data_DYO # _chem_comp.id DYO _chem_comp.name "3-[4-(aminomethyl)phenyl]-6-[[1-[[2-chloranyl-4-(1,2,4-oxadiazol-3-yl)phenyl]methyl]-4-oxidanyl-piperidin-4-yl]methyl]-2-methyl-pyrazolo[4,3-d]pyrimidin-7-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H29 Cl N8 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-16 _chem_comp.pdbx_modified_date 2023-04-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 561.035 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DYO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7XHH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DYO C13 C1 C 0 1 Y N N 28.925 -0.896 -13.184 4.597 -1.073 -0.563 C13 DYO 1 DYO C15 C2 C 0 1 Y N N 30.585 -1.342 -15.212 6.667 -1.260 0.630 C15 DYO 2 DYO C17 C3 C 0 1 Y N N 28.829 0.652 -15.317 6.609 -0.222 -1.544 C17 DYO 3 DYO C22 C4 C 0 1 Y N N 36.394 1.257 -7.922 -5.681 0.809 -0.023 C22 DYO 4 DYO C24 C5 C 0 1 Y N N 37.173 2.279 -7.035 -6.560 -0.378 -0.039 C24 DYO 5 DYO C26 C6 C 0 1 Y N N 37.252 4.716 -5.988 -8.341 -1.662 0.935 C26 DYO 6 DYO C28 C7 C 0 1 Y N N 39.202 2.950 -5.515 -7.258 -2.437 -1.062 C28 DYO 7 DYO C01 C8 C 0 1 Y N N 35.032 1.041 -7.746 -4.311 0.829 -0.229 C01 DYO 8 DYO C02 C9 C 0 1 Y N N 34.643 0.098 -8.649 -3.944 2.248 -0.105 C02 DYO 9 DYO C03 C10 C 0 1 N N N 33.176 -0.350 -8.698 -2.524 2.590 -0.278 C03 DYO 10 DYO C07 C11 C 0 1 N N N 32.651 1.223 -6.850 -2.099 0.287 -0.633 C07 DYO 11 DYO C08 C12 C 0 1 N N N 30.758 -0.157 -7.923 -0.243 1.868 -0.716 C08 DYO 12 DYO C09 C13 C 0 1 N N N 29.940 0.950 -8.802 0.468 1.791 0.636 C09 DYO 13 DYO C12 C14 C 0 1 N N N 28.391 -1.232 -11.769 3.112 -1.317 -0.641 C12 DYO 14 DYO C14 C15 C 0 1 Y N N 30.050 -1.701 -13.820 5.306 -1.482 0.554 C14 DYO 15 DYO C16 C16 C 0 1 Y N N 29.960 -0.153 -15.948 7.326 -0.625 -0.420 C16 DYO 16 DYO C18 C17 C 0 1 Y N N 28.311 0.286 -13.931 5.249 -0.447 -1.610 C18 DYO 17 DYO C23 C18 C 0 1 N N N 38.188 0.335 -9.453 -7.437 2.525 0.453 C23 DYO 18 DYO C25 C19 C 0 1 Y N N 36.555 3.661 -6.859 -7.524 -0.551 0.956 C25 DYO 19 DYO C27 C20 C 0 1 Y N N 38.586 4.339 -5.336 -8.207 -2.604 -0.069 C27 DYO 20 DYO C29 C21 C 0 1 Y N N 38.498 1.896 -6.373 -6.434 -1.330 -1.053 C29 DYO 21 DYO C30 C22 C 0 1 N N N 39.313 5.347 -4.437 -9.100 -3.818 -0.082 C30 DYO 22 DYO C32 C23 C 0 1 N N N 30.688 0.812 -10.055 0.313 0.383 1.218 C32 DYO 23 DYO C33 C24 C 0 1 N N N 30.183 -0.342 -10.914 0.984 -0.626 0.283 C33 DYO 24 DYO C34 C25 C 0 1 N N N 28.715 0.260 -8.532 1.957 2.097 0.449 C34 DYO 25 DYO C35 C26 C 0 1 N N N 28.134 -0.559 -9.706 2.580 1.038 -0.463 C35 DYO 26 DYO C36 C27 C 0 1 Y N N 30.437 0.264 -17.347 8.789 -0.385 -0.345 C36 DYO 27 DYO C38 C28 C 0 1 Y N N 31.581 0.455 -19.167 10.801 -0.324 0.321 C38 DYO 28 DYO N04 N1 N 0 1 N N N 34.044 1.646 -6.795 -3.337 -0.075 -0.491 N04 DYO 29 DYO N05 N2 N 0 1 N N N 32.206 0.222 -7.823 -1.668 1.575 -0.536 N05 DYO 30 DYO N10 N3 N 0 1 N N N 28.745 -0.335 -11.019 2.406 -0.291 