data_DV6 # _chem_comp.id DV6 _chem_comp.name "[(2S)-3-[(2S)-2-(disulfanyl)-2,3-dihydro-1H-imidazol-4-yl]-1-oxidanyl-1-oxidanylidene-propan-2-yl]-trimethyl-azanium" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H18 N3 O2 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2019-09-03 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 264.388 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DV6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6KU2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DV6 C01 C1 C 0 1 N N N N N N -7.454 23.985 -1.678 -2.465 -1.016 -1.680 C01 DV6 1 DV6 C03 C2 C 0 1 N N N N N N -7.649 25.932 -0.260 -2.558 -2.199 0.405 C03 DV6 2 DV6 C04 C3 C 0 1 N N N N N N -5.577 25.533 -1.623 -0.455 -1.400 -0.428 C04 DV6 3 DV6 C05 C4 C 0 1 N N S N N N -6.178 23.933 0.334 -2.093 0.154 0.380 C05 DV6 4 DV6 C06 C5 C 0 1 N N N N N N -5.765 24.757 1.609 -3.569 0.393 0.577 C06 DV6 5 DV6 C09 C6 C 0 1 N N N N N N -4.985 23.029 0.038 -1.497 1.299 -0.441 C09 DV6 6 DV6 C10 C7 C 0 1 N N N N N N -4.879 21.952 0.976 0.006 1.190 -0.438 C10 DV6 7 DV6 C13 C8 C 0 1 N N S N N N -5.856 20.762 2.528 2.187 0.964 0.269 C13 DV6 8 DV6 N02 N1 N 1 1 N N N N N N -6.665 24.830 -0.788 -1.893 -1.115 -0.331 N02 DV6 9 DV6 O07 O1 O 0 1 N N N N N N -4.845 25.628 1.433 -4.373 -0.235 -0.069 O07 DV6 10 DV6 O08 O2 O 0 1 N N N N N N -6.351 24.472 2.689 -3.988 1.302 1.470 O08 DV6 11 DV6 C11 C9 C 0 1 N N N N N N -3.864 21.625 1.909 0.757 1.239 -1.517 C11 DV6 12 DV6 N12 N2 N 0 1 N N N N N N -4.402 20.479 2.608 2.114 1.110 -1.194 N12 DV6 13 DV6 S14 S1 S 0 1 N N N N N N -7.012 19.233 2.776 2.925 -0.633 0.710 S14 DV6 14 DV6 S15 S2 S 0 1 N N N N N N -6.227 17.827 1.310 4.895 -0.388 0.200 S15 DV6 15 DV6 N23 N3 N 0 1 N N N N N N -5.931 21.101 1.175 0.786 1.029 0.714 N23 DV6 16 DV6 H1 H1 H 0 1 N N N N N N -8.238 23.474 -1.100 -2.288 -1.947 -2.219 H1 DV6 17 DV6 H2 H2 H 0 1 N N N N N N -7.920 24.607 -2.456 -3.537 -0.836 -1.608 H2 DV6 18 DV6 H3 H3 H 0 1 N N N N N N -6.799 23.237 -2.149 -1.993 -0.191 -2.215 H3 DV6 19 DV6 H4 H4 H 0 1 N N N N N N -7.112 26.608 0.422 -2.085 -3.149 0.158 H4 DV6 20 DV6 H5 H5 H 0 1 N N N N N N -8.045 26.508 -1.110 -2.472 -2.017 1.476 H5 DV6 21 DV6 H6 H6 H 0 1 N N N N N N -8.481 25.453 0.278 -3.611 -2.234 0.125 H6 DV6 22 DV6 H7 H7 H 0 1 N N N N N N -4.970 26.176 -0.969 -0.011 -0.771 -1.199 H7 DV6 23 DV6 H8 H8 H 0 1 N N N N N N -4.932 24.777 -2.095 0.022 -1.191 0.530 H8 DV6 24 DV6 H9 H9 H 0 1 N N N N N N -6.052 26.147 -2.402 -0.309 -2.449 -0.686 H9 DV6 25 DV6 H10 H10 H 0 1 N N N N N N -7.017 23.286 0.629 -1.600 0.109 1.352 