data_DV9 # _chem_comp.id DV9 _chem_comp.name "(2S)-2-azanyl-6,6-bis(fluoranyl)-5-oxidanylidene-6-phosphono-hexanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H10 F2 N O6 P" _chem_comp.mon_nstd_parent_comp_id GLU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-09-06 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 261.117 _chem_comp.one_letter_code E _chem_comp.three_letter_code DV9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6KV8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DV9 CA CA C 0 1 N N S Y N N 9.214 -6.026 -33.394 -3.406 -0.525 0.267 CA DV9 1 DV9 C C C 0 1 N N N Y N Y 7.871 -6.750 -33.335 -4.558 0.423 0.058 C DV9 2 DV9 CB CB C 0 1 N N N N N N 9.585 -5.449 -32.020 -2.089 0.201 -0.015 CB DV9 3 DV9 CG CG C 0 1 N N N N N N 9.852 -6.568 -30.994 -0.915 -0.722 0.317 CG DV9 4 DV9 CD CD C 0 1 N N N N N N 11.344 -6.727 -30.641 0.381 -0.007 0.039 CD DV9 5 DV9 C45 C45 C 0 1 N N N N N N 11.870 -6.478 -29.220 1.694 -0.704 0.285 C45 DV9 6 DV9 F01 F01 F 0 1 N N N N N N 12.495 -5.276 -29.213 1.788 -1.060 1.635 F01 DV9 7 DV9 F02 F02 F 0 1 N N N N N N 10.844 -6.465 -28.318 1.767 -1.855 -0.506 F02 DV9 8 DV9 N N N 0 1 N N N Y Y N 9.050 -4.987 -34.431 -3.540 -1.668 -0.646 N DV9 9 DV9 O O O 0 1 N N N Y N Y 7.789 -7.918 -33.549 -5.191 0.387 -0.970 O DV9 10 DV9 OE1 OE1 O 0 1 N N N N N N 12.112 -7.051 -31.480 0.368 1.125 -0.381 OE1 DV9 11 DV9 O14 O14 O 0 1 N N N N N N 13.961 -8.289 -30.041 2.983 1.741 0.768 O14 DV9 12 DV9 O15 O15 O 0 1 N N N N N N 12.645 -8.787 -27.874 4.357 -0.268 0.099 O15 DV9 13 DV9 O16 O16 O 0 1 N N N N N N 14.120 -7.076 -27.797 2.960 0.826 -1.697 O16 DV9 14 DV9 P01 P01 P 0 1 N N N N N N 13.172 -7.712 -28.712 3.067 0.417 -0.143 P01 DV9 15 DV9 HA H40 H 0 1 N N N Y N N 9.992 -6.739 -33.703 -3.411 -0.881 1.297 H40 DV9 16 DV9 H42 H42 H 0 1 N N N N N N 10.491 -4.834 -32.123 -2.046 0.479 -1.068 H42 DV9 17 DV9 H41 H41 H 0 1 N N N N N N 8.756 -4.823 -31.659 -2.030 1.099 0.601 H41 DV9 18 DV9 H43 H43 H 0 1 N N N N N N 9.298 -6.336 -30.072 -0.959 -1.001 1.370 H43 DV9 19 DV9 H44 H44 H 0 1 N N N N N N 9.489 -7.519 -31.411 -0.974 -1.620 -0.299 H44 DV9 20 DV9 H2 H2 H 0 1 N Y N Y Y N 9.901 -4.470 -34.523 -3.538 -1.364 -1.609 H2 DV9 21 DV9 H H3 H 0 1 N N N Y Y N 8.828 -5.420 -35.304 -2.815 -2.350 -0.481 H3 DV9 22 DV9 H59 H59 H 0 1 N N N N N N 13.938 -9.239 -30.036 2.163 2.241 0.660 H59 DV9 23 DV9 H4 H4 H 0 1 N N N N N N 14.111 -7.532 -26.964 3.660 1.423 -1.995 H4 DV9 24 DV9 OXT OXT O 0 1 N Y N Y N Y 6.657 -5.978 -33.086 -4.880 1.309 1.014 OXT DV9 25 DV9 HXT H1 H 0 1 N Y N Y N Y 5.901 -6.552 -33.131 -5.627 1.896 0.834 H1 DV9 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DV9 N CA SING N N 1 DV9 O C DOUB N N 2 DV9 CA C SING N N 3 DV9 CA CB SING N N 4 DV9 CB CG SING N N 5 DV9 OE1 CD DOUB N N 6 DV9 CG CD SING N N 7 DV9 CD C45 SING N N 8 DV9 O14 P01 SING N N 9 DV9 C45 F01 SING N N 10 DV9 C45 P01 SING N N 11 DV9 C45 F02 SING N N 12 DV9 P01 O15 DOUB N N 13 DV9 P01 O16 SING N N 14 DV9 CA HA SING N N 15 DV9 CB H42 SING N N 16 DV9 CB H41 SING N N 17 DV9 CG H43 SING N N 18 DV9 CG H44 SING N N 19 DV9 N H2 SING N N 20 DV9 N H SING N N 21 DV9 O14 H59 SING N N 22 DV9 O16 H4 SING N N 23 DV9 C OXT SING N N 24 DV9 OXT HXT SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DV9 InChI InChI 1.03 "InChI=1S/C6H10F2NO6P/c7-6(8,16(13,14)15)4(10)2-1-3(9)5(11)12/h3H,1-2,9H2,(H,11,12)(H2,13,14,15)/t3-/m0/s1" DV9 InChIKey InChI 1.03 LABOZNZPTQOSFU-VKHMYHEASA-N DV9 SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCC(=O)C(F)(F)[P](O)(O)=O)C(O)=O" DV9 SMILES CACTVS 3.385 "N[CH](CCC(=O)C(F)(F)[P](O)(O)=O)C(O)=O" DV9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CC(=O)C(F)(F)P(=O)(O)O)[C@@H](C(=O)O)N" DV9 SMILES "OpenEye OEToolkits" 2.0.7 "C(CC(=O)C(F)(F)P(=O)(O)O)C(C(=O)O)N" # _pdbx_chem_comp_identifier.comp_id DV9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-6,6-bis(fluoranyl)-5-oxidanylidene-6-phosphono-hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DV9 "Create component" 2019-09-06 PDBJ DV9 "Initial release" 2021-09-08 RCSB DV9 "Modify backbone" 2023-11-03 PDBE #