data_DX9
#
_chem_comp.id DX9
_chem_comp.name "(2S)-3-(7-carbamimidoylnaphthalen-2-yl)-2-[4-({(3R)-1-[(1Z)-ethanimidoyl]pyrrolidin-3-yl}oxy)phenyl]propanoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H28 N4 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms DX9056A
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 444.526
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DX9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1MTW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DX9 C12 C12 C 0 1 Y N N 29.129 11.425 15.963 3.533 0.899 0.039 C12 DX9 1
DX9 C13 C13 C 0 1 Y N N 28.811 10.645 17.078 2.585 1.515 0.797 C13 DX9 2
DX9 C11 C11 C 0 1 Y N N 28.335 11.237 18.270 1.916 0.827 1.807 C11 DX9 3
DX9 C10 C10 C 0 1 Y N N 28.174 12.638 18.336 2.190 -0.481 2.065 C10 DX9 4
DX9 C7 C7 C 0 1 Y N N 28.489 13.420 17.212 3.161 -1.153 1.304 C7 DX9 5
DX9 C6 C6 C 0 1 Y N N 28.342 14.807 17.232 3.467 -2.504 1.546 C6 DX9 6
DX9 C5 C5 C 0 1 Y N N 28.670 15.554 16.085 4.410 -3.131 0.798 C5 DX9 7
DX9 C4 C4 C 0 1 Y N N 29.159 14.925 14.911 5.092 -2.448 -0.224 C4 DX9 8
DX9 C9 C9 C 0 1 Y N N 29.293 13.543 14.890 4.814 -1.118 -0.487 C9 DX9 9
DX9 C8 C8 C 0 1 Y N N 28.974 12.803 16.021 3.843 -0.452 0.276 C8 DX9 10
DX9 C2 C2 C 0 1 N N N 29.501 15.731 13.691 6.116 -3.156 -1.024 C2 DX9 11
DX9 N2 N2 N 0 1 N N N 28.996 17.090 13.614 6.752 -2.528 -1.972 N2 DX9 12
DX9 N1 N1 N 0 1 N N N 30.177 15.178 12.765 6.398 -4.481 -0.766 N1 DX9 13
DX9 C14 C14 C 0 1 N N N 29.013 9.148 16.934 2.255 2.963 0.540 C14 DX9 14
DX9 C22 C22 C 0 1 N N N 28.014 6.879 17.452 1.027 4.511 -0.959 C22 DX9 15
DX9 O23 O23 O 0 1 N N N 27.619 6.227 18.415 1.517 5.378 -0.276 O23 DX9 16
DX9 O24 O24 O 0 1 N N N 28.621 6.262 16.588 0.280 4.837 -2.025 O24 DX9 17
DX9 C15 C15 C 0 1 N N S 27.754 8.336 17.338 1.256 3.061 -0.614 C15 DX9 18
DX9 N28 N28 N 0 1 N N N 21.936 7.101 11.980 -5.980 -1.843 -0.155 N28 DX9 19
DX9 C27 C27 C 0 1 N N N 21.928 6.989 13.431 -5.680 -0.460 0.256 C27 DX9 20
DX9 C26 C26 C 0 1 N N R 21.982 8.481 13.833 -4.150 -0.313 0.068 C26 DX9 21
DX9 C30 C30 C 0 1 N N N 21.026 9.099 12.797 -3.647 -1.716 0.500 C30 DX9 22
DX9 C29 C29 C 0 1 N N N 21.512 8.419 11.489 -4.763 -2.654 -0.006 C29 DX9 23
DX9 C31 C31 C 0 1 N N N 22.283 6.093 11.205 -7.194 -2.299 -0.598 C31 DX9 24
DX9 N32 N32 N 0 1 N N N 22.253 6.189 9.930 -8.198 -1.488 -0.681 N32 DX9 25
DX9 C33 C33 C 0 1 N N N 22.735 4.755 11.805 -7.359 -3.746 -0.987 C33 DX9 26
DX9 C21 C21 C 0 1 Y N N 25.033 8.272 17.089 -0.551 1.356 -0.915 C21 DX9 27
DX9 C20 C20 C 0 1 Y N N 24.006 8.444 16.260 -1.748 0.776 -0.540 C20 DX9 28
DX9 C17 C17 C 0 1 Y N N 26.697 8.847 15.093 -0.744 2.928 0.884 C17 DX9 29
DX9 C18 C18 C 0 1 Y N N 25.595 9.009 14.262 -1.941 2.351 1.263 C18 DX9 30
DX9 C19 C19 C 0 1 Y N N 24.292 8.825 14.784 -2.446 1.273 0.551 C19 DX9 31
DX9 O25 O25 O 0 1 N N N 23.316 9.037 13.805 -3.624 0.705 0.922 O25 DX9 32
DX9 C16 C16 C 0 1 Y N N 26.488 8.497 16.449 -0.050 2.431 -0.204 C16 DX9 33
DX9 H12 H12 H 0 1 N N N 29.494 10.958 15.060 4.041 1.443 -0.744 H12 DX9 34
DX9 H11 H11 H 0 1 N N N 28.096 10.622 19.125 1.168 1.340 2.394 H11 DX9 35
DX9 H10 H10 H 0 1 N N N 27.813 13.104 19.241 1.663 -1.001 2.852 H10 DX9 36
DX9 H6 H6 H 0 1 N N N 27.980 15.303 18.120 2.952 -3.042 2.328 H6 DX9 37
DX9 H5 H5 H 0 1 N N N 28.547 16.627 16.099 4.640 -4.169 0.990 H5 DX9 38
DX9 H9 H9 H 0 1 N N N 29.644 13.046 13.998 5.341 -0.597 -1.273 H9 DX9 39
DX9 H227 2H27 H 0 0 N N N 21.028 6.483 13.810 -6.210 0.249 -0.380 H227 DX9 40
DX9 HN21 1HN2 H 0 0 N N N 29.319 17.467 12.746 7.423 -2.992 -2.496 HN21 DX9 41
DX9 HN12 2HN1 H 0 0 N N N 30.373 14.246 13.070 5.925 -4.948 -0.060 HN12 DX9 42
DX9 HN11 1HN1 H 0 0 N N N 30.457 15.594 11.900 7.069 -4.945 -1.290 HN11 DX9 43
DX9 H141 1H14 H 0 0 N N N 29.247 8.928 15.882 1.818 3.401 1.437 H141 DX9 44
DX9 H142 2H14 H 0 0 N N N 29.832 8.854 17.607 3.166 3.502 0.279 H142 DX9 45
DX9 HO4 HO4 H 0 1 N N N 28.678 5.346 16.833 0.162 5.780 -2.206 HO4 DX9 46
DX9 H15 H15 H 0 1 N N N 27.531 8.794 18.313 1.653 2.539 -1.485 H15 DX9 47
DX9 H127 1H27 H 0 0 N N N 22.745 6.378 13.843 -5.952 -0.308 1.301 H127 DX9 48
DX9 H130 1H30 H 0 0 N N N 19.972 8.875 13.017 -2.698 -1.951 0.017 H130 DX9 49
DX9 H129 1H29 H 0 0 N N N 22.338 8.971 11.016 -4.935 -3.451 0.718 H129 DX9 50
DX9 H229 2H29 H 0 0 N N N 20.746 8.374 10.701 -4.481 -3.080 -0.969 H229 DX9 51
DX9 HN31 1HN3 H 0 0 N N N 22.544 5.342 9.485 -9.058 -1.811 -0.995 HN31 DX9 52
DX9 H230 2H30 H 0 0 N N N 21.052 10.198 12.765 -3.555 -1.776 1.584 H230 DX9 53
DX9 H331 1H33 H 0 0 N N N 22.843 4.011 11.002 -6.413 -4.269 -0.851 H331 DX9 54
DX9 H332 2H33 H 0 0 N N N 23.701 4.889 12.313 -8.123 -4.206 -0.360 H332 DX9 55
DX9 H333 3H33 H 0 0 N N N 21.984 4.406 12.530 -7.662 -3.808 -2.033 H333 DX9 56
DX9 H21 H21 H 0 1 N N N 24.896 7.999 18.125 -0.005 0.967 -1.761 H21 DX9 57
DX9 H20 H20 H 0 1 N N N 22.991 8.320 16.609 -2.139 -0.063 -1.096 H20 DX9 58
DX9 H17 H17 H 0 1 N N N 27.697 8.986 14.710 -0.350 3.767 1.438 H17 DX9 59
DX9 H18 H18 H 0 1 N N N 25.732 9.274 13.224 -2.483 2.740 2.113 H18 DX9 60
DX9 H26 H26 H 0 1 N N N 21.690 8.677 14.875 -3.902 -0.113 -0.975 H26 DX9 61
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DX9 C12 C13 DOUB Y N 1
DX9 C12 C8 SING Y N 2
DX9 C12 H12 SING N N 3
DX9 C13 C11 SING Y N 4
DX9 C13 C14 SING N N 5
DX9 C11 C10 DOUB Y N 6
DX9 C11 H11 SING N N 7
DX9 C10 C7 SING Y N 8
DX9 C10 H10 SING N N 9
DX9 C7 C6 DOUB Y N 10
DX9 C7 C8 SING Y N 11
DX9 C6 C5 SING Y N 12
DX9 C6 H6 SING N N 13
DX9 C5 C4 DOUB Y N 14
DX9 C5 H5 SING N N 15