H10 DV6 26 DV6 H11 H11 H 0 1 N N N N N N -5.100 22.609 -0.972 -1.864 1.240 -1.466 H11 DV6 27 DV6 H12 H12 H 0 1 N N N N N N -4.065 23.630 0.083 -1.793 2.253 -0.004 H12 DV6 28 DV6 H14 H14 H 0 1 N N N N N N -6.187 21.548 3.222 2.761 1.781 0.705 H14 DV6 29 DV6 H15 H15 H 0 1 N N N N N N -6.006 25.013 3.390 -4.944 1.420 1.561 H15 DV6 30 DV6 H16 H16 H 0 1 N N N N N N -2.914 22.115 2.062 0.378 1.363 -2.520 H16 DV6 31 DV6 H18 H18 H 0 1 N N N N N N -4.168 19.623 2.147 2.860 1.112 -1.814 H18 DV6 32 DV6 H20 H20 H 0 1 N N N N N N -7.005 16.799 1.478 5.443 -1.572 0.527 H20 DV6 33 DV6 H21 H21 H 0 1 N N N N N N -6.798 21.557 0.972 0.465 0.969 1.628 H21 DV6 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DV6 C01 N02 SING N N 1 DV6 C04 N02 SING N N 2 DV6 N02 C03 SING N N 3 DV6 N02 C05 SING N N 4 DV6 C09 C05 SING N N 5 DV6 C09 C10 SING N N 6 DV6 C05 C06 SING N N 7 DV6 C10 N23 SING N N 8 DV6 C10 C11 DOUB N N 9 DV6 N23 C13 SING N N 10 DV6 S15 S14 SING N N 11 DV6 O07 C06 DOUB N N 12 DV6 C06 O08 SING N N 13 DV6 C11 N12 SING N N 14 DV6 C13 N12 SING N N 15 DV6 C13 S14 SING N N 16 DV6 C01 H1 SING N N 17 DV6 C01 H2 SING N N 18 DV6 C01 H3 SING N N 19 DV6 C03 H4 SING N N 20 DV6 C03 H5 SING N N 21 DV6 C03 H6 SING N N 22 DV6 C04 H7 SING N N 23 DV6 C04 H8 SING N N 24 DV6 C04 H9 SING N N 25 DV6 C05 H10 SING N N 26 DV6 C09 H11 SING N N 27 DV6 C09 H12 SING N N 28 DV6 C13 H14 SING N N 29 DV6 O08 H15 SING N N 30 DV6 C11 H16 SING N N 31 DV6 N12 H18 SING N N 32 DV6 S15 H20 SING N N 33 DV6 N23 H21 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DV6 InChI InChI 1.03 "InChI=1S/C9H17N3O2S2/c1-12(2,3)7(8(13)14)4-6-5-10-9(11-6)16-15/h5,7,9-11H,4H2,1-3H3,(H-,13,14,15)/p+1/t7-,9-/m0/s1" DV6 InChIKey InChI 1.03 XGMLHKDWXWTLLL-CBAPKCEASA-O DV6 SMILES_CANONICAL CACTVS 3.385 "C[N+](C)(C)[C@@H](CC1=CN[C@@H](N1)SS)C(O)=O" DV6 SMILES CACTVS 3.385 "C[N+](C)(C)[CH](CC1=CN[CH](N1)SS)C(O)=O" DV6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[N+](C)(C)[C@@H](CC1=CN[C@@H](N1)SS)C(=O)O" DV6 SMILES "OpenEye OEToolkits" 2.0.7 "C[N+](C)(C)C(CC1=CNC(N1)SS)C(=O)O" # _pdbx_chem_comp_identifier.comp_id DV6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{S})-3-[(2~{S})-2-(disulfanyl)-2,3-dihydro-1~{H}-imidazol-4-yl]-1-oxidanyl-1-oxidanylidene-propan-2-yl]-trimethyl-azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DV6 "Create component" 2019-09-03 PDBJ DV6 "Initial release" 2020-08-26 RCSB DV6 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id DV6 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom S15 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #