data_DU9 # _chem_comp.id DU9 _chem_comp.name "6-[(2S,6R)-2,6-dimethylmorpholin-4-yl]-4-fluoranyl-1-methyl-1'-(8-methyl-4-oxidanylidene-3,5,6,7-tetrahydropyrido[2,3-d]pyrimidin-2-yl)spiro[indole-3,4'-piperidine]-2-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H35 F N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-08-28 _chem_comp.pdbx_modified_date 2020-03-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 510.604 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DU9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6KRO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DU9 C10 C1 C 0 1 N N N 1.938 -11.474 -7.224 0.139 -0.929 0.169 C10 DU9 1 DU9 C11 C2 C 0 1 Y N N 1.702 -12.043 -5.867 1.518 -0.319 0.185 C11 DU9 2 DU9 C12 C3 C 0 1 Y N N 1.384 -13.326 -5.463 1.984 0.959 -0.039 C12 DU9 3 DU9 C14 C4 C 0 1 Y N N 1.208 -13.739 -4.134 3.340 1.227 0.046 C14 DU9 4 DU9 C15 C5 C 0 1 Y N N 1.351 -12.754 -3.133 4.226 0.204 0.358 C15 DU9 5 DU9 C01 C6 C 0 1 N N N 3.279 -12.454 -15.760 -7.735 1.172 -1.117 C01 DU9 6 DU9 C02 C7 C 0 1 N N N 2.983 -12.255 -14.307 -6.372 0.600 -0.842 C02 DU9 7 DU9 C03 C8 C 0 1 N N N 1.595 -12.161 -13.862 -5.664 -0.021 -1.879 C03 DU9 8 DU9 C06 C9 C 0 1 N N N 2.470 -11.836 -11.586 -3.911 -0.428 -0.371 C06 DU9 9 DU9 C08 C10 C 0 1 N N N 0.877 -11.451 -9.609 -1.855 -1.489 -1.225 C08 DU9 10 DU9 C09 C11 C 0 1 N N N 0.695 -11.645 -8.100 -0.487 -0.797 -1.217 C09 DU9 11 DU9 C17 C12 C 0 1 N N N 1.036 -11.869 -0.702 6.358 -0.398 -0.465 C17 DU9 12 DU9 C18 C13 C 0 1 N N R 1.821 -12.203 0.629 7.853 -0.115 -0.295 C18 DU9 13 DU9 C19 C14 C 0 1 N N N 1.748 -11.061 1.662 8.649 -0.957 -1.295 C19 DU9 14 DU9 C21 C15 C 0 1 N N S 1.510 -14.536 0.232 7.374 2.146 0.333 C21 DU9 15 DU9 C22 C16 C 0 1 N N N 1.175 -15.908 0.852 7.683 3.600 -0.029 C22 DU9 16 DU9 C23 C17 C 0 1 N N N 0.670 -14.245 -1.071 5.874 1.887 0.170 C23 DU9 17 DU9 C24 C18 C 0 1 Y N N 1.684 -11.419 -3.519 3.757 -1.081 0.584 C24 DU9 18 DU9 C25 C19 C 0 1 Y N N 1.848 -11.043 -4.868 2.394 -1.353 0.498 C25 DU9 19 DU9 C27 C20 C 0 1 N N N 2.416 -8.433 -4.876 2.320 -3.823 1.018 C27 DU9 20 DU9 C28 C21 C 0 1 N N N 2.199 -9.983 -6.914 0.366 -2.384 0.504 C28 DU9 21 DU9 C30 C22 C 0 1 N N N 3.134 -12.106 -7.895 -0.748 -0.274 1.224 C30 DU9 22 DU9 C31 C23 C 0 1 N N N 3.435 -11.521 -9.270 -2.117 -0.962 1.235 C31 DU9 23 DU9 C33 C24 C 0 1 N N N 4.010 -12.126 -13.379 -5.791 0.670 0.411 C33 DU9 24 DU9 C35 C25 C 0 1 N N N 6.503 -12.091 -12.645 -5.983 1.071 2.842 C35 DU9 25 DU9 C36 C26 C 0 1 N N N 5.744 -12.447 -15.197 -7.637 2.090 1.195 C36 DU9 26 DU9 C37 C27 C 0 1 N N N 4.672 -11.826 -16.100 -8.516 1.338 0.187 C37 DU9 27 DU9 F13 F1 F 0 1 N N N 1.222 -14.307 -6.424 1.118 1.951 -0.342 F13 DU9 28 DU9 N05 N1 N 0 1 N N N 1.368 -11.936 -12.443 -4.441 -0.527 -1.620 N05 DU9 29 DU9 N07 N2 N 0 1 N N N 2.260 -11.636 -10.213 -2.666 -0.944 -0.127 N07 DU9 30 DU9 N16 N3 N 0 1 N N N 1.209 -12.997 -1.679 5.595 0.470 0.444 N16 DU9 31 DU9 N26 N4 N 0 1 N N N 2.164 -9.775 -5.502 1.690 -2.545 0.679 N26 DU9 32 DU9 N32 N5 N 0 1 N N N 3.715 -11.914 -12.009 -4.570 0.153 0.608 N32 DU9 33 DU9 N34 N6 N 0 1 N N N 5.400 -12.207 -13.736 -6.454 1.264 1.468 N34 DU9 34 DU9 O04 O1 O 0 1 N N N 0.583 -12.255 -14.578 -6.146 -0.104 -2.997 O04 DU9 35 DU9 O20 O2 O 0 1 N N N 1.363 -13.444 1.129 8.101 1.273 -0.535 O20 DU9 36 DU9 O29 O3 O 0 1 N N N 2.465 -9.108 -7.743 -0.484 -3.244 0.599 O29 DU9 37 DU9 H1 H1 H 0 1 N N N 0.974 -14.764 -3.888 3.708 2.227 -0.130 H1 DU9 38 DU9 H2 H2 H 0 1 N N N 2.500 -11.965 -16.363 -7.629 2.143 -1.600 H2 DU9 39 DU9 H3 H3 H 0 1 N N N 3.297 -13.530 -15.986 -8.282 0.499 -1.778 H3 DU9 40 DU9 H4 H4 H 0 1 N N N 0.557 -10.425 -9.843 -2.353 -1.302 -2.176 H4 DU9 41 DU9 H5 H5 H 0 1 N N N 0.208 -12.167 -10.109 -1.722 -2.562 -1.086 H5 DU9 42 DU9 H6 H6 H 0 1 N N N -0.054 -10.915 -7.759 -0.612 0.258 -1.460 H6 DU9 43 DU9 H7 H7 H 0 1 N N N 0.314 -12.664 -7.940 0.163 -1.266 -1.955 H7 DU9 44 DU9 H8 H8 H 0 1 N N N 1.433 -10.941 -1.139 6.064 -0.194 -1.494 H8 DU9 45 DU9 H9 H9 H 0 1 N N N -0.033 -11.740 -0.475 6.156 -1.442 -0.228 H9 DU9 46 DU9 H10 H10 H 0 1 N N N 2.879 -12.311 0.347 8.159 -0.369 0.720 H10 DU9 47 DU9 H11 H11 H 0 1 N N N 2.309 -11.346 2.564 8.344 -0.700 -2.309 H11 DU9 48 DU9 H12 H12 H 0 1 N N N 2.186 -10.149 1.231 9.713 -0.755 -1.174 H12 DU9 49 DU9 H13 H13 H 0 1 N N N 0.697 -10.873 1.927 8.456 -2.014 -1.114 H13 DU9 50 DU9 H14 H14 H 0 1 N N N 2.563 -14.581 -0.083 7.666 1.958 1.366 H14 DU9 51 DU9 H15 H15 H 0 1 N N N 1.785 -16.062 1.754 7.390 3.788 -1.061 H15 DU9 52 DU9 H16 H16 H 0 1 N N N 0.109 -15.938 1.121 7.129 4.265 