data_DVN # _chem_comp.id DVN _chem_comp.name "[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4R,5S)-3,4,5-tris(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H24 N5 O17 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-06-12 _chem_comp.pdbx_modified_date 2013-03-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 639.296 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DVN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4F46 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DVN "O3'" "O3'" O 0 1 N N N -402.500 -933.545 -2.700 7.877 2.835 -1.297 "O3'" DVN 1 DVN "C3'" "C3'" C 0 1 N N S -401.681 -933.497 -1.463 8.169 1.713 -0.462 "C3'" DVN 2 DVN "C2'" "C2'" C 0 1 N N R -401.365 -932.074 -0.977 8.972 2.158 0.781 "C2'" DVN 3 DVN "O2'" "O2'" O 0 1 N N N -401.218 -931.172 -2.085 9.200 3.568 0.752 "O2'" DVN 4 DVN "C1'" "C1'" C 0 1 N N S -402.588 -931.733 -0.109 8.061 1.781 1.970 "C1'" DVN 5 DVN "O1'" "O1'" O 0 1 N N N -403.641 -931.159 -0.881 7.270 2.904 2.366 "O1'" DVN 6 DVN "O4'" "O4'" O 0 1 N N N -403.108 -932.985 0.389 7.216 0.723 1.468 "O4'" DVN 7 DVN "C4'" "C4'" C 0 1 N N R -402.388 -934.096 -0.244 6.868 1.121 0.123 "C4'" DVN 8 DVN "C5'" "C5'" C 0 1 N N N -401.359 -934.586 0.758 6.422 -0.095 -0.692 "C5'" DVN 9 DVN "O5'" "O5'" O 0 1 N N N -402.158 -934.922 1.922 5.160 -0.556 -0.208 "O5'" DVN 10 DVN PBM PBM P 0 1 N N N -402.345 -936.438 2.530 4.389 -1.823 -0.836 PBM DVN 11 DVN OAK OAK O 0 1 N N N -400.878 -937.110 2.629 5.253 -3.157 -0.581 OAK DVN 12 DVN OAC OAC O 0 1 N N N -403.278 -937.222 1.667 4.212 -1.620 -2.291 OAC DVN 13 DVN OAY OAY O 0 1 N N N -402.996 -936.313 3.996 2.947 -1.975 -0.136 OAY DVN 14 DVN PBN PBN P 0 1 N N N -402.439 -935.432 5.240 1.612 -2.799 -0.494 PBN DVN 15 DVN OAL OAL O 0 1 N N N -401.550 -936.478 6.106 1.790 -4.333 -0.039 OAL DVN 16 DVN OAD OAD O 0 1 N N N -403.622 -934.928 5.981 1.373 -2.742 -1.954 OAD DVN 17 DVN OAU OAU O 0 1 N N N -401.482 -934.243 4.700 0.358 -2.152 0.281 OAU DVN 18 DVN CAP CAP C 0 1 N N N -401.964 -932.925 4.338 -0.988 -2.594 0.089 CAP DVN 19 DVN CBH CBH C 0 1 N N R -400.865 -931.900 4.634 -1.926 -1.771 0.974 CBH DVN 20 DVN OAW OAW O 0 1 N N N -400.769 -931.877 6.074 -1.944 -0.404 0.529 OAW DVN 21 DVN CBF CBF C 0 1 N N R -399.494 -932.348 4.119 -3.365 -2.310 0.856 CBF DVN 22 DVN OAH OAH O 0 1 N N N -398.696 -931.219 3.777 -3.842 -2.743 2.131 OAH DVN 23 DVN CBI CBI C 0 1 N N R -398.856 -933.036 5.324 -4.185 -1.096 0.354 CBI DVN 24 DVN OAX OAX O 0 1 N N N -397.403 -933.006 5.240 -5.447 -1.024 1.019 OAX DVN 25 DVN PBL PBL P 0 1 N N N -396.572 -934.383 5.488 -6.854 -1.059 0.237 PBL DVN 26 DVN OAI OAI O 0 1 N N N -395.016 -933.926 5.549 -6.987 0.254 -0.687 OAI DVN 27 DVN OAJ OAJ O 0 1 N N N -396.767 -935.274 4.140 -6.915 -2.269 -0.613 OAJ DVN 28 DVN OAB OAB O 0 1 N N N -397.038 -935.105 6.708 -8.060 -1.089 1.302 OAB DVN 29 DVN CBJ CBJ C 0 1 N N R -399.390 -932.148 6.447 -3.279 0.096 0.756 CBJ DVN 30 DVN N9 N9 N 0 1 Y N N -399.495 -932.820 7.771 -3.547 1.257 -0.096 N9 DVN 31 DVN C8 C8 C 0 1 Y N N -399.948 -934.046 8.041 -2.921 1.558 -1.269 C8 DVN 32 DVN N7 N7 N 0 1 Y N N -399.900 -934.233 9.364 -3.407 2.661 -1.762 N7 DVN 33 DVN C5 C5 C 0 1 Y N N -399.415 -933.117 9.918 -4.372 3.136 -0.939 C5 DVN 34 DVN C4 C4 C 0 1 Y N N -399.177 -932.234 8.926 -4.477 2.238 0.138 C4 DVN 35 DVN N3 N3 N 0 1 Y N N -398.688 -931.002 9.180 -5.368 2.478 1.094 N3 DVN 36 DVN C2 C2 C 0 1 Y N N -398.426 -930.639 10.498 -6.145 3.539 1.036 C2 DVN 37 DVN N1 N1 N 0 1 Y N N -398.693 -931.576 11.508 -6.085 4.409 0.045 N1 DVN 38 DVN C6 C6 C 0 1 Y N N -399.177 -932.787 11.195 -5.220 4.256 -0.953 C6 DVN 39 DVN N6 N6 N 0 1 N N N -399.443 -933.710 12.138 -5.166 5.172 -1.989 N6 DVN 40 DVN H1 H1 H 0 1 N N N -402.656 -934.450 -2.942 8.661 3.283 -1.643 H1 DVN 41 DVN H2 H2 H 0 1 N N N -400.735 -934.035 -1.627 8.719 0.956 -1.021 H2 DVN 42 DVN H3 H3 H 0 1 N N N -400.459 -932.087 -0.353 9.917 1.619 0.838 H3 DVN 43 DVN H4 H4 H 0 1 N N N -401.023 -930.300 -1.761 9.700 3.902 1.509 H4 DVN 44 DVN H5 H5 H 0 1 N N N -402.287 -931.071 0.716 8.659 1.423 2.808 H5 DVN 45 DVN H6 H6 H 0 1 N N N -404.378 -930.961 -0.315 6.678 2.726 3.110 H6 DVN 46 DVN H7 H7 H 0 1 N N N -403.068 -934.907 -0.543 6.082 1.875 0.142 H7 DVN 47 DVN H8 H8 H 0 1 N N N -400.828 -935.470 0.376 6.328 0.187 -1.741 H8 DVN 48 DVN H9 H9 H 0 1 N N N -400.632 -933.795 0.994 7.162 -0.889 -0.594 H9 DVN 49 DVN H10 H10 H 0 1 N N N -400.858 -937.906 2.111 5.409 -3.352 0.354 H10 DVN 50 DVN H11 H11 H 0 1 N N N -401.944 -936.596 6.962 1.950 -4.447 0.907 H11 DVN 51 DVN H12 H12 H 0 1 N N N -402.862 -932.685 4.926 -1.268 -2.464 -0.956 H12 DVN 52 DVN H13 H13 H 0 1 N N N -402.211 -932.903 3.266 -1.066 -3.648 0.358 H13 DVN 53 DVN H14 H14 H 0 1 N N N -401.132 -930.915 4.223 -1.594 -1.818 2.011 H14 DVN 54 DVN H15 H15 H 0 1 N N N -399.604 -933.052 3.281 -3.409 -3.125 0.134 H15 DVN 55 DVN H16 H16 H 0 1 N N N -397.850 -931.513 3.460 -3.328 -3.464 2.520 H16 DVN 56 DVN H17 H17 H 0 1 N N N -399.236 -934.063 5.429 -4.318 -1.137 -0.727 H17 DVN 57 DVN H18 H18 H 0 1 N N N -394.554 -934.271 4.794 -6.955 1.086 -0.195 H18 DVN 58 DVN H19 H19 H 0 1 N N N -397.366 -935.962 6.463 -8.940 -1.111 0.900 H19 DVN 59 DVN H20 H20 H 0 1 N N N -398.801 -931.222 6.519 -3.421 0.349 1.807 H20 DVN 60 DVN H21 H21 H 0 1 N N N -400.295 -934.765 7.314 -2.138 0.969 -1.723 H21 DVN 61 DVN H22 H22 H 0 1 N N N -398.028 -929.664 10.737 -6.859 3.704 1.830 H22 DVN 62 DVN H23 H23 H 0 1 N N N -399.224 -933.338 13.040 -4.536 5.044 -2.717 H23 DVN 63 DVN H24 H24 H 0 1 N N N -400.413 -933.952 12.103 -5.756 5.941 -1.988 H24 DVN 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DVN "O3'" "C3'" SING N N 1 DVN "O2'" "C2'" SING N N 2 DVN "C3'" "C2'" SING N N 3 DVN "C3'" "C4'" SING N N 4 DVN "C2'" "C1'" SING N N 5 DVN "O1'" "C1'" SING N N 6 DVN "C4'" "O4'" SING N N 7 DVN "C4'" "C5'" SING N N 8 DVN "C1'" "O4'" SING N N 9 DVN "C5'" "O5'" SING N N 10 DVN OAC PBM DOUB N N 11 DVN "O5'" PBM SING N N 12 DVN PBM OAK SING N N 13 DVN PBM OAY SING N N 14 DVN OAH CBF SING N N 15 DVN OAY PBN SING N N 16 DVN CBF CBH SING N N 17 DVN CBF CBI SING N N 18 DVN OAJ PBL DOUB N N 19 DVN CAP CBH SING N N 20 DVN CAP OAU SING N N 21 DVN CBH OAW SING N N 22 DVN OAU PBN SING N N 23 DVN PBN OAD DOUB N N 24 DVN PBN OAL SING N N 25 DVN OAX CBI SING N N 26 DVN OAX PBL SING N N 27 DVN CBI CBJ SING N N 28 DVN PBL OAI SING N N 29 DVN PBL OAB SING N N 30 DVN OAW CBJ SING N N 31 DVN CBJ N9 SING N N 32 DVN N9 C8 SING Y N 33 DVN N9 C4 SING Y N 34 DVN C8 N7 DOUB Y N 35 DVN C4 N3 DOUB Y N 36 DVN C4 C5 SING Y N 37 DVN N3 C2 SING Y N 38 DVN N7 C5 SING Y N 39 DVN C5 C6 DOUB Y N 40 DVN C2 N1 DOUB Y N 41 DVN C6 N1 SING Y N 42 DVN C6 N6 SING N N 43 DVN "O3'" H1 SING N N 44 DVN "C3'" H2 SING N N 45 DVN "C2'" H3 SING N N 46 DVN "O2'" H4 SING N N 47 DVN "C1'" H5 SING N N 48 DVN "O1'" H6 SING N N 49 DVN "C4'" H7 SING N N 50 DVN "C5'" H8 SING N N 51 DVN "C5'" H9 SING N N 52 DVN OAK H10 SING N N 53 DVN OAL H11 SING N N 54 DVN CAP H12 SING N N 55 DVN CAP H13 SING N N 56 DVN CBH H14 SING N N 57 DVN CBF H15 SING N N 58 DVN OAH H16 SING N N 59 DVN CBI H17 SING N N 60 DVN OAI H18 SING N N 61 DVN OAB H19 SING N N 62 DVN CBJ H20 SING N N 63 DVN C8 H21 SING N N 64 DVN C2 H22 SING N N 65 DVN N6 H23 SING N N 66 DVN N6 H24 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DVN SMILES ACDLabs 12.01 "O=P(O)(O)OC3C(O)C(OC3n1c2ncnc(N)c2nc1)COP(=O)(O)OP(=O)(O)OCC4OC(O)C(O)C4O" DVN InChI InChI 1.03 "InChI=1S/C15H24N5O17P3/c16-12-7-13(18-3-17-12)20(4-19-7)14-11(36-38(25,26)27)9(22)6(34-14)2-33-40(30,31)37-39(28,29)32-1-5-8(21)10(23)15(24)35-5/h3-6,8-11,14-15,21-24H,1-2H2,(H,28,29)(H,30,31)(H2,16,17,18)(H2,25,26,27)/t5-,6-,8-,9-,10-,11-,14-,15+/m1/s1" DVN InChIKey InChI 1.03 ICNHOLCERMYLRZ-ZQSHOCFMSA-N DVN SMILES_CANONICAL CACTVS 3.370 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H](O)[C@H](O)[C@@H]4O)[C@@H](O)[C@H]3O[P](O)(O)=O" DVN SMILES CACTVS 3.370 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH](O)[CH](O)[CH]4O)[CH](O)[CH]3O[P](O)(O)=O" DVN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@H](O4)O)O)O)O)OP(=O)(O)O)N" DVN SMILES "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)O)O)O)O)OP(=O)(O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DVN "SYSTEMATIC NAME" ACDLabs 12.01 "[(2R,3R,4R,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxy-4-(phosphonooxy)tetrahydrofuran-2-yl]methyl [(2R,3S,4R,5S)-3,4,5-trihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)" DVN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4R,5S)-3,4,5-tris(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DVN "Create component" 2012-06-12 PDBJ DVN "Initial release" 2013-04-03 RCSB #