.085 6.711 -0.412 -1.160 H11 DU0 48 DU0 H12 H12 H 0 1 N N N 113.094 107.747 117.961 9.020 0.425 -1.134 H12 DU0 49 DU0 H13 H13 H 0 1 N N N 116.922 105.678 109.439 -3.292 -0.041 1.467 H13 DU0 50 DU0 H14 H14 H 0 1 N N N 116.211 104.950 107.959 -3.257 -1.818 1.571 H14 DU0 51 DU0 H15 H15 H 0 1 N N N 117.810 105.765 107.880 -1.734 -0.902 1.467 H15 DU0 52 DU0 H16 H16 H 0 1 N N N 114.283 108.185 108.206 -1.861 -0.035 -2.080 H16 DU0 53 DU0 H17 H17 H 0 1 N N N 112.865 106.381 107.468 -2.806 1.647 0.306 H17 DU0 54 DU0 H18 H18 H 0 1 N N N 114.147 105.161 107.778 -2.642 2.157 -1.404 H18 DU0 55 DU0 H19 H19 H 0 1 N N N 113.967 107.253 105.622 -4.651 1.081 -2.026 H19 DU0 56 DU0 H20 H20 H 0 1 N N N 115.798 108.413 106.311 -4.470 -1.278 -1.802 H20 DU0 57 DU0 H21 H21 H 0 1 N N N 117.596 106.071 106.062 -4.726 -1.186 1.213 H21 DU0 58 DU0 H22 H22 H 0 1 N N N 118.391 108.344 105.571 -5.406 -3.164 -0.194 H22 DU0 59 DU0 H23 H23 H 0 1 N N N 118.497 107.293 104.118 -6.768 -2.507 0.745 H23 DU0 60 DU0 H24 H24 H 0 1 N N N 117.174 108.499 104.259 -6.626 -2.141 -0.991 H24 DU0 61 DU0 H25 H25 H 0 1 N N N 116.752 106.602 102.058 -8.671 1.127 -1.656 H25 DU0 62 DU0 H26 H26 H 0 1 N N N 115.051 106.954 101.603 -7.344 2.149 -1.051 H26 DU0 63 DU0 H27 H27 H 0 1 N N N 116.116 104.643 101.039 -9.328 0.584 0.664 H27 DU0 64 DU0 H28 H28 H 0 1 N N N 115.019 103.520 103.530 -8.212 1.696 2.561 H28 DU0 65 DU0 H29 H29 H 0 1 N N N 116.508 103.104 102.615 -7.087 2.508 1.444 H29 DU0 66 DU0 H30 H30 H 0 1 N N N 112.572 108.134 109.819 0.256 1.219 -1.934 H30 DU0 67 DU0 H31 H31 H 0 1 N N N 112.349 106.354 109.917 -0.240 2.236 -0.558 H31 DU0 68 DU0 H32 H32 H 0 1 N N N 111.693 107.147 112.152 2.176 2.088 -0.186 H32 DU0 69 DU0 H33 H33 H 0 1 N N N 112.830 110.631 118.457 7.871 -0.090 1.645 H33 DU0 70 DU0 H34 H34 H 0 1 N N N 111.325 109.661 118.314 8.308 -1.363 0.481 H34 DU0 71 DU0 H35 H35 H 0 1 N N N 115.197 107.902 119.044 7.555 2.215 -0.154 H35 DU0 72 DU0 H36 H36 H 0 1 N N N 115.013 109.396 118.063 8.628 2.268 1.265 H36 DU0 73 DU0 H37 H37 H 0 1 N N N 111.240 107.866 119.752 10.360 0.625 1.599 H37 DU0 74 DU0 H38 H38 H 0 1 N N N 112.632 106.753 119.979 10.626 -0.698 0.439 H38 DU0 75 DU0 H39 H39 H 0 1 N N N 115.876 108.180 114.979 4.284 -3.099 -0.412 H39 DU0 76 DU0 H40 H40 H 0 1 N N N 115.752 109.972 114.963 3.525 -2.572 