0.633 H16 DU9 53 DU9 H17 H17 H 0 1 N N N 1.392 -16.703 0.123 8.752 3.783 0.084 H17 DU9 54 DU9 H18 H18 H 0 1 N N N -0.391 -14.110 -0.812 5.319 2.510 0.871 H18 DU9 55 DU9 H19 H19 H 0 1 N N N 0.771 -15.082 -1.778 5.572 2.127 -0.849 H19 DU9 56 DU9 H20 H20 H 0 1 N N N 1.815 -10.672 -2.750 4.450 -1.873 0.826 H20 DU9 57 DU9 H21 H21 H 0 1 N N N 2.336 -8.517 -3.782 1.555 -4.594 1.102 H21 DU9 58 DU9 H22 H22 H 0 1 N N N 3.425 -8.087 -5.144 3.029 -4.097 0.237 H22 DU9 59 DU9 H23 H23 H 0 1 N N N 1.671 -7.712 -5.243 2.845 -3.727 1.969 H23 DU9 60 DU9 H24 H24 H 0 1 N N N 2.941 -13.183 -8.009 -0.282 -0.376 2.204 H24 DU9 61 DU9 H25 H25 H 0 1 N N N 4.014 -11.957 -7.252 -0.873 0.783 0.989 H25 DU9 62 DU9 H26 H26 H 0 1 N N N 4.290 -12.060 -9.704 -2.006 -1.993 1.571 H26 DU9 63 DU9 H27 H27 H 0 1 N N N 3.692 -10.458 -9.153 -2.788 -0.429 1.909 H27 DU9 64 DU9 H28 H28 H 0 1 N N N 6.034 -11.919 -11.665 -6.466 0.194 3.272 H28 DU9 65 DU9 H29 H29 H 0 1 N N N 7.087 -13.023 -12.613 -4.903 0.926 2.839 H29 DU9 66 DU9 H30 H30 H 0 1 N N N 7.169 -11.249 -12.885 -6.230 1.950 3.437 H30 DU9 67 DU9 H31 H31 H 0 1 N N N 5.796 -13.530 -15.385 -7.329 3.047 0.774 H31 DU9 68 DU9 H32 H32 H 0 1 N N N 6.719 -11.989 -15.421 -8.192 2.256 2.119 H32 DU9 69 DU9 H33 H33 H 0 1 N N N 4.918 -12.027 -17.153 -9.426 1.908 -0.001 H33 DU9 70 DU9 H34 H34 H 0 1 N N N 4.636 -10.739 -15.933 -8.773 0.357 0.587 H34 DU9 71 DU9 H35 H35 H 0 1 N N N 0.438 -11.854 -12.085 -3.938 -0.963 -2.326 H35 DU9 72 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DU9 C37 C01 SING N N 1 DU9 C37 C36 SING N N 2 DU9 C01 C02 SING N N 3 DU9 C36 N34 SING N N 4 DU9 O04 C03 DOUB N N 5 DU9 C02 C03 SING N N 6 DU9 C02 C33 DOUB N N 7 DU9 C03 N05 SING N N 8 DU9 N34 C33 SING N N 9 DU9 N34 C35 SING N N 10 DU9 C33 N32 SING N N 11 DU9 N05 C06 SING N N 12 DU9 N32 C06 DOUB N N 13 DU9 C06 N07 SING N N 14 DU9 N07 C08 SING N N 15 DU9 N07 C31 SING N N 16 DU9 C08 C09 SING N N 17 DU9 C31 C30 SING N N 18 DU9 C09 C10 SING N N 19 DU9 C30 C10 SING N N 20 DU9 O29 C28 DOUB N N 21 DU9 C10 C28 SING N N 22 DU9 C10 C11 SING N N 23 DU9 C28 N26 SING N N 24 DU9 F13 C12 SING N N 25 DU9 C11 C12 DOUB Y N 26 DU9 C11 C25 SING Y N 27 DU9 N26 C27 SING N N 28 DU9 N26 C25 SING N N 29 DU9 C12 C14 SING Y N 30 DU9 C25 C24 DOUB Y N 31 DU9 C14 C15 DOUB Y N 32 DU9 C24 C15 SING Y N 33 DU9 C15 N16 SING N N 34 DU9 N16 C23 SING N N 35 DU9 N16 C17 SING N N 36 DU9 C23 C21 SING N N 37 DU9 C17 C18 SING N N 38 DU9 C21 C22 SING N N 39 DU9 C21 O20 SING N N 40 DU9 C18 O20 SING N N 41 DU9 C18 C19 SING N N 42 DU9 C14 H1 SING N N 43 DU9 C01 H2 SING N N 44 DU9 C01 H3 SING N N 45 DU9 C08 H4 SING N N 46 DU9 C08 H5 SING N N 47 DU9 C09 H6 SING N N 48 DU9 C09 H7 SING N N 49 DU9 C17 H8 SING N N 50 DU9 C17 H9 SING N N 51 DU9 C18 H10 SING N N 52 DU9 C19 H11 SING N N 53 DU9 C19 H12 SING N N 54 DU9 C19 H13 SING N N 55 DU9 C21 H14 SING N N 56 DU9 C22 H15 SING N N 57 DU9 C22 H16 SING N N 58 DU9 C22 H17 SING N N 59 DU9 C23 H18 SING N N 60 DU9 C23 H19 SING N N 61 DU9 C24 H20 SING N N 62 DU9 C27 H21 SING N N 63 DU9 C27 H22 SING N N 64 DU9 C27 H23 SING N N 65 DU9 C30 H24 SING N N 66 DU9 C30 H25 SING N N 67 DU9 C31 H26 SING N N 68 DU9 C31 H27 SING N N 69 DU9 C35 H28 SING N N 70 DU9 C35 H29 SING N N 71 DU9 C35 H30 SING N N 72 DU9 C36 H31 SING N N 73 DU9 C36 H32 SING N N 74 DU9 C37 H33 SING N N 75 DU9 C37 H34 SING N N 76 DU9 N05 H35 SING N N 77 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DU9 InChI InChI 1.03 "InChI=1S/C27H35FN6O3/c1-16-14-34(15-17(2)37-16)18-12-20(28)22-21(13-18)32(4)25(36)27(22)7-10-33(11-8-27)26-29-23-19(24(35)30-26)6-5-9-31(23)3/h12-13,16-17H,5-11,14-15H2,1-4H3,(H,29,30,35)/t16-,17+" DU9 InChIKey InChI 1.03 KZUPFZKALLNBBV-CALCHBBNSA-N DU9 SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1CN(C[C@H](C)O1)c2cc(F)c3c(c2)N(C)C(=O)C34CCN(CC4)C5=NC6=C(CCCN6C)C(=O)N5" DU9 SMILES CACTVS 3.385 "C[CH]1CN(C[CH](C)O1)c2cc(F)c3c(c2)N(C)C(=O)C34CCN(CC4)C5=NC6=C(CCCN6C)C(=O)N5" DU9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1CN(C[C@@H](O1)C)c2cc3c(c(c2)F)C4(CCN(CC4)C5=NC6=C(CCCN6C)C(=O)N5)C(=O)N3C" DU9 SMILES "OpenEye OEToolkits" 2.0.7 "CC1CN(CC(O1)C)c2cc3c(c(c2)F)C4(CCN(CC4)C5=NC6=C(CCCN6C)C(=O)N5)C(=O)N3C" # _pdbx_chem_comp_identifier.comp_id DU9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "6-[(2~{S},6~{R})-2,6-dimethylmorpholin-4-yl]-4-fluoranyl-1-methyl-1'-(8-methyl-4-oxidanylidene-3,5,6,7-tetrahydropyrido[2,3-d]pyrimidin-2-yl)spiro[indole-3,4'-piperidine]-2-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DU9 "Create component" 2019-08-28 PDBJ DU9 "Initial release" 2020-04-01 RCSB ##