data_DWK # _chem_comp.id DWK _chem_comp.name "[2-[2-oxidanylidene-2-[[3-[3-[2-[2-[3-[[4-[2-(2-phosphonophenoxy)ethanoylamino]phenyl]carbonylamino]propoxy]ethoxy]ethoxy]propylcarbamoyl]phenyl]amino]ethoxy]phenyl]phosphonic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C40 H48 N4 O15 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-02-03 _chem_comp.pdbx_modified_date 2018-06-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 886.774 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DWK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6FNC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DWK OAE O1 O 0 1 N N N 5.019 7.506 6.585 10.809 -4.870 2.729 OAE DWK 1 DWK PBN P1 P 0 1 N N N 5.579 8.299 5.318 10.599 -5.452 1.242 PBN DWK 2 DWK OAF O2 O 0 1 N N N 4.671 7.758 4.142 10.033 -6.817 1.322 OAF DWK 3 DWK OAD O3 O 0 1 N N N 6.959 7.853 5.039 9.588 -4.498 0.430 OAD DWK 4 DWK CBM C1 C 0 1 Y N N 5.280 10.042 5.529 12.197 -5.509 0.384 CBM DWK 5 DWK CAN C2 C 0 1 Y N N 4.733 10.498 6.730 12.985 -6.640 0.466 CAN DWK 6 DWK CAI C3 C 0 1 Y N N 4.498 11.859 6.916 14.203 -6.684 -0.187 CAI DWK 7 DWK CAH C4 C 0 1 Y N N 4.812 12.770 5.912 14.634 -5.596 -0.924 CAH DWK 8 DWK CAM C5 C 0 1 Y N N 5.358 12.332 4.708 13.849 -4.463 -1.009 CAM DWK 9 DWK CBL C6 C 0 1 Y N N 5.603 10.964 4.521 12.625 -4.418 -0.359 CBL DWK 10 DWK OBG O4 O 0 1 N N N 6.127 10.444 3.368 11.851 -3.304 -0.441 OBG DWK 11 DWK CAZ C7 C 0 1 N N N 7.085 11.198 2.596 12.361 -2.215 -1.214 CAZ DWK 12 DWK CBH C8 C 0 1 N N N 8.161 10.259 2.024 11.373 -1.077 -1.190 CBH DWK 13 DWK OAB O5 O 0 1 N N N 8.941 10.677 1.169 10.335 -1.187 -0.572 OAB DWK 14 DWK NBC N1 N 0 1 N N N 8.158 9.008 2.536 11.644 0.064 -1.855 NBC DWK 15 DWK CBJ C9 C 0 1 Y N N 9.068 8.114 2.148 10.687 1.083 -1.914 CBJ DWK 16 DWK CAO C10 C 0 1 Y N N 10.052 7.724 3.062 9.862 1.322 -0.826 CAO DWK 17 DWK CAK C11 C 0 1 Y N N 9.042 7.554 0.869 10.568 1.860 -3.060 CAK DWK 18 DWK CAJ C12 C 0 1 Y N N 10.011 6.617 0.506 9.625 2.868 -3.123 CAJ DWK 19 DWK CAL C13 C 0 1 Y N N 10.993 6.233 1.424 8.795 3.111 -2.048 CAL DWK 20 DWK CBK C14 C 0 1 Y N N 11.023 6.783 2.710 8.910 2.340 -0.890 CBK DWK 21 DWK CBI C15 C 0 1 N N N 12.007 6.420 3.640 8.021 2.598 0.264 CBI DWK 22 DWK OAC O6 O 0 1 N N N 11.692 6.012 4.758 8.123 1.925 1.271 OAC DWK 23 DWK NBB N2 N 0 1 N N N 13.283 6.608 3.236 7.099 3.578 0.198 NBB DWK 24 DWK CAS C16 C 0 1 N N N 14.477 6.333 4.039 6.219 3.833 1.341 CAS DWK 25 DWK CAQ C17 