data_E3V
#
_chem_comp.id E3V
_chem_comp.name "{cis-3-[(5R)-5-[(7-fluoro-1,1-dimethyl-1H-inden-5-yl)carbamoyl]-2-methoxy-7,8-dihydro-1,6-naphthyridine-6(5H)-carbonyl]cyclobutyl}acetic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H30 F N3 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-11-30
_chem_comp.pdbx_modified_date 2018-03-16
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 507.553
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code E3V
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6BR3
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
E3V C4 C1 C 0 1 Y N N 20.195 79.397 0.592 1.033 4.728 0.838 C4 E3V 1
E3V C5 C2 C 0 1 Y N N 21.276 78.889 1.270 0.694 3.441 1.210 C5 E3V 2
E3V C6 C3 C 0 1 Y N N 21.447 79.174 2.606 -0.353 2.803 0.549 C6 E3V 3
E3V C7 C4 C 0 1 N N R 22.604 78.623 3.372 -0.689 1.391 0.955 C7 E3V 4
E3V C10 C5 C 0 1 N N N 22.107 80.503 4.981 -2.162 1.331 -1.077 C10 E3V 5
E3V C21 C6 C 0 1 N N N 27.105 82.188 7.513 -5.654 -3.189 0.521 C21 E3V 6
E3V C22 C7 C 0 1 N N N 28.251 81.704 6.679 -6.094 -3.980 -0.683 C22 E3V 7
E3V C26 C8 C 0 1 N N N 22.171 77.263 3.855 0.405 0.463 0.495 C26 E3V 8
E3V C30 C9 C 0 1 Y N N 21.560 74.310 1.732 3.965 0.141 0.404 C30 E3V 9
E3V C40 C10 C 0 1 Y N N 20.976 74.567 4.024 2.337 -1.630 0.454 C40 E3V 10
E3V C31 C11 C 0 1 Y N N 20.795 73.154 1.697 4.958 -0.782 0.071 C31 E3V 11
E3V C37 C12 C 0 1 Y N N 20.115 72.694 2.810 4.620 -2.131 -0.064 C37 E3V 12
E3V C29 C13 C 0 1 Y N N 21.652 75.033 2.909 2.661 -0.287 0.596 C29 E3V 13
E3V C38 C14 C 0 1 Y N N 20.216 73.421 3.983 3.321 -2.550 0.129 C38 E3V 14
E3V C12 C15 C 0 1 Y N N 20.506 79.976 3.222 -1.028 3.467 -0.448 C12 E3V 15
E3V C3 C16 C 0 1 Y N N 19.313 80.179 1.305 0.317 5.339 -0.184 C3 E3V 16
E3V C14 C17 C 0 1 N N N 24.182 79.182 5.186 -2.904 0.336 1.047 C14 E3V 17
E3V C32 C18 C 0 1 N N N 20.583 72.266 0.527 6.401 -0.624 -0.189 C32 E3V 18
E3V C11 C19 C 0 1 N N N 20.643 80.323 4.660 -2.184 2.854 -1.196 C11 E3V 19
E3V C33 C20 C 0 1 N N N 19.799 71.108 1.102 6.963 -1.786 -0.473 C33 E3V 20
E3V C18 C21 C 0 1 N N N 25.276 81.484 5.841 -5.168 -0.799 1.324 C18 E3V 21
E3V C25 C22 C 0 1 N N N 25.665 80.004 7.249 -4.104 -1.370 -0.417 C25 E3V 22
E3V C16 C23 C 0 1 N N N 24.523 80.225 6.261 -4.199 -0.062 0.386 C16 E3V 23
E3V C19 C24 C 0 1 N N N 25.757 81.533 7.284 -5.497 -1.717 0.135 C19 E3V 24
E3V C34 C25 C 0 1 N N N 19.350 71.434 2.509 5.895 -2.854 -0.423 C34 E3V 25
