data_DXF # _chem_comp.id DXF _chem_comp.name "(2R)-5-[(carbamoyloxy)methyl]-2-[(1R)-1-{[(2Z)-2-(furan-2-yl)-2-(methoxyimino)acetyl]amino}-2-oxoethyl]-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H18 N4 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Cefuroxime, bound form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-06-11 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 426.401 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DXF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3NBL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DXF C C C 0 1 N N N N N N -11.521 -11.366 5.149 0.986 1.942 1.412 C DXF 1 DXF N N N 0 1 N N N N N N -10.010 -12.180 3.344 2.086 0.348 -0.050 N DXF 2 DXF O O O 0 1 N N N N N N -12.357 -10.624 4.272 1.796 1.594 2.237 O DXF 3 DXF CA CA C 0 1 N N R N N N -10.309 -11.889 4.716 1.000 1.327 0.036 CA DXF 4 DXF CB CB C 0 1 N N R N N N -9.304 -10.837 5.178 -0.337 0.630 -0.225 CB DXF 5 DXF CAA CAA C 0 1 N N N N N N -10.400 -16.828 1.299 7.309 1.853 -1.049 CAA DXF 6 DXF NAB NAB N 0 1 N N N N N N -7.781 -4.504 1.941 -6.810 -2.582 -1.338 NAB DXF 7 DXF OAD OAD O 0 1 N N N N N N -7.829 -5.316 -0.144 -7.173 -0.903 0.070 OAD DXF 8 DXF OAE OAE O 0 1 N N N N N N -11.094 -7.143 5.607 -4.365 2.304 -1.434 OAE DXF 9 DXF OAF OAF O 0 1 N N N N N N -9.357 -14.162 3.961 3.542 1.912 -0.654 OAF DXF 10 DXF OAG OAG O 0 1 N N N N N N -10.583 -6.413 3.702 -4.143 2.923 0.687 OAG DXF 11 DXF CAI CAI C 0 1 Y N N N N N -9.100 -11.430 -1.330 4.423 -3.838 0.199 CAI DXF 12 DXF CAJ CAJ C 0 1 Y N N N N N -8.467 -10.788 -0.348 3.115 -3.523 0.295 CAJ DXF 13 DXF CAK CAK C 0 1 Y N N N N N -9.564 -12.599 -0.876 5.118 -2.641 -0.053 CAK DXF 14 DXF CAL CAL C 0 1 N N N N N N -8.451 -7.160 2.529 -4.659 -0.238 0.428 CAL DXF 15 DXF CAM CAM C 0 1 N N N N N N -7.716 -9.710 3.051 -2.292 -1.223 0.589 CAM DXF 16 DXF NAN NAN N 0 1 N N N N N N -9.200 -14.922 0.860 5.678 0.191 -0.530 NAN DXF 17 DXF NAP NAP N 0 1 N N N N N N -9.913 -9.508 5.114 -1.437 1.599 -0.115 NAP DXF 18 DXF OAQ OAQ O 0 1 N N N N N N -9.238 -16.049 1.637 5.926 1.544 -0.867 OAQ DXF 19 DXF OAR OAR O 0 1 N N N N N N -7.574 -6.841 1.521 -5.056 -1.332 -0.441 OAR DXF 20 DXF OAS OAS O 0 1 Y N N N N N -8.544 -11.573 0.764 2.975 -2.201 0.115 OAS DXF 21 DXF SAT SAT S 0 1 N N N N N N -7.659 -10.951 4.426 -0.623 -0.656 1.034 SAT DXF 22 DXF CAU CAU C 0 1 N N N N N N -7.735 -5.525 1.071 -6.375 -1.581 -0.547 CAU DXF 23 DXF CAV CAV C 0 1 N N N N N N -10.485 -7.254 4.545 -3.796 2.189 -0.217 CAV DXF 24 DXF CAW CAW C 0 1 N N N N N N -9.594 -13.338 2.948 3.335 0.752 -0.358 CAW DXF 25 DXF CAX CAX C 0 1 N N N N N N -8.597 -8.482 3.346 -3.170 -0.031 0.327 CAX DXF 26 DXF CAY CAY C 0 1 N N N N N N -9.505 -13.754 1.428 4.454 -0.219 -0.337 CAY DXF 27 DXF CAZ CAZ C 0 1 N N N N N N -9.610 -8.480 4.317 -2.752 1.174 0.016 CAZ DXF 28 DXF CBA CBA C 0 1 Y N N N N N -9.261 -12.674 0.413 4.186 -1.648 -0.098 CBA DXF 29 DXF H1 H1 H 0 1 N N N N N N -11.833 -11.526 6.170 0.248 2.690 1.661 H1 DXF 30 DXF H3 H3 H 0 1 N N N N N N -10.128 -11.456 2.664 1.907 -0.591 0.115 H3 DXF 31 DXF H5 H5 H 0 1 N N N N N N -10.100 -12.797 5.301 1.154 2.108 -0.709 H5 DXF 32 DXF H6 H6 H 0 1 N N N N N N -9.114 -11.046 6.241 -0.334 0.183 -1.219 H6 DXF 33 DXF H7 H7 H 0 1 N N N N N N -10.430 -17.733 1.924 7.852 1.647 -0.126 H7 DXF 34 DXF H8 H8 H 0 1 N N N N N N -11.306 -16.230 1.476 7.715 1.241 -1.854 H8 DXF 35 DXF H9 H9 H 0 1 N N N N N N -10.352 -17.116 0.238 7.415 2.907 -1.305 H9 DXF 36 DXF H10 H10 H 0 1 N N N N N N -7.892 -3.568 1.608 -7.761 -2.761 -1.414 H10 DXF 37 DXF H11 H11 H 0 1 N N N N N N -7.704 -4.680 2.922 -6.174 -3.123 -1.831 H11 DXF 38 DXF H12 H12 H 0 1 N N N N N N -11.596 -6.337 5.602 -5.044 2.984 -1.538 H12 DXF 39 DXF H13 H13 H 0 1 N N N N N N -9.220 -11.062 -2.338 4.856 -4.822 0.301 H13 DXF 40 DXF H14 H14 H 0 1 N N N N N N -7.983 -9.825 -0.420 2.312 -4.221 0.484 H14 DXF 41 DXF H15 H15 H 0 1 N N N N N N -10.089 -13.345 -1.453 6.184 -2.530 -0.184 H15 DXF 42 DXF H16 H16 H 0 1 N N N N N N -8.274 -6.389 3.294 -5.174 0.673 0.124 H16 DXF 43 DXF H17 H17 H 0 1 N N N N N N -8.108 -10.208 2.152 -2.240 -1.840 -0.308 H17 DXF 44 DXF H18 H18 H 0 1 N N N N N N -6.691 -9.361 2.858 -2.708 -1.807 1.410 H18 DXF 45 DXF H2 H2 H 0 1 N N N N N N -9.444 -7.010 2.080 -4.924 -0.479 1.458 H2 DXF 46 DXF H4 H4 H 0 1 N N N N N N -9.810 -9.143 6.039 -1.241 2.549 -0.135 H4 DXF 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DXF CAI CAK SING Y N 1 DXF CAI CAJ DOUB Y N 2 DXF CAK CBA DOUB Y N 3 DXF CAJ OAS SING Y N 4 DXF OAD CAU DOUB N N 5 DXF CBA OAS SING Y N 6 DXF CBA CAY SING N N 7 DXF NAN CAY DOUB N Z 8 DXF NAN OAQ SING N N 9 DXF CAU OAR SING N N 10 DXF CAU NAB SING N N 11 DXF CAA OAQ SING N N 12 DXF CAY CAW SING N N 13 DXF OAR CAL SING N N 14 DXF CAL CAX SING N N 15 DXF CAW N SING N N 16 DXF CAW OAF DOUB N N 17 DXF CAM CAX SING N N 18 DXF CAM SAT SING N N 19 DXF N CA SING N N 20 DXF CAX CAZ DOUB N N 21 DXF OAG CAV DOUB N N 22 DXF O C DOUB N N 23 DXF CAZ CAV SING N N 24 DXF CAZ NAP SING N N 25 DXF SAT CB SING N N 26 DXF CAV OAE SING N N 27 DXF CA C SING N N 28 DXF CA CB SING N N 29 DXF NAP CB SING N N 30 DXF C H1 SING N N 31 DXF N H3 SING N N 32 DXF CA H5 SING N N 33 DXF CB H6 SING N N 34 DXF CAA H7 SING N N 35 DXF CAA H8 SING N N 36 DXF CAA H9 SING N N 37 DXF NAB H10 SING N N 38 DXF NAB H11 SING N N 39 DXF OAE H12 SING N N 40 DXF CAI H13 SING N N 41 DXF CAJ H14 SING N N 42 DXF CAK H15 SING N N 43 DXF CAL H16 SING N N 44 DXF CAM H17 SING N N 45 DXF CAM H18 SING N N 46 DXF CAL H2 SING N N 47 DXF NAP H4 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DXF SMILES ACDLabs 12.01 "O=CC(NC(=O)C(=N\OC)/c1occc1)C2SCC(=C(N2)C(=O)O)COC(=O)N" DXF InChI InChI 1.03 "InChI=1S/C16H18N4O8S/c1-26-20-12(10-3-2-4-27-10)13(22)18-9(5-21)14-19-11(15(23)24)8(7-29-14)6-28-16(17)25/h2-5,9,14,19H,6-7H2,1H3,(H2,17,25)(H,18,22)(H,23,24)/b20-12-/t9-,14-/m1/s1" DXF InChIKey InChI 1.03 RUUDYXYLGTZCPN-VRVPSKPHSA-N DXF SMILES_CANONICAL CACTVS 3.370 "CO\N=C(/C(=O)N[C@H](C=O)[C@@H]1NC(=C(COC(N)=O)CS1)C(O)=O)c2occc2" DXF SMILES CACTVS 3.370 "CON=C(C(=O)N[CH](C=O)[CH]1NC(=C(COC(N)=O)CS1)C(O)=O)c2occc2" DXF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CO/N=C(/c1ccco1)\C(=O)N[C@H](C=O)[C@@H]2NC(=C(CS2)COC(=O)N)C(=O)O" DXF SMILES "OpenEye OEToolkits" 1.7.6 "CON=C(c1ccco1)C(=O)NC(C=O)C2NC(=C(CS2)COC(=O)N)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DXF "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-5-[(carbamoyloxy)methyl]-2-[(1R)-1-{[(2Z)-2-(furan-2-yl)-2-(methoxyimino)acetyl]amino}-2-oxoethyl]-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid" DXF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-5-(aminocarbonyloxymethyl)-2-[(1R)-1-[[(2Z)-2-(furan-2-yl)-2-methoxyimino-ethanoyl]amino]-2-oxidanylidene-ethyl]-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DXF "Create component" 2010-06-11 RCSB DXF "Modify aromatic_flag" 2011-06-04 RCSB DXF "Modify descriptor" 2011-06-04 RCSB DXF "Other modification" 2012-05-09 RCSB DXF "Modify synonyms" 2021-03-13 RCSB DXF "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id DXF _pdbx_chem_comp_synonyms.name "Cefuroxime, bound form" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id DXF _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #