data_DY7
#
_chem_comp.id DY7
_chem_comp.name "2-amino-4-[(3,5-dibromophenyl)amino]-6-methylpyrimidin-1-ium"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H11 Br2 N4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2017-11-14
_chem_comp.pdbx_modified_date 2017-12-29
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 359.040
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DY7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6BM7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DY7 C15 C1 C 0 1 Y N N 28.539 10.138 27.019 -4.880 1.331 0.196 C15 DY7 1
DY7 C11 C2 C 0 1 Y N N 30.044 12.428 20.312 1.007 -1.163 0.256 C11 DY7 2
DY7 C10 C3 C 0 1 Y N N 30.319 11.222 19.681 2.201 -0.506 0.018 C10 DY7 3
DY7 C14 C4 C 0 1 Y N N 29.157 10.964 26.165 -3.682 1.855 0.639 C14 DY7 4
DY7 N17 N1 N 1 1 Y N N 28.343 8.785 26.656 -4.875 0.218 -0.524 N17 DY7 5
DY7 N01 N2 N 0 1 N N N 28.644 7.138 25.037 -3.775 -1.551 -1.580 N01 DY7 6
DY7 C02 C5 C 0 1 Y N N 28.839 8.402 25.355 -3.738 -0.392 -0.826 C02 DY7 7
DY7 N03 N3 N 0 1 Y N N 29.464 9.316 24.539 -2.568 0.081 -0.425 N03 DY7 8
DY7 C04 C6 C 0 1 Y N N 29.662 10.634 24.879 -2.500 1.190 0.304 C04 DY7 9
DY7 N05 N4 N 0 1 N N N 30.327 11.539 24.001 -1.273 1.683 0.723 N05 DY7 10
DY7 C06 C7 C 0 1 Y N N 30.334 11.448 22.533 -0.108 0.948 0.486 C06 DY7 11
DY7 C07 C8 C 0 1 Y N N 30.612 10.208 21.876 1.092 1.606 0.246 C07 DY7 12
DY7 C08 C9 C 0 1 Y N N 30.599 10.126 20.483 2.243 0.877 0.013 C08 DY7 13
DY7 BR9 BR1 BR 0 0 N N N 30.995 8.385 19.654 3.878 1.771 -0.312 BR9 DY7 14
DY7 BR2 BR2 BR 0 0 N N N 29.635 14.025 19.240 0.956 -3.053 0.269 BR2 DY7 15
DY7 C13 C10 C 0 1 Y N N 30.045 12.559 21.712 -0.147 -0.440 0.490 C13 DY7 16
DY7 C16 C11 C 0 1 N N N 27.970 10.402 28.389 -6.181 2.013 0.534 C16 DY7 17
DY7 H101 H1 H 0 0 N N N 30.315 11.141 18.604 3.102 -1.073 -0.165 H101 DY7 18
DY7 H141 H2 H 0 0 N N N 29.285 11.987 26.487 -3.659 2.758 1.231 H141 DY7 19
DY7 H011 H3 H 0 0 N N N 28.959 6.790 24.154 -4.626 -1.908 -1.881 H011 DY7 20
DY7 H012 H4 H 0 0 N N N 28.181 6.527 25.679 -2.950 -2.008 -1.809 H012 DY7 21
DY7 H051 H5 H 0 0 N N N 30.829 12.297 24.417 -1.224 2.537 1.179 H051 DY7 22
DY7 H071 H6 H 0 0 N N N 30.834 9.329 22.463 1.126 2.685 0.243 H071 DY7 23
DY7 H131 H7 H 0 0 N N N 29.823 13.516 22.162 -1.079 -0.954 0.675 H131 DY7 24
DY7 H162 H8 H 0 0 N N N 26.919 10.712 28.296 -6.423 2.738 -0.243 H162 DY7 25
DY7 H161 H9 H 0 0 N N N 28.030 9.485 28.994 -6.976 1.270 0.597 H161 DY7 26
DY7 H163 H10 H 0 0 N N N 28.546 11.202 28.877 -6.085 2.524 1.492 H163 DY7 27
DY7 H171 H11 H 0 0 N N N 27.889 8.133 27.263 -5.715 -0.155 -0.833 H171 DY7 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DY7 BR2 C11 SING N N 1
DY7 BR9 C08 SING N N 2
DY7 C10 C11 DOUB Y N 3
DY7 C10 C08 SING Y N 4
DY7 C11 C13 SING Y N 5
DY7 C08 C07 DOUB Y N 6
DY7 C13 C06 DOUB Y N 7
DY7 C07 C06 SING Y N 8
DY7 C06 N05 SING N N 9
DY7 N05 C04 SING N N 10
DY7 N03 C04 DOUB Y N 11
DY7 N03 C02 SING Y N 12
DY7 C04 C14 SING Y N 13
DY7 N01 C02 SING N N 14
DY7 C02 N17 DOUB Y N 15
DY7 C14 C15 DOUB Y N 16
DY7 N17 C15 SING Y N 17
DY7 C15 C16 SING N N 18
DY7 C10 H101 SING N N 19
DY7 C14 H141 SING N N 20
DY7 N01 H011 SING N N 21
DY7 N01 H012 SING N N 22
DY7 N05 H051 SING N N 23
DY7 C07 H071 SING N N 24
DY7 C13 H131 SING N N 25
DY7 C16 H162 SING N N 26
DY7 C16 H161 SING N N 27
DY7 C16 H163 SING N N 28
DY7 N17 H171 SING N N 29
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DY7 SMILES ACDLabs 12.01 "c1(C)cc(nc([nH+]1)N)Nc2cc(cc(c2)Br)Br"
DY7 InChI InChI 1.03 "InChI=1S/C11H10Br2N4/c1-6-2-10(17-11(14)15-6)16-9-4-7(12)3-8(13)5-9/h2-5H,1H3,(H3,14,15,16,17)/p+1"
DY7 InChIKey InChI 1.03 KGGBAZUXVZBIGO-UHFFFAOYSA-O
DY7 SMILES_CANONICAL CACTVS 3.385 "Cc1cc(Nc2cc(Br)cc(Br)c2)nc(N)[nH+]1"
DY7 SMILES CACTVS 3.385 "Cc1cc(Nc2cc(Br)cc(Br)c2)nc(N)[nH+]1"
DY7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1cc(nc([nH+]1)N)Nc2cc(cc(c2)Br)Br"
DY7 SMILES "OpenEye OEToolkits" 2.0.6 "Cc1cc(nc([nH+]1)N)Nc2cc(cc(c2)Br)Br"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DY7 "SYSTEMATIC NAME" ACDLabs 12.01 "2-amino-4-[(3,5-dibromophenyl)amino]-6-methylpyrimidin-1-ium"
DY7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}4-[3,5-bis(bromanyl)phenyl]-6-methyl-pyrimidin-1-ium-2,4-diamine"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DY7 "Create component" 2017-11-14 RCSB
DY7 "Initial release" 2018-01-03 RCSB
#