data_DWZ
#
_chem_comp.id DWZ
_chem_comp.name "(2S,3R,4S)-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H27 N3 O5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "Meropenem, bound form"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-07-25
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 385.478
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ?
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3DWZ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DWZ CBE CBE C 0 1 N N N N N N -3.790 8.880 -2.047 7.351 0.613 -1.341 CBE DWZ 1
DWZ NBC NBC N 0 1 N N N N N N -2.856 8.636 -3.163 6.153 -0.132 -0.948 NBC DWZ 2
DWZ CBD CBD C 0 1 N N N N N N -1.855 9.504 -3.307 5.862 -1.430 -1.563 CBD DWZ 3
DWZ C C C 0 1 N N N N N N -3.004 7.580 -4.012 5.317 0.375 -0.020 C DWZ 4
DWZ O O O 0 1 N N N N N N -2.213 7.372 -4.938 5.558 1.450 0.489 O DWZ 5
DWZ CA CA C 0 1 N N S N N N -4.185 6.558 -3.829 4.084 -0.391 0.384 CA DWZ 6
DWZ CB CB C 0 1 N N N N N N -5.100 6.551 -5.084 2.965 -0.171 -0.655 CB DWZ 7
DWZ N N N 0 1 N N N N N N -5.077 6.856 -2.689 3.584 0.110 1.677 N DWZ 8
DWZ CD CD C 0 1 N N N N N N -6.386 6.351 -3.113 2.221 0.648 1.478 CD DWZ 9
DWZ CG CG C 0 1 N N S N N N -6.489 6.881 -4.541 1.688 -0.081 0.220 CG DWZ 10
DWZ SAK SAK S 0 1 N N N N N N -6.798 8.699 -4.636 0.403 0.899 -0.604 SAK DWZ 11
DWZ CAI CAI C 0 1 N N S N N N -8.268 9.077 -3.583 -1.015 0.736 0.516 CAI DWZ 12
DWZ CAH CAH C 0 1 N N R N N N -8.467 10.593 -3.658 -2.209 1.582 0.008 CAH DWZ 13
DWZ CAS CAS C 0 1 N N N N N N -9.056 11.128 -2.337 -3.033 2.129 1.174 CAS DWZ 14
DWZ CAL CAL C 0 1 N N N N N N -9.509 8.577 -4.303 -1.542 -0.682 0.503 CAL DWZ 15
DWZ CAM CAM C 0 1 N N N N N N -10.097 7.187 -4.267 -0.907 -1.817 1.214 CAM DWZ 16
DWZ OAT OAT O 0 1 N N N N N N -11.082 6.991 -4.984 0.105 -1.639 1.860 OAT DWZ 17
DWZ OAU OAU O 0 1 N N N N N N -9.563 6.333 -3.551 -1.452 -3.046 1.143 OAU DWZ 18
DWZ NAJ NAJ N 0 1 N N N N N N -10.050 9.500 -5.069 -2.602 -0.773 -0.196 NAJ DWZ 19
DWZ CAD CAD C 0 1 N N S N N N -9.375 10.792 -4.916 -3.002 0.516 -0.785 CAD DWZ 20
DWZ CAB CAB C 0 1 N N S N N N -10.535 11.782 -4.660 -4.507 0.735 -0.613 CAB DWZ 21
DWZ CAE CAE C 0 1 N N R N N N -10.320 13.165 -5.315 -5.270 -0.269 -1.479 CAE DWZ 22
DWZ CAF CAF C 0 1 N N N N N N -9.147 13.904 -4.662 -4.890 -0.069 -2.947 CAF DWZ 23
DWZ OAG OAG O 0 1 N N N N N N -10.155 13.088 -6.764 -4.933 -1.598 -1.076 OAG DWZ 24
DWZ CAA CAA C 0 1 N N N N N N -11.861 11.135 -5.127 -4.881 0.538 0.833 CAA DWZ 25
DWZ OAC OAC O 0 1 N N N N N N -12.630 10.585 -4.323 -5.503 1.393 1.418 OAC DWZ 26
DWZ HBE HBE H 0 1 N N N N N N -4.564 8.098 -2.038 7.113 1.268 -2.179 HBE DWZ 27