0.138 N10 DYO 31 DYO N20 N4 N 0 1 Y N N 35.723 -0.282 -9.370 -5.053 2.900 0.146 N20 DYO 32 DYO N21 N5 N 0 1 Y N N 36.832 0.443 -8.912 -6.059 2.101 0.192 N21 DYO 33 DYO N31 N6 N 0 1 N N N 38.832 5.060 -3.085 -10.314 -3.525 -0.855 N31 DYO 34 DYO N37 N7 N 0 1 Y N N 31.549 -0.156 -17.978 9.606 -0.721 0.679 N37 DYO 35 DYO N40 N8 N 0 1 Y N N 29.801 1.125 -18.124 9.530 0.186 -1.258 N40 DYO 36 DYO O06 O1 O 0 1 N N N 32.876 -1.158 -9.494 -2.135 3.740 -0.192 O06 DYO 37 DYO O11 O2 O 0 1 N N N 30.348 2.056 -7.927 -0.107 2.744 1.533 O11 DYO 38 DYO O39 O3 O 0 1 Y N N 30.510 1.244 -19.266 10.685 0.230 -0.890 O39 DYO 39 DYO CL1 CL1 CL 0 0 N N N 30.746 -3.069 -12.935 4.482 -2.273 1.862 CL1 DYO 40 DYO H1 H1 H 0 1 N N N 31.383 -1.914 -15.662 7.219 -1.578 1.502 H1 DYO 41 DYO H2 H2 H 0 1 N N N 28.394 1.483 -15.853 7.116 0.267 -2.363 H2 DYO 42 DYO H3 H3 H 0 1 N N N 36.816 5.693 -5.840 -9.084 -1.799 1.707 H3 DYO 43 DYO H4 H4 H 0 1 N N N 40.139 2.712 -5.033 -7.159 -3.176 -1.843 H4 DYO 44 DYO H5 H5 H 0 1 N N N 31.936 1.653 -6.164 -1.367 -0.479 -0.841 H5 DYO 45 DYO H6 H6 H 0 1 N N N 30.326 -0.209 -6.913 -0.128 2.869 -1.131 H6 DYO 46 DYO H7 H7 H 0 1 N N N 30.673 -1.140 -8.409 0.194 1.139 -1.399 H7 DYO 47 DYO H8 H8 H 0 1 N N N 27.293 -1.294 -11.787 2.790 -1.269 -1.681 H8 DYO 48 DYO H9 H9 H 0 1 N N N 28.807 -2.192 -11.429 2.884 -2.302 -0.235 H9 DYO 49 DYO H10 H10 H 0 1 N N N 27.515 0.859 -13.480 4.692 -0.135 -2.481 H10 DYO 50 DYO H11 H11 H 0 1 N N N 38.200 -0.400 -10.271 -7.930 2.761 -0.490 H11 DYO 51 DYO H12 H12 H 0 1 N N N 38.509 1.315 -9.837 -7.976 1.720 0.953 H12 DYO 52 DYO H13 H13 H 0 1 N N N 38.875 0.010 -8.658 -7.431 3.408 1.091 H13 DYO 53 DYO H14 H14 H 0 1 N N N 35.623 3.899 -7.349 -7.629 0.184 1.741 H14 DYO 54 DYO H15 H15 H 0 1 N N N 38.923 0.912 -6.507 -5.694 -1.201 -1.828 H15 DYO 55 DYO H16 H16 H 0 1 N N N 40.402 5.206 -4.499 -8.570 -4.654 -0.540 H16 DYO 56 DYO H17 H17 H 0 1 N N N 39.060 6.377 -4.727 -9.373 -4.079 0.940 H17 DYO 57 DYO H18 H18 H 0 1 N N N 31.747 0.636 -9.816 0.786 0.341 2.199 H18 DYO 58 DYO H19 H19 H 0 1 N N N 30.592 1.746 -10.628 -0.746 0.143 1.314 H19 DYO 59 DYO H20 H20 H 0 1 N N N 30.503 -1.292 -10.460 0.888 -1.628 0.702 H20 DYO 60 DYO H21 H21 H 0 1 N N N 30.615 -0.253 -11.922 0.502 -0.593 -0.694 H21 DYO 61 DYO H22 H22 H 0 1 N N N 27.964 1.008 -8.237 2.072 3.081 -0.004 H22 DYO 62 DYO H23 H23 H 0 1 N N N 27.065 -0.315 -9.788 2.089 1.063 -1.436 H23 DYO 63 DYO H24 H24 H 0 1 N N N 32.345 0.331 -19.920 11.710 -0.426 0.895 H24 DYO 64 DYO H25 H25 H 0 1 N N N 39.267 5.685 -2.436 -10.084 -3.219 -1.788 H25 DYO 65 DYO H26 H26 H 0 1 N N N 37.840 5.182 -3.051 -10.929 -4.325 -0.878 H26 DYO 66 DYO H28 H28 H 0 1 N N N 29.806 2.059 -7.147 -1.050 2.610 1.697 H28 DYO 67 DYO H29 H29 H 0 1 N N N 28.894 -0.430 -7.694 2.455 2.082 1.418 H29 DYO 68 DYO H30 H30 H 0 1 N N N 28.249 -1.625 -9.460 3.643 1.245 -0.586 H30 DYO 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DYO