data_DUT # _chem_comp.id DUT _chem_comp.name "DEOXYURIDINE-5'-TRIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H15 N2 O14 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-05-11 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 468.142 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DUT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1EXC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DUT N1 N1 N 0 1 N N N 10.615 -3.547 28.981 -0.317 0.514 5.166 N1 DUT 1 DUT C2 C2 C 0 1 N N N 10.825 -3.972 30.287 -0.972 -0.648 4.995 C2 DUT 2 DUT N3 N3 N 0 1 N N N 11.841 -4.875 30.442 -2.078 -0.930 5.708 N3 DUT 3 DUT C4 C4 C 0 1 N N N 12.650 -5.394 29.456 -2.554 -0.042 6.604 C4 DUT 4 DUT C5 C5 C 0 1 N N N 12.368 -4.918 28.136 -1.877 1.187 6.790 C5 DUT 5 DUT C6 C6 C 0 1 N N N 11.385 -4.032 27.948 -0.767 1.442 6.065 C6 DUT 6 DUT O2 O2 O 0 1 N N N 10.160 -3.581 31.232 -0.554 -1.459 4.191 O2 DUT 7 DUT O4 O4 O 0 1 N N N 13.530 -6.199 29.762 -3.558 -0.294 7.246 O4 DUT 8 DUT "C1'" C1* C 0 1 N N R 9.550 -2.561 28.740 0.886 0.791 4.379 "C1'" DUT 9 DUT "C2'" C2* C 0 1 N N N 10.048 -1.179 28.323 1.969 -0.274 4.659 "C2'" DUT 10 DUT "C3'" C3* C 0 1 N N S 9.892 -1.194 26.814 2.645 -0.492 3.287 "C3'" DUT 11 DUT "C4'" C4* C 0 1 N N R 8.668 -2.079 26.611 1.891 0.464 2.337 "C4'" DUT 12 DUT "O4'" O4* O 0 1 N N N 8.729 -3.048 27.680 0.606 0.669 2.967 "O4'" DUT 13 DUT "O3'" O3* O 0 1 N N N 9.673 0.107 26.251 4.030 -0.147 3.350 "O3'" DUT 14 DUT "C5'" C5* C 0 1 N N N 8.628 -2.791 25.280 1.713 -0.173 0.958 "C5'" DUT 15 DUT "O5'" O5* O 0 1 N N N 7.282 -2.797 24.753 0.951 0.701 0.123 "O5'" DUT 16 DUT PA PA P 0 1 N N R 6.061 -3.523 25.555 0.802 -0.028 -1.303 PA DUT 17 DUT O1A O1A O 0 1 N N N 6.373 -4.976 25.612 2.145 -0.265 -1.878 O1A DUT 18 DUT O2A O2A O 0 1 N N N 5.836 -2.745 26.802 0.046 -1.436 -1.109 O2A DUT 19 DUT O3A O3A O 0 1 N N N 4.724 -3.363 24.634 -0.049 0.906 -2.298 O3A DUT 20 DUT PB PB P 0 1 N N R 4.470 -3.576 23.039 -0.158 0.118 -3.698 PB DUT 21 DUT O1B O1B O 0 1 N N N 5.128 -2.445 22.338 -0.839 -1.177 -3.483 O1B DUT 22 DUT O2B O2B O 0 1 N N N 3.028 -3.856 22.834 1.318 -0.141 -4.283 O2B DUT 23 DUT O3B O3B O 0 1 N N N 5.269 -4.930 22.629 -1.003 1.001 -4.746 O3B DUT 24 DUT PG PG P 0 1 N N N 5.894 -5.447 21.219 -1.071 0.157 -6.116 PG DUT 25 DUT O1G O1G O 0 1 N N N 5.969 -6.960 21.342 -1.738 -1.139 -5.864 O1G DUT 26 DUT O2G O2G O 0 1 N N N 4.930 -4.991 20.136 -1.907 0.985 -7.215 O2G DUT 27 DUT O3G O3G O 0 1 N N N 7.251 -4.774 21.087 0.420 -0.103 -6.661 O3G DUT 28 DUT HN3 HN3 H 0 1 N N N 12.013 -5.195 31.394 -2.536 -1.775 5.575 HN3 DUT 29 DUT H5 H5 H 0 1 N N N 12.923 -5.242 27.239 -2.243 1.910 7.503 H5 DUT 30 DUT H6 H6 H 0 1 N N N 11.204 -3.692 26.914 -0.237 2.374 6.194 H6 DUT 31 DUT "H1'" H1* H 0 1 N N N 9.010 -2.439 29.708 1.266 1.787 4.606 "H1'" DUT 32 DUT "H2'1" 1H2* H 0 0 N N N 9.538 -0.328 28.833 1.513 -1.199 5.011 "H2'1" DUT 33 DUT "H2'2" 2H2* H 0 0 N N N 11.074 -0.928 28.680 2.692 0.097 5.386 "H2'2" DUT 34 DUT "H3'" H3* H 0 1 N N N 10.815 -1.558 26.306 2.525 -1.526 2.962 "H3'" DUT 35 DUT "H4'" H4* H 0 1 N N N 7.748 -1.448 26.620 2.427 1.410 2.250 "H4'" DUT 36 DUT "HO3'" *HO3 H 0 0 N N N 9.575 0.097 25.306 4.442 -0.756 3.978 "HO3'" DUT 37 DUT "H5'1" 1H5* H 0 0 N N N 9.356 -2.357 24.555 2.690 -0.345 0.507 "H5'1" DUT 38 DUT "H5'2" 2H5* H 0 0 N N N 9.052 -3.819 25.346 1.189 -1.123 1.062 "H5'2" DUT 39 DUT HOA2 2HOA H 0 0 N N N 5.124 -3.167 27.269 -0.822 -1.237 -0.733 HOA2 DUT 40 DUT HOB2 2HOB H 0 0 N N N 2.879 -3.980 21.903 1.726 0.726 -4.409 HOB2 DUT 41 DUT HOG2 2HOG H 0 0 N N N 5.295 -5.292 19.312 -1.924 0.446 -8.018 HOG2 DUT 42 DUT HOG3 3HOG H 0 0 N N N 7.616 -5.075 20.263 0.818 0.764 -6.812 HOG3 DUT 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DUT N1 C2 SING N N 1 DUT N1 C6 SING N N 2 DUT N1 "C1'" SING N N 3 DUT C2 N3 SING N N 4 DUT C2 O2 DOUB N N 5 DUT N3 C4 SING N N 6 DUT N3 HN3 SING N N 7 DUT C4 C5 SING N N 8 DUT C4 O4 DOUB N N 9 DUT C5 C6 DOUB N N 10 DUT C5 H5 SING N N 11 DUT C6 H6 SING N N 12 DUT "C1'" "C2'" SING N N 13 DUT "C1'" "O4'" SING N N 14 DUT "C1'" "H1'" SING N N 15 DUT "C2'" "C3'" SING N N 16 DUT "C2'" "H2'1" SING N N 17 DUT "C2'" "H2'2" SING N N 18 DUT "C3'" "C4'" SING N N 19 DUT "C3'" "O3'" SING N N 20 DUT "C3'" "H3'" SING N N 21 DUT "C4'" "O4'" SING N N 22 DUT "C4'" "C5'" SING N N 23 DUT "C4'" "H4'" SING N N 24 DUT "O3'" "HO3'" SING N N 25 DUT "C5'" "O5'" SING N N 26 DUT "C5'" "H5'1" SING N N 27 DUT "C5'" "H5'2" SING N N 28 DUT "O5'" PA SING N N 29 DUT PA O1A DOUB N N 30 DUT PA O2A SING N N 31 DUT PA O3A SING N N 32 DUT O2A HOA2 SING N N 33 DUT O3A PB SING N N 34 DUT PB O1B DOUB N N 35 DUT PB O2B SING N N 36 DUT PB O3B SING N N 37 DUT O2B HOB2 SING N N 38 DUT O3B PG SING N N 39 DUT PG O1G DOUB N N 40 DUT PG O2G SING N N 41 DUT PG O3G SING N N 42 DUT O2G HOG2 SING N N 43 DUT O3G HOG3 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DUT SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)CC2O" DUT SMILES_CANONICAL CACTVS 3.341 "O[C@H]1C[C@@H](O[C@@H]1CO[P@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O" DUT SMILES CACTVS 3.341 "O[CH]1C[CH](O[CH]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O" DUT SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)CO[P@@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O" DUT SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1N2C=CC(=O)NC2=O)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" DUT InChI InChI 1.03 "InChI=1S/C9H15N2O14P3/c12-5-3-8(11-2-1-7(13)10-9(11)14)23-6(5)4-22-27(18,19)25-28(20,21)24-26(15,16)17/h1-2,5-6,8,12H,3-4H2,(H,18,19)(H,20,21)(H,10,13,14)(H2,15,16,17)/t5-,6+,8+/m0/s1" DUT InChIKey InChI 1.03 AHCYMLUZIRLXAA-SHYZEUOFSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DUT "SYSTEMATIC NAME" ACDLabs 10.04 ;2'-deoxyuridine 5'-(tetrahydrogen triphosphate) ; DUT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(2,4-dioxopyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl (hydroxy-phosphonooxy-phosphoryl) hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DUT "Create component" 2000-05-11 RCSB DUT "Modify descriptor" 2011-06-04 RCSB #