E3V C35 C26 C 0 1 N N N 19.644 70.286 3.443 6.236 -3.893 0.647 C35 E3V 26
E3V C36 C27 C 0 1 N N N 17.859 71.697 2.537 5.755 -3.528 -1.789 C36 E3V 27
E3V C1 C28 C 0 1 N N N 17.066 80.065 1.141 -0.139 7.172 -1.624 C1 E3V 28
E3V N13 N1 N 0 1 Y N N 19.445 80.487 2.599 -0.671 4.702 -0.783 N13 E3V 29
E3V N9 N2 N 0 1 N N N 22.947 79.376 4.584 -1.960 0.990 0.341 N9 E3V 30
E3V N28 N3 N 0 1 N N N 22.433 76.226 2.960 1.667 0.637 0.936 N28 E3V 31
E3V O15 O1 O 0 1 N N N 24.932 78.264 4.885 -2.711 0.067 2.214 O15 E3V 32
E3V O27 O2 O 0 1 N N N 21.613 77.140 4.937 0.150 -0.442 -0.272 O27 E3V 33
E3V O24 O3 O 0 1 N N N 28.986 80.776 6.988 -6.296 -5.303 -0.580 O24 E3V 34
E3V O23 O4 O 0 1 N N N 28.360 82.445 5.543 -6.264 -3.424 -1.743 O23 E3V 35
E3V O2 O5 O 0 1 N N N 18.226 80.696 0.628 0.636 6.600 -0.568 O2 E3V 36
E3V F39 F1 F 0 1 N N N 19.581 73.036 5.095 3.007 -3.858 -0.004 F39 E3V 37
E3V H1 H1 H 0 1 N N N 20.043 79.192 -0.457 1.837 5.250 1.335 H1 E3V 38
E3V H2 H2 H 0 1 N N N 21.992 78.266 0.755 1.231 2.938 2.000 H2 E3V 39
E3V H3 H3 H 0 1 N N N 23.482 78.527 2.716 -0.778 1.337 2.040 H3 E3V 40
E3V H4 H4 H 0 1 N N N 22.208 80.643 6.067 -3.111 0.921 -1.423 H4 E3V 41
E3V H5 H5 H 0 1 N N N 22.467 81.403 4.460 -1.345 0.926 -1.674 H5 E3V 42
E3V H6 H6 H 0 1 N N N 27.374 82.032 8.568 -6.403 -3.280 1.308 H6 E3V 43
E3V H7 H7 H 0 1 N N N 26.987 83.265 7.320 -4.700 -3.574 0.881 H7 E3V 44
E3V H8 H8 H 0 1 N N N 22.081 74.644 0.847 4.214 1.186 0.516 H8 E3V 45
E3V H9 H9 H 0 1 N N N 21.047 75.118 4.950 1.319 -1.959 0.605 H9 E3V 46
E3V H10 H10 H 0 1 N N N 20.910 72.412 -0.492 6.929 0.317 -0.153 H10 E3V 47
E3V H11 H11 H 0 1 N N N 20.102 81.258 4.868 -2.118 3.132 -2.248 H11 E3V 48
E3V H12 H12 H 0 1 N N N 20.226 79.513 5.277 -3.119 3.233 -0.784 H12 E3V 49
E3V H13 H13 H 0 1 N N N 19.590 70.184 0.584 8.006 -1.945 -0.703 H13 E3V 50
E3V H14 H14 H 0 1 N N N 26.066 81.327 5.091 -4.673 -1.313 2.148 H14 E3V 51
E3V H15 H15 H 0 1 N N N 24.640 82.327 5.533 -6.010 -0.188 1.650 H15 E3V 52
E3V H16 H16 H 0 1 N N N 25.376 79.531 8.199 -4.087 -1.220 -1.496 H16 E3V 53
E3V H17 H17 H 0 1 N N N 26.547 79.492 6.837 -3.318 -2.041 -0.070 H17 E3V 54
E3V H18 H18 H 0 1 N N N 23.609 80.504 6.807 -4.661 0.757 -0.165 H18 E3V 55
E3V H19 H19 H 0 1 N N N 24.988 81.960 7.945 -6.315 -1.351 -0.486 H19 E3V 56
E3V H20 H20 H 0 1 N N N 19.310 70.544 4.459 6.324 -3.401 1.616 H20 E3V 57
E3V H21 H21 H 0 1 N N N 19.110 69.388 3.099 5.446 -4.642 0.691 H21 E3V 58
