data_DVC
# 
_chem_comp.id                                    DVC 
_chem_comp.name                                  "(2R,4S,6S)-4-azanyl-4,6-dimethyl-oxane-2,5,5-triol" 
_chem_comp.type                                  "L-saccharide, alpha linking" 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C7 H15 N O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-01-10 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        177.198 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DVC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1HHZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DVC C1   C1   C 0 1 N N R N N N 38.306 -1.352 19.324 1.757  0.636  -0.598 C1   DVC 1  
DVC O1   O1   O 0 1 N Y N N N N 37.243 -0.868 20.139 2.355  0.551  0.697  O1   DVC 2  
DVC C2   C2   C 0 1 N N N N N N 38.189 -2.830 19.228 1.234  -0.742 -1.011 C2   DVC 3  
DVC C3   C3   C 0 1 N N S N N N 37.063 -3.302 18.265 0.148  -1.183 -0.026 C3   DVC 4  
DVC N3   N3   N 0 1 N N N N N N 37.311 -4.731 17.957 -0.412 -2.472 -0.456 N3   DVC 5  
DVC C4   C4   C 0 1 N N N N N N 37.192 -2.528 16.945 -0.960 -0.126 0.004  C4   DVC 6  
DVC O4   O4   O 0 1 N N N N N N 38.333 -2.911 16.282 -1.569 -0.036 -1.286 O4   DVC 7  
DVC C5   C5   C 0 1 N N S N N N 37.218 -1.006 17.233 -0.352 1.229  0.377  C5   DVC 8  
DVC O5   O5   O 0 1 N N N N N N 38.301 -0.647 18.047 0.672  1.565  -0.561 O5   DVC 9  
DVC C6   C6   C 0 1 N N N N N N 37.464 -0.172 15.923 -1.442 2.302  0.350  C6   DVC 10 
DVC C3M  C3M  C 0 1 N N N N N N 35.725 -3.163 18.920 0.753  -1.329 1.372  C3M  DVC 11 
DVC O41  O41  O 0 1 N N N N N N 36.186 -2.833 16.065 -1.944 -0.492 0.973  O41  DVC 12 
DVC H1   H1   H 0 1 N N N N N N 39.294 -1.147 19.763 2.500  0.975  -1.320 H1   DVC 13 
DVC HO1  HO1  H 0 1 N Y N N N N 37.247 -1.327 20.971 2.709  1.390  1.023  HO1  DVC 14 
DVC H2   H2   H 0 1 N N N N N N 39.146 -3.226 18.857 0.814  -0.686 -2.015 H2   DVC 15 
DVC H2A  H2A  H 0 1 N N N N N N 37.968 -3.222 20.232 2.053  -1.461 -0.998 H2A  DVC 16 
DVC HN3  HN3  H 0 1 N N N N N N 36.602 -5.067 17.337 0.303  -3.183 -0.488 HN3  DVC 17 
DVC HN3A HN3A H 0 0 N N N N N N 38.206 -4.828 17.522 -1.174 -2.753 0.142  HN3A DVC 18 
DVC HO4  HO4  H 0 1 N N N N N N 38.404 -2.427 15.467 -2.281 0.616  -1.341 HO4  DVC 19 
DVC H5   H5   H 0 1 N N N N N N 36.245 -0.797 17.701 0.076  1.171  1.378  H5   DVC 20 
DVC H6   H6   H 0 1 N N N N N N 37.476 0.900  16.167 -2.224 2.045  1.065  H6   DVC 21 
DVC H6A  H6A  H 0 1 N N N N N N 38.430 -0.458 15.482 -1.010 3.266  0.616  H6A  DVC 22 
DVC H6B  H6B  H 0 1 N N N N N N 36.658 -0.375 15.203 -1.870 2.360  -0.651 H6B  DVC 23 
DVC H3M  H3M  H 0 1 N N N N N N 34.940 -3.500 18.227 1.006  -0.344 1.763  H3M  DVC 24 
DVC H3MA H3MA H 0 0 N N N N N N 35.698 -3.778 19.832 0.030  -1.807 2.033  H3MA DVC 25 
DVC H3MB H3MB H 0 0 N N N N N N 35.553 -2.109 19.183 1.653  -1.940 1.316  H3MB DVC 26 
DVC HO41 HO41 H 0 0 N N N N N N 36.303 -2.335 15.265 -2.677 0.135  1.045  HO41 DVC 27 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DVC O5  C1   SING N N 1  
DVC C2  C1   SING N N 2  
DVC C1  O1   SING N N 3  
DVC C1  H1   SING N N 4  
DVC O1  HO1  SING N N 5  
DVC C3  C2   SING N N 6  
DVC C2  H2   SING N N 7  
DVC C2  H2A  SING N N 8  
DVC C4  C3   SING N N 9  
DVC N3  C3   SING N N 10 
DVC C3  C3M  SING N N 11 
DVC N3  HN3  SING N N 12 
DVC N3  HN3A SING N N 13 
DVC O41 C4   SING N N 14 
DVC O4  C4   SING N N 15 
DVC C4  C5   SING N N 16 
DVC O4  HO4  SING N N 17 
DVC C6  C5   SING N N 18 
DVC C5  O5   SING N N 19 
DVC C5  H5   SING N N 20 
DVC C6  H6   SING N N 21 
DVC C6  H6A  SING N N 22 
DVC C6  H6B  SING N N 23 
DVC C3M H3M  SING N N 24 
DVC C3M H3MA SING N N 25 
DVC C3M H3MB SING N N 26 
DVC O41 HO41 SING N N 27 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DVC SMILES           ACDLabs              12.01 "OC1OC(C(O)(O)C(N)(C)C1)C"                                                               
DVC SMILES_CANONICAL CACTVS               3.370 "C[C@@H]1O[C@@H](O)C[C@](C)(N)C1(O)O"                                                    
DVC SMILES           CACTVS               3.370 "C[CH]1O[CH](O)C[C](C)(N)C1(O)O"                                                         
DVC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C[C@H]1C([C@@](C[C@@H](O1)O)(C)N)(O)O"                                                  
DVC SMILES           "OpenEye OEToolkits" 1.7.0 "CC1C(C(CC(O1)O)(C)N)(O)O"                                                               
DVC InChI            InChI                1.03  "InChI=1S/C7H15NO4/c1-4-7(10,11)6(2,8)3-5(9)12-4/h4-5,9-11H,3,8H2,1-2H3/t4-,5+,6-/m0/s1" 
DVC InChIKey         InChI                1.03  ATGUYZRYRGIDLC-JKUQZMGJSA-N                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DVC "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,4S,6S)-4-amino-4,6-dimethyldihydro-2H-pyran-2,5,5(6H)-triol (non-preferred name)" 
DVC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2R,4S,6S)-4-azanyl-4,6-dimethyl-oxane-2,5,5-triol"                                   
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
DVC "CARBOHYDRATE ISOMER"                 L        PDB ? 
DVC "CARBOHYDRATE RING"                   pyranose PDB ? 
DVC "CARBOHYDRATE ANOMER"                 alpha    PDB ? 
DVC "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DVC "Create component"    2011-01-10 RCSB 
DVC "Modify descriptor"   2011-06-04 RCSB 
DVC "Other modification"  2020-07-03 RCSB 
DVC "Modify linking type" 2020-07-17 RCSB 
DVC "Modify PCM"          2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            DVC 
_pdbx_chem_comp_pcm.modified_residue_id                OMY 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Carbohydrate 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ODE 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
#