C 0 1 N N N 14.462 7.272 5.272 5.272 4.989 1.008 CAQ DWK 26 DWK CAU C18 C 0 1 N N N 14.506 8.758 4.858 4.353 5.255 2.202 CAU DWK 27 DWK OBE O7 O 0 1 N N N 13.173 9.305 4.736 3.470 6.334 1.891 OBE DWK 28 DWK CAW C19 C 0 1 N N N 13.128 10.675 5.112 2.563 6.666 2.945 CAW DWK 29 DWK CAY C20 C 0 1 N N N 12.063 11.365 4.223 1.671 7.827 2.504 CAY DWK 30 DWK OBF O8 O 0 1 N N N 10.773 11.457 4.871 0.846 7.408 1.415 OBF DWK 31 DWK CAX C21 C 0 1 N N N 10.703 12.425 5.912 -0.031 8.424 0.925 CAX DWK 32 DWK CAV C22 C 0 1 N N N 9.237 12.935 5.954 -0.860 7.866 -0.233 CAV DWK 33 DWK OBD O9 O 0 1 N N N 8.627 12.763 7.253 -1.717 6.829 0.251 OBD DWK 34 DWK CAT C23 C 0 1 N N N 9.140 13.667 8.221 -2.539 6.238 -0.757 CAT DWK 35 DWK CAP C24 C 0 1 N N N 8.373 13.330 9.478 -3.409 5.147 -0.129 CAP DWK 36 DWK CAR C25 C 0 1 N N N 9.192 13.938 10.642 -4.290 4.513 -1.207 CAR DWK 37 DWK NBA N3 N 0 1 N N N 8.282 14.277 11.746 -5.123 3.468 -0.606 NBA DWK 38 DWK H1 H1 H 0 1 N N N 4.310 6.935 6.314 11.178 -3.976 2.753 H1 DWK 39 DWK H2 H2 H 0 1 N N N 6.974 7.354 4.231 8.712 -4.420 0.832 H2 DWK 40 DWK H3 H3 H 0 1 N N N 4.492 9.796 7.515 12.651 -7.490 1.042 H3 DWK 41 DWK H4 H4 H 0 1 N N N 4.070 12.208 7.844 14.818 -7.569 -0.122 H4 DWK 42 DWK H5 H5 H 0 1 N N N 4.631 13.823 6.067 15.586 -5.633 -1.434 H5 DWK 43 DWK H6 H6 H 0 1 N N N 5.591 13.039 3.926 14.187 -3.613 -1.585 H6 DWK 44 DWK H7 H7 H 0 1 N N N 7.564 11.948 3.243 13.309 -1.883 -0.791 H7 DWK 45 DWK H8 H8 H 0 1 N N N 6.567 11.704 1.768 12.515 -2.541 -2.242 H8 DWK 46 DWK H9 H9 H 0 1 N N N 7.467 8.751 3.212 12.502 0.178 -2.293 H9 DWK 47 DWK H10 H10 H 0 1 N N N 10.061 8.155 4.052 9.955 0.723 0.067 H10 DWK 48 DWK H11 H11 H 0 1 N N N 8.276 7.844 0.165 11.216 1.675 -3.905 H11 DWK 49 DWK H12 H12 H 0 1 N N N 10.002 6.188 -0.485 9.537 3.468 -4.017 H12 DWK 50 DWK H13 H13 H 0 1 N N N 11.736 5.504 1.137 8.059 3.900 -2.101 H13 DWK 51 DWK H14 H14 H 0 1 N N N 13.424 6.964 2.312 7.017 4.115 -0.606 H14 DWK 52 DWK H15 H15 H 0 1 N N N 14.469 5.284 4.370 5.636 2.938 1.559 H15 DWK 53 DWK H16 H16 H 0 1 N N N 15.380 6.521 3.439 6.820 4.095 2.212 H16 DWK 54 DWK H17 H17 H 0 1 N N N 13.543 7.089 5.848 5.855 5.884 0.791 H17 DWK 55 DWK H18 H18 H 0 1 N N N 15.338 7.051 5.899 4.671 4.726 0.138 H18 DWK 56 DWK H19 H19 H 0 1 N N N 15.020 8.846 3.890 3.771 4.360 2.419 H19 DWK 57 DWK H20 H20 H 0 1 N N N 15.059 9.327 5.620 4.955 5.517 3.072 H20 DWK 58 DWK H21 H21 H 0 1 N N N 14.111 11.141 4.951 1.944 5.800 3.178 