DX9 C4 C9 SING Y N 16
DX9 C4 C2 SING N N 17
DX9 C9 C8 DOUB Y N 18
DX9 C9 H9 SING N N 19
DX9 C2 N2 DOUB N N 20
DX9 C2 N1 SING N N 21
DX9 C27 H227 SING N N 22
DX9 N2 HN21 SING N N 23
DX9 N1 HN12 SING N N 24
DX9 N1 HN11 SING N N 25
DX9 C14 C15 SING N N 26
DX9 C14 H141 SING N N 27
DX9 C14 H142 SING N N 28
DX9 C22 O23 DOUB N N 29
DX9 C22 O24 SING N N 30
DX9 C22 C15 SING N N 31
DX9 O24 HO4 SING N N 32
DX9 C15 C16 SING N N 33
DX9 C15 H15 SING N N 34
DX9 N28 C27 SING N N 35
DX9 N28 C29 SING N N 36
DX9 N28 C31 SING N N 37
DX9 C27 C26 SING N N 38
DX9 C27 H127 SING N N 39
DX9 C26 C30 SING N N 40
DX9 C26 O25 SING N N 41
DX9 C30 C29 SING N N 42
DX9 C30 H130 SING N N 43
DX9 C29 H129 SING N N 44
DX9 C31 N32 DOUB N N 45
DX9 C31 C33 SING N N 46
DX9 C29 H229 SING N N 47
DX9 N32 HN31 SING N N 48
DX9 C30 H230 SING N N 49
DX9 C33 H331 SING N N 50
DX9 C33 H332 SING N N 51
DX9 C33 H333 SING N N 52
DX9 C21 C20 DOUB Y N 53
DX9 C21 C16 SING Y N 54
DX9 C21 H21 SING N N 55
DX9 C20 C19 SING Y N 56
DX9 C20 H20 SING N N 57
DX9 C17 C18 SING Y N 58
DX9 C17 C16 DOUB Y N 59
DX9 C17 H17 SING N N 60
DX9 C18 C19 DOUB Y N 61
DX9 C18 H18 SING N N 62
DX9 C19 O25 SING N N 63
DX9 C26 H26 SING N N 64
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DX9 SMILES ACDLabs 10.04 "O=C(O)C(c2ccc(OC1CCN(C(=[N@H])C)C1)cc2)Cc4cc3cc(C(=[N@H])N)ccc3cc4"
DX9 SMILES_CANONICAL CACTVS 3.341 "CC(=N)N1CC[C@@H](C1)Oc2ccc(cc2)[C@H](Cc3ccc4ccc(cc4c3)C(N)=N)C(O)=O"
DX9 SMILES CACTVS 3.341 "CC(=N)N1CC[CH](C1)Oc2ccc(cc2)[CH](Cc3ccc4ccc(cc4c3)C(N)=N)C(O)=O"
DX9 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[H]/N=C(\C)/N1CC[C@@H](C1)Oc2ccc(cc2)[C@H](Cc3ccc4ccc(cc4c3)/C(=N/[H])/N)C(=O)O"
DX9 SMILES "OpenEye OEToolkits" 1.5.0 "[H]N=C(C)N1CCC(C1)Oc2ccc(cc2)C(Cc3ccc4ccc(cc4c3)C(=N[H])N)C(=O)O"
DX9 InChI InChI 1.03 "InChI=1S/C26H28N4O3/c1-16(27)30-11-10-23(15-30)33-22-8-6-19(7-9-22)24(26(31)32)13-17-2-3-18-4-5-20(25(28)29)14-21(18)12-17/h2-9,12,14,23-24,27H,10-11,13,15H2,1H3,(H3,28,29)(H,31,32)/b27-16+/t23-,24-/m0/s1"
DX9 InChIKey InChI 1.03 AGRCGQSFFMCBRE-DGUCVARSSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DX9 "SYSTEMATIC NAME" ACDLabs 10.04 "(2S)-3-(7-carbamimidoylnaphthalen-2-yl)-2-[4-({(3S)-1-[(1E)-ethanimidoyl]pyrrolidin-3-yl}oxy)phenyl]propanoic acid"
DX9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-3-(7-carbamimidoylnaphthalen-2-yl)-2-[4-[(3S)-1-ethanimidoylpyrrolidin-3-yl]oxyphenyl]propanoic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DX9 "Create component" 1999-07-08 RCSB
DX9 "Modify aromatic_flag" 2011-06-04 RCSB
DX9 "Modify descriptor" 2011-06-04 RCSB
DX9 "Modify synonyms" 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id DX9
_pdbx_chem_comp_synonyms.name DX9056A
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##