1.109 H40 DU0 77 DU0 H41 H41 H 0 1 N N N 116.722 109.107 112.857 2.437 -2.000 -1.683 H41 DU0 78 DU0 H42 H42 H 0 1 N N N 115.151 109.933 112.579 1.835 -3.269 -0.589 H42 DU0 79 DU0 H43 H43 H 0 1 N N N 115.779 106.418 113.812 0.452 -1.075 1.982 H43 DU0 80 DU0 H44 H44 H 0 1 N N N 115.511 105.670 112.201 0.780 -2.751 1.481 H44 DU0 81 DU0 H45 H45 H 0 1 N N N 116.961 106.691 112.487 2.112 -1.713 2.046 H45 DU0 82 DU0 H46 H46 H 0 1 N N N 114.832 109.015 110.541 0.223 -1.234 -1.709 H46 DU0 83 DU0 H47 H47 H 0 1 N N N 117.186 107.090 110.533 -0.289 -3.305 -0.571 H47 DU0 84 DU0 H48 H48 H 0 1 N N N 117.236 108.869 110.778 -0.869 -2.423 0.856 H48 DU0 85 DU0 H49 H49 H 0 1 N N N 117.903 108.252 108.468 -2.786 -3.178 -0.497 H49 DU0 86 DU0 H50 H50 H 0 1 N N N 116.386 109.214 108.470 -2.122 -2.351 -1.933 H50 DU0 87 DU0 H51 H51 H 0 1 N N N 115.669 109.808 120.213 9.257 3.875 -0.387 H51 DU0 88 DU0 H52 H52 H 0 1 N N N 112.107 107.934 121.882 12.243 1.043 0.190 H52 DU0 89 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DU0 C13 C12 SING N N 1 DU0 C12 C11 SING N N 2 DU0 C12 C14 SING N N 3 DU0 C11 O10 SING N N 4 DU0 C14 C15 SING N N 5 DU0 O10 C09 SING N N 6 DU0 C15 C09 SING N N 7 DU0 C09 O16 SING N N 8 DU0 C09 C07 SING N N 9 DU0 C08 C07 SING N N 10 DU0 O16 C05 SING N N 11 DU0 C07 C06 SING N N 12 DU0 C05 C06 SING N N 13 DU0 C05 C04 SING N N 14 DU0 C06 C02 SING N N 15 DU0 C04 C03 SING N N 16 DU0 C02 C01 SING N N 17 DU0 C02 C03 SING N N 18 DU0 C02 C81 SING N N 19 DU0 C03 C17 SING N N 20 DU0 C81 C80 SING N N 21 DU0 C17 C18 SING N N 22 DU0 C17 C79 SING N N 23 DU0 C80 C79 SING N N 24 DU0 C18 C19 SING N N 25 DU0 C79 C77 SING N N 26 DU0 C19 C20 DOUB N N 27 DU0 C77 C20 SING N N 28 DU0 C77 C78 SING N N 29 DU0 C77 C76 SING N N 30 DU0 C20 C21 SING N N 31 DU0 C76 C75 SING N N 32 DU0 C21 C22 SING N N 33 DU0 C75 C22 SING N N 34 DU0 C22 O23 SING N N 35 DU0 O23 C24 SING N N 36 DU0 C24 C25 SING N N 37 DU0 C25 C26 SING N N 38 DU0 C26 C27 SING N N 39 DU0 C26 C51 SING N N 40 DU0 C27 O28 SING N N 41 DU0 C51 O52 SING N N 42 DU0 C13 H1 SING N N 43 DU0 C13 H2 SING N N 44 DU0 C13 H3 SING N N 45 DU0 C15 H4 SING N N 46 DU0 C15 H5 SING N N 47 DU0 C17 H6 SING N N 48 DU0 C21 H7 SING N N 49 DU0 C21 H8 SING N N 50 DU0 C22 H9 SING N N 51 DU0 C24 H10 SING N N 52 DU0 C24 H11 SING N N 53 DU0 C26 H12 SING N N 54 DU0 