H21 DWK 59 DWK H22 H22 H 0 1 N N N 12.848 10.765 6.172 3.128 6.957 3.831 H22 DWK 60 DWK H23 H23 H 0 1 N N N 11.950 10.786 3.294 1.041 8.139 3.338 H23 DWK 61 DWK H24 H24 H 0 1 N N N 12.410 12.381 3.982 2.294 8.664 2.187 H24 DWK 62 DWK H25 H25 H 0 1 N N N 10.972 11.966 6.875 -0.695 8.748 1.726 H25 DWK 63 DWK H26 H26 H 0 1 N N N 11.388 13.259 5.700 0.557 9.273 0.575 H26 DWK 64 DWK H27 H27 H 0 1 N N N 9.229 14.005 5.699 -1.465 8.664 -0.665 H27 DWK 65 DWK H28 H28 H 0 1 N N N 8.648 12.377 5.211 -0.195 7.462 -0.995 H28 DWK 66 DWK H29 H29 H 0 1 N N N 10.219 13.512 8.368 -3.178 7.002 -1.199 H29 DWK 67 DWK H30 H30 H 0 1 N N N 8.957 14.709 7.919 -1.909 5.799 -1.530 H30 DWK 68 DWK H31 H31 H 0 1 N N N 7.367 13.773 9.444 -2.770 4.382 0.314 H31 DWK 69 DWK H32 H32 H 0 1 N N N 8.290 12.240 9.596 -4.040 5.585 0.644 H32 DWK 70 DWK H33 H33 H 0 1 N N N 9.936 13.207 10.990 -4.929 5.277 -1.650 H33 DWK 71 DWK H34 H34 H 0 1 N N N 9.705 14.847 10.296 -3.659 4.075 -1.981 H34 DWK 72 DWK H35 H35 H 0 1 N N N 8.154 14.847 12.557 -5.055 3.280 0.343 H35 DWK 73 DWK C1 C26 C 0 1 N N N ? ? ? -5.985 2.770 -1.372 C1 DWK 74 DWK C2 C27 C 0 1 Y N N ? ? ? -6.824 1.717 -0.766 C2 DWK 75 DWK O1 O10 O 0 1 N N N ? ? ? -6.070 3.006 -2.561 O1 DWK 76 DWK C3 C28 C 0 1 Y N N ? ? ? -7.717 0.992 -1.559 C3 DWK 77 DWK C4 C29 C 0 1 Y N N ? ? ? -8.498 0.010 -0.991 C4 DWK 78 DWK C5 C30 C 0 1 Y N N ? ? ? -8.399 -0.259 0.371 C5 DWK 79 DWK C6 C31 C 0 1 Y N N ? ? ? -7.510 0.461 1.163 C6 DWK 80 DWK C7 C32 C 0 1 Y N N ? ? ? -6.722 1.440 0.600 C7 DWK 81 DWK N1 N4 N 0 1 N N N ? ? ? -9.192 -1.253 0.943 N1 DWK 82 DWK C9 C33 C 0 1 N N N ? ? ? -10.434 -1.478 0.472 C9 DWK 83 DWK C10 C34 C 0 1 N N N ? ? ? -11.248 -2.626 1.012 C10 DWK 84 DWK O3 O11 O 0 1 N N N ? ? ? -12.519 -2.657 0.360 O3 DWK 85 DWK O2 O12 O 0 1 N N N ? ? ? -10.897 -0.757 -0.387 O2 DWK 86 DWK C8 C35 C 0 1 Y N N ? ? ? -13.381 -3.639 0.734 C8 DWK 87 DWK C11 C36 C 0 1 Y N N ? ? ? -13.011 -4.554 1.708 C11 DWK 88 DWK C12 C37 C 0 1 Y N N ? ? ? -13.888 -5.552 2.086 C12 DWK 89 DWK C13 C38 C 0 1 Y N N ? ? ? -15.135 -5.638 1.494 C13 DWK 90 DWK C14 C39 C 0 1 Y N N ? ? ? -15.506 -4.727 0.523 C14 DWK 91 DWK C15 C40 C 0 1 Y N N ? ? ? -14.635 -3.724 0.146 C15 DWK 92 DWK P1 P2 P 0 1 N N N ? ? ? -15.123 -2.529 -1.129 P1 DWK 93 DWK O6 O13 O 0 1 N N N ? ? ? -15.847 -1.270 -0.435 O6 DWK 94 DWK O4 O14 O 0 1 N N N ? ? ? -13.920 -2.067 -1.858 O4 DWK 95 DWK O5 O15 O 0 1 N N N ? ? ? -16.139 -3.231 -2.161 O5 DWK 96 DWK H36 H36 