DWZ HBEA HBEA H 0 0 N N N N N N -3.238 8.860 -1.096 7.699 1.211 -0.499 HBEA DWZ 28
DWZ HBEB HBEB H 0 0 N N N N N N -4.264 9.864 -2.175 8.132 -0.087 -1.638 HBEB DWZ 29
DWZ HBD HBD H 0 1 N N N N N N -1.236 9.211 -4.168 6.326 -2.223 -0.976 HBD DWZ 30
DWZ HBDA HBDA H 0 0 N N N N N N -2.264 10.511 -3.475 4.783 -1.584 -1.594 HBDA DWZ 31
DWZ HBDB HBDB H 0 0 N N N N N N -1.238 9.506 -2.396 6.261 -1.449 -2.578 HBDB DWZ 32
DWZ HA HA H 0 1 N N N N N N -3.755 5.553 -3.705 4.317 -1.453 0.463 HA DWZ 33
DWZ HB HB H 0 1 N N N N N N -4.774 7.312 -5.808 3.124 0.758 -1.202 HB DWZ 34
DWZ HBA HBA H 0 1 N N N N N N -5.095 5.562 -5.565 2.904 -1.017 -1.340 HBA DWZ 35
DWZ HN HN H 0 1 N N N N N N -4.766 6.385 -1.863 3.586 -0.621 2.373 HN DWZ 36
DWZ HD HD H 0 1 N N N N N N -6.415 5.252 -3.093 1.595 0.424 2.342 HD DWZ 37
DWZ HDA HDA H 0 1 N N N N N N -7.192 6.751 -2.480 2.260 1.724 1.307 HDA DWZ 38
DWZ HG HG H 0 1 N N N N N N -7.282 6.373 -5.110 1.317 -1.075 0.473 HG DWZ 39
DWZ HAI HAI H 0 1 N N N N N N -8.125 8.678 -2.568 -0.739 1.033 1.528 HAI DWZ 40
DWZ HAH HAH H 0 1 N N N N N N -7.496 11.077 -3.841 -1.871 2.387 -0.644 HAH DWZ 41
DWZ HAS HAS H 0 1 N N N N N N -9.192 12.217 -2.410 -2.441 2.858 1.728 HAS DWZ 42
DWZ HASA HASA H 0 0 N N N N N N -10.028 10.649 -2.149 -3.933 2.609 0.789 HASA DWZ 43
DWZ HASB HASB H 0 0 N N N N N N -8.368 10.899 -1.510 -3.314 1.311 1.837 HASB DWZ 44
DWZ HOAU HOAU H 0 0 N N N N N N -10.028 5.509 -3.640 -1.002 -3.755 1.622 HOAU DWZ 45
DWZ HAD HAD H 0 1 N N N N N N -8.784 11.076 -5.799 -2.732 0.551 -1.840 HAD DWZ 46
DWZ HAB HAB H 0 1 N N N N N N -10.606 11.936 -3.573 -4.764 1.749 -0.920 HAB DWZ 47
DWZ HAE HAE H 0 1 N N N N N N -11.225 13.757 -5.111 -6.342 -0.113 -1.357 HAE DWZ 48
DWZ HAF HAF H 0 1 N N N N N N -9.015 14.883 -5.145 -5.147 0.945 -3.254 HAF DWZ 49
DWZ HAFA HAFA H 0 0 N N N N N N -9.355 14.049 -3.592 -3.818 -0.225 -3.070 HAFA DWZ 50
DWZ HAFB HAFB H 0 0 N N N N N N -8.228 13.310 -4.780 -5.434 -0.785 -3.564 HAFB DWZ 51
DWZ HOAG HOAG H 0 0 N N N N N N -10.027 13.961 -7.115 -5.381 -2.289 -1.584 HOAG DWZ 52
DWZ HAA HAA H 0 1 N Y N N N N -12.123 11.163 -6.174 -4.594 -0.367 1.347 HAA DWZ 53
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DWZ CBE HBE SING N N 1
DWZ CBE HBEA SING N N 2
DWZ CBE HBEB SING N N 3
DWZ NBC CBE SING N N 4
DWZ CBD NBC SING N N 5
DWZ CBD HBD SING N N 6
DWZ CBD HBDA SING N N 7
DWZ CBD HBDB SING N N 8
DWZ C NBC SING N N 9
DWZ C CA SING N N 10
DWZ O C DOUB N N 11
DWZ CA N SING N N 12
DWZ CA HA SING N N 13
DWZ CB CA SING N N 14
DWZ CB CG SING N N 15
DWZ CB HB SING N N 16
DWZ CB HBA SING N N 17
DWZ N HN SING N N 18
DWZ CD N SING N N 19
DWZ CD HD SING N N 20
DWZ CD HDA SING N N 21
DWZ CG CD SING N N 22
DWZ CG HG SING N N 23
DWZ SAK CG SING N N 24
DWZ SAK CAI SING N N 25
DWZ CAI HAI SING N N 26
DWZ CAH CAI SING N N 27
DWZ CAH CAS SING N N 28
DWZ CAH HAH SING N N 29
DWZ CAS HAS SING N N 30
DWZ CAS HASA SING N N 31
DWZ CAS HASB SING N N 32
DWZ CAL CAI SING N N 33
DWZ CAL CAM SING N N 34
DWZ CAM OAU SING N N 35
DWZ OAT CAM DOUB N N 36
DWZ OAU HOAU SING N N 37
DWZ NAJ CAL DOUB N N 38
DWZ NAJ CAD SING N N 39
DWZ CAD CAH SING N N 40
DWZ CAD CAB SING N N 41
DWZ CAD HAD SING N N 42
DWZ CAB HAB SING N N 43
DWZ CAE CAB SING N N 44
DWZ CAE CAF SING N N 45
DWZ CAE HAE SING N N 46
DWZ CAF HAF SING N N 47
DWZ CAF HAFA SING N N 48
DWZ CAF HAFB SING N N 49
DWZ OAG CAE SING N N 50
DWZ OAG HOAG SING N N 51
DWZ CAA CAB SING N N 52
DWZ CAA OAC DOUB N N 53
DWZ CAA HAA SING N N 54
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DWZ SMILES ACDLabs 12.01 "CN(C)C(=O)C1CC(SC2C(C)C(N=C2C(=O)O)C(C=O)C(C)O)CN1"
DWZ InChI InChI 1.03 "InChI=1S/C17H27N3O5S/c1-8-13(11(7-21)9(2)22)19-14(17(24)25)15(8)26-10-5-12(18-6-10)16(23)20(3)4/h7-13,15,18,22H,5-6H2,1-4H3,(H,24,25)/t8-,9-,10+,11-,12+,13-,15+/m1/s1"
DWZ InChIKey InChI 1.03 UUIYVKJXUXGPKB-VGWSNGFZSA-N
DWZ SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)[C@@H](C=O)[C@@H]1N=C([C@@H](S[C@@H]2CN[C@@H](C2)C(=O)N(C)C)[C@@H]1C)C(O)=O"
DWZ SMILES CACTVS 3.385 "C[CH](O)[CH](C=O)[CH]1N=C([CH](S[CH]2CN[CH](C2)C(=O)N(C)C)[CH]1C)C(O)=O"
DWZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@@H](C(=N[C@H]1[C@H](C=O)[C@@H](C)O)C(=O)O)S[C@H]2C[C@H](NC2)C(=O)N(C)C"
DWZ SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(=NC1C(C=O)C(C)O)C(=O)O)SC2CC(NC2)C(=O)N(C)C"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DWZ "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,3R,4S)-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid"
DWZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},3~{R},4~{S})-4-[(3~{S},5~{S})-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl-3-methyl-2-[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-butan-2-yl]-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid"
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id DWZ
_pdbx_chem_comp_synonyms.name "Meropenem, bound form"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DWZ "Create component" 2008-07-25 RCSB
DWZ "Modify descriptor" 2011-06-04 RCSB
DWZ "Modify synonyms" 2022-01-27 RCSB
DWZ "Modify PCM" 2024-09-27 PDBE
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 DWZ CYS None "Covalent chemical modification" "Amino-acid side chain" "Any position" CAA SG ? ?
2 DWZ SER None "Covalent chemical modification" "Amino-acid side chain" "Any position" CAA OG ? ?
#