data_E1O # _chem_comp.id E1O _chem_comp.name "(2R)-2-[(E)-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H15 N2 O7 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-10-02 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 350.285 _chem_comp.one_letter_code ? _chem_comp.three_letter_code E1O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6L0S _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal E1O C6 C1 C 0 1 Y N N N N N -0.554 -8.082 -2.832 1.816 2.208 0.034 C6 E1O 1 E1O C5 C2 C 0 1 Y N N N N N -0.530 -7.295 -1.674 1.120 1.018 -0.030 C5 E1O 2 E1O N1 N1 N 0 1 Y N N N N N 0.098 -7.702 -4.001 1.184 3.365 0.082 N1 E1O 3 E1O C2 C3 C 0 1 Y N N N N N 0.788 -6.549 -4.046 -0.131 3.446 0.071 C2 E1O 4 E1O C4 C4 C 0 1 Y N N N N N 0.184 -6.069 -1.698 -0.279 1.050 -0.049 C4 E1O 5 E1O SG S1 S 0 1 N N N N N N 2.949 -6.441 2.682 -3.016 -1.499 2.528 SG E1O 6 E1O CB C5 C 0 1 N N N N N N 3.283 -5.092 1.502 -4.039 -1.487 1.030 CB E1O 7 E1O CA C6 C 0 1 N N R N N N 2.115 -4.219 1.001 -3.139 -1.385 -0.202 CA E1O 8 E1O C C7 C 0 1 N N N N N N 2.777 -2.865 0.614 -3.989 -1.375 -1.446 C E1O 9 E1O O O1 O 0 1 N N N N N N 3.533 -2.333 1.465 -4.793 -2.415 -1.718 O E1O 10 E1O N N2 N 0 1 N N N N N N 1.572 -4.913 -0.187 -2.358 -0.147 -0.135 N E1O 11 E1O OXT O2 O 0 1 N N N N N N 2.627 -2.421 -0.553 -3.947 -0.431 -2.199 OXT E1O 12 E1O O3P O3 O 0 1 N N N N N N -1.533 -6.119 1.977 4.271 -2.003 -1.498 O3P E1O 13 E1O P P1 P 0 1 N N N N N N -2.664 -6.924 1.508 4.357 -1.236 -0.085 P E1O 14 E1O O1P O4 O 0 1 N N N N N N -3.966 -6.269 1.346 4.088 -2.193 1.012 O1P E1O 15 E1O O2P O5 O 0 1 N N N N N N -2.665 -8.364 1.855 5.830 -0.611 0.098 O2P E1O 16 E1O O4P O6 O 0 1 N N N N N N -2.257 -6.963 -0.064 3.264 -0.055 -0.047 O4P E1O 17 E1O C5A C8 C 0 1 N N N N N N -1.200 -7.802 -0.531 1.856 -0.296 -0.079 C5A E1O 18 E1O C2A C9 C 0 1 N N N N N N 1.432 -6.204 -5.252 -0.793 4.798 0.128 C2A E1O 19 E1O C3 C10 C 0 1 Y N N N N N 0.836 -5.738 -2.900 -0.913 2.301 0.008 C3 E1O 20 E1O O3 O7 O 0 1 N N N N N N 1.546 -4.572 -2.967 -2.267 2.391 -0.003 O3 E1O 21 E1O C4A C11 C 0 1 N N N N N N 0.308 -5.236 -0.563 -1.066 -0.197 -0.117 C4A E1O 22 E1O H1 H1 H 0 1 N N N N N N -1.097 -9.015 -2.817 2.896 2.191 0.050 H1 E1O 23 E1O H2 H2 H 0 1 N N N N N N 4.136 -6.938 2.868 -3.925 -1.592 3.515 H2 E1O 24 E1O H3 H3 H 0 1 N N N N N N 3.745 -5.549 0.615 -4.620 -2.408 0.980 H3 E1O 25 E1O H4 H4 H 0 1 N N N N N N 4.005 -4.416 1.984 -4.715 -0.633 1.059 H4 E1O 26 E1O H5 H5 H 0 1 N N N N N N 1.356 -4.079 1.785 -2.463 -2.239 -0.231 H5 E1O 27 E1O H6 H6 H 0 1 N N N N N N 3.951 -1.570 1.084 -5.319 -2.363 -2.528 H6 E1O 28 E1O H7 H7 H 0 1 N N N N N N -1.819 -5.224 2.121 4.437 -1.436 -2.263 H7 E1O 29 E1O H8 H8 H 0 1 N N N N N N -3.561 -8.672 1.926 6.540 -1.268 0.085 H8 E1O 30 E1O H9 H9 H 0 1 N N N N N N -1.624 -8.785 -0.785 1.572 -0.903 0.781 H9 E1O 31 E1O H10 H10 H 0 1 N N N N N N -0.465 -7.918 0.279 1.598 -0.823 -0.997 H10 E1O 32 E1O H11 H11 H 0 1 N N N N N N 1.250 -6.987 -6.003 -0.942 5.173 -0.885 H11 E1O 33 E1O H12 H12 H 0 1 N N N N N N 1.035 -5.246 -5.618 -1.758 4.710 0.628 H12 E1O 34 E1O H13 H13 H 0 1 N N N N N N 2.514 -6.109 -5.076 -0.159 5.490 0.683 H13 E1O 35 E1O H14 H14 H 0 1 N N N N N N 1.498 -4.123 -2.131 -2.650 2.459 -0.889 H14 E1O 36 E1O H15 H15 H 0 1 N N N N N N -0.556 -4.876 -0.024 -0.562 -1.152 -0.153 H15 E1O 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal E1O C2A C2 SING N N 1 E1O C2 N1 DOUB Y N 2 E1O C2 C3 SING Y N 3 E1O N1 C6 SING Y N 4 E1O O3 C3 SING N N 5 E1O C3 C4 DOUB Y N 6 E1O C6 C5 DOUB Y N 7 E1O C4 C5 SING Y N 8 E1O C4 C4A SING N N 9 E1O C5 C5A SING N N 10 E1O C4A N DOUB N N 11 E1O OXT C DOUB N N 12 E1O C5A O4P SING N N 13 E1O N CA SING N N 14 E1O O4P P SING N N 15 E1O C CA SING N N 16 E1O C O SING N N 17 E1O CA CB SING N N 18 E1O O1P P DOUB N N 19 E1O CB SG SING N N 20 E1O P O2P SING N N 21 E1O P O3P SING N N 22 E1O C6 H1 SING N N 23 E1O SG H2 SING N N 24 E1O CB H3 SING N N 25 E1O CB H4 SING N N 26 E1O CA H5 SING N N 27 E1O O H6 SING N N 28 E1O O3P H7 SING N N 29 E1O O2P H8 SING N N 30 E1O C5A H9 SING N N 31 E1O C5A H10 SING N N 32 E1O C2A H11 SING N N 33 E1O C2A H12 SING N N 34 E1O C2A H13 SING N N 35 E1O O3 H14 SING N N 36 E1O C4A H15 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor E1O InChI InChI 1.03 "InChI=1S/C11H15N2O7PS/c1-6-10(14)8(3-13-9(5-22)11(15)16)7(2-12-6)4-20-21(17,18)19/h2-3,9,14,22H,4-5H2,1H3,(H,15,16)(H2,17,18,19)/b13-3+/t9-/m0/s1" E1O InChIKey InChI 1.03 NUTWYOJHALJXFM-BIMOUXMDSA-N E1O SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=N[C@@H](CS)C(O)=O)c1O" E1O SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=N[CH](CS)C(O)=O)c1O" E1O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)/C=N/[C@@H](CS)C(=O)O)O" E1O SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)C=NC(CS)C(=O)O)O" # _pdbx_chem_comp_identifier.comp_id E1O _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site E1O "Create component" 2019-10-02 PDBJ E1O "Initial release" 2020-09-23 RCSB E1O "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id E1O _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C4A _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #