data_DX5 # _chem_comp.id DX5 _chem_comp.name D-XYLITOL-5-PHOSPHATE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H13 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms D-HYLITOL-5-PHOSPHATE _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-01-24 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 232.126 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DX5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2FLI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DX5 C1 C1 C 0 1 N N N 58.653 99.470 57.022 4.224 0.844 0.103 C1 DX5 1 DX5 C2 C2 C 0 1 N N S 58.852 97.988 56.816 3.087 -0.111 0.472 C2 DX5 2 DX5 C3 C3 C 0 1 N N R 60.002 97.653 55.920 1.743 0.582 0.238 C3 DX5 3 DX5 C4 C4 C 0 1 N N R 59.748 97.961 54.475 0.606 -0.412 0.487 C4 DX5 4 DX5 C5 C5 C 0 1 N N N 60.999 98.249 53.687 -0.730 0.243 0.134 C5 DX5 5 DX5 O1 O1 O 0 1 N N N 57.549 99.770 57.884 5.477 0.240 0.431 O1 DX5 6 DX5 O2 O2 O 0 1 N N N 59.018 97.405 58.117 3.166 -1.283 -0.341 O2 DX5 7 DX5 O3 O3 O 0 1 N N N 60.392 96.263 56.051 1.678 1.052 -1.110 O3 DX5 8 DX5 O4 O4 O 0 1 N N N 59.092 96.883 53.805 0.799 -1.570 -0.327 O4 DX5 9 DX5 O5 O5 O 0 1 N N N 60.950 99.029 52.513 -1.799 -0.641 0.475 O5 DX5 10 DX5 P P P 0 1 N N N 62.040 99.709 51.769 -3.168 0.108 0.079 P DX5 11 DX5 O1P O1P O 0 1 N N N 63.217 98.674 51.641 -3.228 0.305 -1.518 O1P DX5 12 DX5 O2P O2P O 0 1 N N N 62.361 100.964 52.669 -4.424 -0.779 0.557 O2P DX5 13 DX5 O3P O3P O 0 1 N N N 61.330 100.059 50.359 -3.217 1.430 0.741 O3P DX5 14 DX5 H11 1H1 H 0 1 N N N 59.563 99.864 57.499 4.112 1.774 0.660 H11 DX5 15 DX5 H12 2H1 H 0 1 N N N 58.463 99.933 56.042 4.190 1.054 -0.966 H12 DX5 16 DX5 H2 H2 H 0 1 N N N 57.973 97.577 56.298 3.173 -0.391 1.522 H2 DX5 17 DX5 H3 H3 H 0 1 N N N 60.823 98.303 56.257 1.645 1.425 0.922 H3 DX5 18 DX5 H4 H4 H 0 1 N N N 59.115 98.860 54.508 0.602 -0.703 1.538 H4 DX5 19 DX5 H51 1H5 H 0 1 N N N 61.297 97.257 53.317 -0.837 1.174 0.690 H51 DX5 20 DX5 H52 2H5 H 0 1 N N N 61.671 98.783 54.375 -0.760 0.454 -0.935 H52 DX5 21 DX5 HO1 HO1 H 0 1 N N N 57.856 99.836 58.781 6.165 0.873 0.183 HO1 DX5 22 DX5 HO2 HO2 H 0 1 N N N 59.055 96.459 58.038 3.085 -0.992 -1.260 HO2 DX5 23 DX5 HO3 HO3 H 0 1 N N N 60.477 95.875 55.188 1.768 0.277 -1.681 HO3 DX5 24 DX5 HO4 HO4 H 0 1 N N N 58.946 97.116 52.896 0.797 -1.269 -1.246 HO4 DX5 25 DX5 H1P H1P H 0 1 N N N 63.358 98.465 50.725 -3.194 -0.578 -1.911 H1P DX5 26 DX5 H2P H2P H 0 1 N N N 62.426 100.694 53.578 -5.221 -0.296 0.301 H2P DX5 27 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DX5 C1 C2 SING N N 1 DX5 C1 O1 SING N N 2 DX5 C1 H11 SING N N 3 DX5 C1 H12 SING N N 4 DX5 C2 C3 SING N N 5 DX5 C2 O2 SING N N 6 DX5 C2 H2 SING N N 7 DX5 C3 C4 SING N N 8 DX5 C3 O3 SING N N 9 DX5 C3 H3 SING N N 10 DX5 C4 C5 SING N N 11 DX5 C4 O4 SING N N 12 DX5 C4 H4 SING N N 13 DX5 C5 O5 SING N N 14 DX5 C5 H51 SING N N 15 DX5 C5 H52 SING N N 16 DX5 O1 HO1 SING N N 17 DX5 O2 HO2 SING N N 18 DX5 O3 HO3 SING N N 19 DX5 O4 HO4 SING N N 20 DX5 O5 P SING N N 21 DX5 P O1P SING N N 22 DX5 P O2P SING N N 23 DX5 P O3P DOUB N N 24 DX5 O1P H1P SING N N 25 DX5 O2P H2P SING N N 26 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DX5 SMILES ACDLabs 10.04 "O=P(O)(O)OCC(O)C(O)C(O)CO" DX5 SMILES_CANONICAL CACTVS 3.341 "OC[C@H](O)[C@@H](O)[C@H](O)CO[P](O)(O)=O" DX5 SMILES CACTVS 3.341 "OC[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O" DX5 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]([C@H]([C@@H](COP(=O)(O)O)O)O)O)O" DX5 SMILES "OpenEye OEToolkits" 1.5.0 "C(C(C(C(COP(=O)(O)O)O)O)O)O" DX5 InChI InChI 1.03 "InChI=1S/C5H13O8P/c6-1-3(7)5(9)4(8)2-13-14(10,11)12/h3-9H,1-2H2,(H2,10,11,12)/t3-,4+,5+/m0/s1" DX5 InChIKey InChI 1.03 VJDOAZKNBQCAGE-VPENINKCSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DX5 "SYSTEMATIC NAME" ACDLabs 10.04 5-O-phosphono-D-xylitol DX5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4S)-2,3,4,5-tetrahydroxypentyl] dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DX5 "Create component" 2006-01-24 RCSB DX5 "Modify descriptor" 2011-06-04 RCSB DX5 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id DX5 _pdbx_chem_comp_synonyms.name D-HYLITOL-5-PHOSPHATE _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##