O39 C38 SING Y N 1 DYO O39 N40 SING Y N 2 DYO C38 N37 DOUB Y N 3 DYO N40 C36 DOUB Y N 4 DYO N37 C36 SING Y N 5 DYO C36 C16 SING N N 6 DYO C16 C17 DOUB Y N 7 DYO C16 C15 SING Y N 8 DYO C17 C18 SING Y N 9 DYO C15 C14 DOUB Y N 10 DYO C18 C13 DOUB Y N 11 DYO C14 C13 SING Y N 12 DYO C14 CL1 SING N N 13 DYO C13 C12 SING N N 14 DYO C12 N10 SING N N 15 DYO N10 C33 SING N N 16 DYO N10 C35 SING N N 17 DYO C33 C32 SING N N 18 DYO C32 C09 SING N N 19 DYO C35 C34 SING N N 20 DYO O06 C03 DOUB N N 21 DYO C23 N21 SING N N 22 DYO N20 N21 SING Y N 23 DYO N20 C02 DOUB Y N 24 DYO N21 C22 SING Y N 25 DYO C09 C34 SING N N 26 DYO C09 O11 SING N N 27 DYO C09 C08 SING N N 28 DYO C03 C02 SING N N 29 DYO C03 N05 SING N N 30 DYO C02 C01 SING Y N 31 DYO C08 N05 SING N N 32 DYO C22 C01 DOUB Y N 33 DYO C22 C24 SING N N 34 DYO N05 C07 SING N N 35 DYO C01 N04 SING N N 36 DYO C24 C25 DOUB Y N 37 DYO C24 C29 SING Y N 38 DYO C25 C26 SING Y N 39 DYO C07 N04 DOUB N N 40 DYO C29 C28 DOUB Y N 41 DYO C26 C27 DOUB Y N 42 DYO C28 C27 SING Y N 43 DYO C27 C30 SING N N 44 DYO C30 N31 SING N N 45 DYO C15 H1 SING N N 46 DYO C17 H2 SING N N 47 DYO C26 H3 SING N N 48 DYO C28 H4 SING N N 49 DYO C07 H5 SING N N 50 DYO C08 H6 SING N N 51 DYO C08 H7 SING N N 52 DYO C12 H8 SING N N 53 DYO C12 H9 SING N N 54 DYO C18 H10 SING N N 55 DYO C23 H11 SING N N 56 DYO C23 H12 SING N N 57 DYO C23 H13 SING N N 58 DYO C25 H14 SING N N 59 DYO C29 H15 SING N N 60 DYO C30 H16 SING N N 61 DYO C30 H17 SING N N 62 DYO C32 H18 SING N N 63 DYO C32 H19 SING N N 64 DYO C33 H20 SING N N 65 DYO C33 H21 SING N N 66 DYO C34 H22 SING N N 67 DYO C35 H23 SING N N 68 DYO C38 H24 SING N N 69 DYO N31 H25 SING N N 70 DYO N31 H26 SING N N 71 DYO O11 H28 SING N N 72 DYO C34 H29 SING N N 73 DYO C35 H30 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DYO InChI InChI 1.03 "InChI=1S/C28H29ClN8O3/c1-35-25(19-4-2-18(13-30)3-5-19)23-24(33-35)27(38)37(16-31-23)15-28(39)8-10-36(11-9-28)14-21-7-6-20(12-22(21)29)26-32-17-40-34-26/h2-7,12,16-17,39H,8-11,13-15,30H2,1H3" DYO InChIKey InChI 1.03 SUBLUDSEMODLLX-UHFFFAOYSA-N DYO SMILES_CANONICAL CACTVS 3.385 "Cn1nc2C(=O)N(CC3(O)CCN(CC3)Cc4ccc(cc4Cl)c5nocn5)C=Nc2c1c6ccc(CN)cc6" DYO SMILES CACTVS 3.385 "Cn1nc2C(=O)N(CC3(O)CCN(CC3)Cc4ccc(cc4Cl)c5nocn5)C=Nc2c1c6ccc(CN)cc6" DYO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1c(c2c(n1)C(=O)N(C=N2)CC3(CCN(CC3)Cc4ccc(cc4Cl)c5ncon5)O)c6ccc(cc6)CN" DYO SMILES "OpenEye OEToolkits" 2.0.7 "Cn1c(c2c(n1)C(=O)N(C=N2)CC3(CCN(CC3)Cc4ccc(cc4Cl)c5ncon5)O)c6ccc(cc6)CN" # _pdbx_chem_comp_identifier.comp_id DYO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[4-(aminomethyl)phenyl]-6-[[1-[[2-chloranyl-4-(1,2,4-oxadiazol-3-yl)phenyl]methyl]-4-oxidanyl-piperidin-4-yl]methyl]-2-methyl-pyrazolo[4,3-d]pyrimidin-7-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DYO "Create component" 2022-04-16 PDBJ DYO "Initial release" 2023-04-19 RCSB #