H 0 1 N N N ? ? ? -7.796 1.201 -2.615 H36 DWK 97 DWK H37 H37 H 0 1 N N N ? ? ? -9.189 -0.551 -1.602 H37 DWK 98 DWK H38 H38 H 0 1 N N N ? ? ? -7.436 0.250 2.219 H38 DWK 99 DWK H39 H39 H 0 1 N N N ? ? ? -6.032 1.999 1.215 H39 DWK 100 DWK H40 H40 H 0 1 N N N ? ? ? -8.849 -1.782 1.680 H40 DWK 101 DWK H41 H41 H 0 1 N N N ? ? ? -10.722 -3.563 0.827 H41 DWK 102 DWK H42 H42 H 0 1 N N N ? ? ? -11.393 -2.496 2.084 H42 DWK 103 DWK H43 H43 H 0 1 N N N ? ? ? -12.037 -4.488 2.170 H43 DWK 104 DWK H44 H44 H 0 1 N N N ? ? ? -13.600 -6.265 2.844 H44 DWK 105 DWK H45 H45 H 0 1 N N N ? ? ? -15.819 -6.419 1.791 H45 DWK 106 DWK H46 H46 H 0 1 N N N ? ? ? -16.480 -4.798 0.062 H46 DWK 107 DWK H47 H47 H 0 1 N N N ? ? ? -16.644 -1.499 0.061 H47 DWK 108 DWK H48 H48 H 0 1 N N N ? ? ? -16.443 -2.649 -2.872 H48 DWK 109 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DWK CAJ CAK DOUB Y N 1 DWK CAJ CAL SING Y N 2 DWK CAK CBJ SING Y N 3 DWK OAB CBH DOUB N N 4 DWK CAL CBK DOUB Y N 5 DWK CBH NBC SING N N 6 DWK CBH CAZ SING N N 7 DWK CBJ NBC SING N N 8 DWK CBJ CAO DOUB Y N 9 DWK CAZ OBG SING N N 10 DWK CBK CAO SING Y N 11 DWK CBK CBI SING N N 12 DWK NBB CBI SING N N 13 DWK NBB CAS SING N N 14 DWK OBG CBL SING N N 15 DWK CBI OAC DOUB N N 16 DWK CAS CAQ SING N N 17 DWK OAF PBN DOUB N N 18 DWK CAY OBF SING N N 19 DWK CAY CAW SING N N 20 DWK CBL CAM DOUB Y N 21 DWK CBL CBM SING Y N 22 DWK CAM CAH SING Y N 23 DWK OBE CAU SING N N 24 DWK OBE CAW SING N N 25 DWK CAU CAQ SING N N 26 DWK OBF CAX SING N N 27 DWK OAD PBN SING N N 28 DWK PBN CBM SING N N 29 DWK PBN OAE SING N N 30 DWK CBM CAN DOUB Y N 31 DWK CAH CAI DOUB Y N 32 DWK CAX CAV SING N N 33 DWK CAV OBD SING N N 34 DWK CAN CAI SING Y N 35 DWK OBD CAT SING N N 36 DWK CAT CAP SING N N 37 DWK CAP CAR SING N N 38 DWK CAR NBA SING N N 39 DWK OAE H1 SING N N 40 DWK OAD H2 SING N N 41 DWK CAN H3 SING N N 42 DWK CAI H4 SING N N 43 DWK CAH H5 SING N N 44 DWK CAM H6 SING N N 45 DWK CAZ H7 SING N N 46 DWK CAZ H8 SING N N 47 DWK NBC H9 SING N N 48 DWK CAO H10 SING N N 49 DWK CAK H11 SING N N 50 DWK CAJ H12 SING N N 51 DWK CAL H13 SING N N 52 DWK NBB H14 SING N N 53 DWK CAS H15 SING N N 54 DWK CAS H16 SING N N 55 DWK CAQ H17 SING N N 56 DWK CAQ H18 SING N N 57 DWK CAU H19 SING N N 58 DWK CAU H20 SING N N 59 DWK CAW H21 SING N N 60 DWK CAW H22 SING N N 61 DWK CAY H23 SING N N 62 DWK CAY H24 SING N N 63 DWK CAX H25 SING N N 64 DWK CAX H26 SING N N 65 DWK CAV H27 SING N N 66 DWK CAV H28 SING N