C01 H13 SING N N 55 DU0 C01 H14 SING N N 56 DU0 C01 H15 SING N N 57 DU0 C03 H16 SING N N 58 DU0 C04 H17 SING N N 59 DU0 C04 H18 SING N N 60 DU0 C05 H19 SING N N 61 DU0 C06 H20 SING N N 62 DU0 C07 H21 SING N N 63 DU0 C08 H22 SING N N 64 DU0 C08 H23 SING N N 65 DU0 C08 H24 SING N N 66 DU0 C11 H25 SING N N 67 DU0 C11 H26 SING N N 68 DU0 C12 H27 SING N N 69 DU0 C14 H28 SING N N 70 DU0 C14 H29 SING N N 71 DU0 C18 H30 SING N N 72 DU0 C18 H31 SING N N 73 DU0 C19 H32 SING N N 74 DU0 C25 H33 SING N N 75 DU0 C25 H34 SING N N 76 DU0 C27 H35 SING N N 77 DU0 C27 H36 SING N N 78 DU0 C51 H37 SING N N 79 DU0 C51 H38 SING N N 80 DU0 C75 H39 SING N N 81 DU0 C75 H40 SING N N 82 DU0 C76 H41 SING N N 83 DU0 C76 H42 SING N N 84 DU0 C78 H43 SING N N 85 DU0 C78 H44 SING N N 86 DU0 C78 H45 SING N N 87 DU0 C79 H46 SING N N 88 DU0 C80 H47 SING N N 89 DU0 C80 H48 SING N N 90 DU0 C81 H49 SING N N 91 DU0 C81 H50 SING N N 92 DU0 O28 H51 SING N N 93 DU0 O52 H52 SING N N 94 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DU0 InChI InChI 1.03 "InChI=1S/C32H52O5/c1-20-7-13-32(36-19-20)21(2)29-28(37-32)16-27-25-6-5-23-15-24(35-14-10-22(17-33)18-34)8-11-30(23,3)26(25)9-12-31(27,29)4/h5,20-22,24-29,33-34H,6-19H2,1-4H3/t20-,21+,24+,25-,26+,27+,28+,29+,30+,31+,32-/m1/s1" DU0 InChIKey InChI 1.03 GFDJQXOBWHMOSQ-LEZUHYJESA-N DU0 SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1CC[C@@]2(OC1)O[C@H]3C[C@H]4[C@@H]5CC=C6C[C@H](CC[C@]6(C)[C@H]5CC[C@]4(C)[C@H]3[C@@H]2C)OCCC(CO)CO" DU0 SMILES CACTVS 3.385 "C[CH]1CC[C]2(OC1)O[CH]3C[CH]4[CH]5CC=C6C[CH](CC[C]6(C)[CH]5CC[C]4(C)[CH]3[CH]2C)OCCC(CO)CO" DU0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1CC[C@@]2([C@H]([C@H]3[C@@H](O2)C[C@@H]4[C@@]3(CC[C@H]5[C@H]4CC=C6[C@@]5(CC[C@@H](C6)OCCC(CO)CO)C)C)C)OC1" DU0 SMILES "OpenEye OEToolkits" 2.0.7 "CC1CCC2(C(C3C(O2)CC4C3(CCC5C4CC=C6C5(CCC(C6)OCCC(CO)CO)C)C)C)OC1" # _pdbx_chem_comp_identifier.comp_id DU0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[2-[(1~{S},2~{S},4~{S},5'~{R},6~{R},7~{S},8~{R},9~{S},12~{S},13~{R},16~{S})-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icos-18-ene-6,2'-oxane]-16-yl]oxyethyl]propane-1,3-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DU0 "Create component" 2019-08-27 PDBJ DU0 "Modify coordinates" 2019-09-25 PDBJ DU0 "Initial release" 2019-10-23 RCSB ##