N 67 DWK CAT H29 SING N N 68 DWK CAT H30 SING N N 69 DWK CAP H31 SING N N 70 DWK CAP H32 SING N N 71 DWK CAR H33 SING N N 72 DWK CAR H34 SING N N 73 DWK NBA H35 SING N N 74 DWK NBA C1 SING N N 75 DWK C1 C2 SING N N 76 DWK C1 O1 DOUB N N 77 DWK C2 C3 SING Y N 78 DWK C3 C4 DOUB Y N 79 DWK C4 C5 SING Y N 80 DWK C5 C6 DOUB Y N 81 DWK C6 C7 SING Y N 82 DWK C7 C2 DOUB Y N 83 DWK C5 N1 SING N N 84 DWK N1 C9 SING N N 85 DWK C9 C10 SING N N 86 DWK C10 O3 SING N N 87 DWK C9 O2 DOUB N N 88 DWK O3 C8 SING N N 89 DWK C8 C11 SING Y N 90 DWK C11 C12 DOUB Y N 91 DWK C12 C13 SING Y N 92 DWK C13 C14 DOUB Y N 93 DWK C14 C15 SING Y N 94 DWK C15 C8 DOUB Y N 95 DWK C15 P1 SING N N 96 DWK P1 O6 SING N N 97 DWK P1 O4 DOUB N N 98 DWK P1 O5 SING N N 99 DWK C3 H36 SING N N 100 DWK C4 H37 SING N N 101 DWK C6 H38 SING N N 102 DWK C7 H39 SING N N 103 DWK N1 H40 SING N N 104 DWK C10 H41 SING N N 105 DWK C10 H42 SING N N 106 DWK C11 H43 SING N N 107 DWK C12 H44 SING N N 108 DWK C13 H45 SING N N 109 DWK C14 H46 SING N N 110 DWK O6 H47 SING N N 111 DWK O5 H48 SING N N 112 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DWK InChI InChI 1.03 ;InChI=1S/C40H48N4O15P2/c45-37(27-58-33-10-1-3-12-35(33)60(49,50)51)43-31-16-14-29(15-17-31)39(47)41-18-6-20-55-22-24-57-25-23-56-21-7-19-42-40(48)30-8-5-9-32(26-30)44-38(46)28-59-34-11-2-4-13-36(34)61(52,53)54/h1-5,8-17,26H,6-7,18-25,27-28H2,(H,41,47)(H,42,48)(H,43,45)(H,44,46)(H2,49,50,51)(H2,52,53,54) ; DWK InChIKey InChI 1.03 UMUYNCNMFPOMAG-UHFFFAOYSA-N DWK SMILES_CANONICAL CACTVS 3.385 "O[P](O)(=O)c1ccccc1OCC(=O)Nc2ccc(cc2)C(=O)NCCCOCCOCCOCCCNC(=O)c3cccc(NC(=O)COc4ccccc4[P](O)(O)=O)c3" DWK SMILES CACTVS 3.385 "O[P](O)(=O)c1ccccc1OCC(=O)Nc2ccc(cc2)C(=O)NCCCOCCOCCOCCCNC(=O)c3cccc(NC(=O)COc4ccccc4[P](O)(O)=O)c3" DWK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(c(c1)OCC(=O)Nc2ccc(cc2)C(=O)NCCCOCCOCCOCCCNC(=O)c3cccc(c3)NC(=O)COc4ccccc4P(=O)(O)O)P(=O)(O)O" DWK SMILES "OpenEye OEToolkits" 2.0.6 "c1ccc(c(c1)OCC(=O)Nc2ccc(cc2)C(=O)NCCCOCCOCCOCCCNC(=O)c3cccc(c3)NC(=O)COc4ccccc4P(=O)(O)O)P(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DWK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[2-[2-oxidanylidene-2-[[3-[3-[2-[2-[3-[[4-[2-(2-phosphonophenoxy)ethanoylamino]phenyl]carbonylamino]propoxy]ethoxy]ethoxy]propylcarbamoyl]phenyl]amino]ethoxy]phenyl]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DWK "Create component" 2018-02-03 RCSB DWK "Initial release" 2018-07-04 RCSB #