E3V H22 H22 H 0 1 N N N 20.726 70.089 3.452 7.181 -4.376 0.397 H22 E3V 59
E3V H23 H23 H 0 1 N N N 17.547 71.932 3.565 6.697 -4.008 -2.056 H23 E3V 60
E3V H24 H24 H 0 1 N N N 17.624 72.547 1.879 4.965 -4.277 -1.745 H24 E3V 61
E3V H25 H25 H 0 1 N N N 17.322 70.803 2.187 5.504 -2.778 -2.540 H25 E3V 62
E3V H26 H26 H 0 1 N N N 16.177 80.454 0.623 0.220 8.180 -1.833 H26 E3V 63
E3V H27 H27 H 0 1 N N N 17.138 78.979 0.981 -0.040 6.559 -2.520 H27 E3V 64
E3V H28 H28 H 0 1 N N N 16.982 80.272 2.218 -1.186 7.213 -1.326 H28 E3V 65
E3V H29 H29 H 0 1 N N N 23.201 76.323 2.327 1.886 1.404 1.488 H29 E3V 66
E3V H30 H30 H 0 1 N N N 29.643 80.654 6.313 -6.577 -5.768 -1.380 H30 E3V 67
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
E3V C32 C33 DOUB N N 1
E3V C32 C31 SING N N 2
E3V C4 C5 DOUB Y N 3
E3V C4 C3 SING Y N 4
E3V O2 C1 SING N N 5
E3V O2 C3 SING N N 6
E3V C33 C34 SING N N 7
E3V C5 C6 SING Y N 8
E3V C3 N13 DOUB Y N 9
E3V C31 C30 DOUB Y N 10
E3V C31 C37 SING Y N 11
E3V C30 C29 SING Y N 12
E3V C34 C36 SING N N 13
E3V C34 C37 SING N N 14
E3V C34 C35 SING N N 15
E3V N13 C12 SING Y N 16
E3V C6 C12 DOUB Y N 17
E3V C6 C7 SING N N 18
E3V C37 C38 DOUB Y N 19
E3V C29 N28 SING N N 20
E3V C29 C40 DOUB Y N 21
E3V N28 C26 SING N N 22
E3V C12 C11 SING N N 23
E3V C7 C26 SING N N 24
E3V C7 N9 SING N N 25
E3V C26 O27 DOUB N N 26
E3V C38 C40 SING Y N 27
E3V C38 F39 SING N N 28
E3V N9 C10 SING N N 29
E3V N9 C14 SING N N 30
E3V C11 C10 SING N N 31
E3V O15 C14 DOUB N N 32
E3V C14 C16 SING N N 33
E3V O23 C22 DOUB N N 34
E3V C18 C16 SING N N 35
E3V C18 C19 SING N N 36
E3V C16 C25 SING N N 37
E3V C22 O24 SING N N 38
E3V C22 C21 SING N N 39
E3V C25 C19 SING N N 40
E3V C19 C21 SING N N 41
E3V C4 H1 SING N N 42
E3V C5 H2 SING N N 43
E3V C7 H3 SING N N 44
E3V C10 H4 SING N N 45
E3V C10 H5 SING N N 46
E3V C21 H6 SING N N 47
E3V C21 H7 SING N N 48
E3V C30 H8 SING N N 49
E3V C40 H9 SING N N 50
E3V C32 H10 SING N N 51
E3V C11 H11 SING N N 52
E3V C11 H12 SING N N 53
E3V C33 H13 SING N N 54
E3V C18 H14 SING N N 55
E3V C18 H15 SING N N 56
E3V C25 H16 SING N N 57
E3V C25 H17 SING N N 58
E3V C16 H18 SING N N 59
E3V C19 H19 SING N N 60
E3V C35 H20 SING N N 61
E3V C35 H21 SING N N 62
E3V C35 H22 SING N N 63
E3V C36 H23 SING N N 64
E3V C36 H24 SING N N 65
E3V C36 H25 SING N N 66
E3V C1 H26 SING N N 67
E3V C1 H27 SING N N 68
E3V C1 H28 SING N N 69
E3V N28 H29 SING N N 70
E3V O24 H30 SING N N 71
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
E3V SMILES ACDLabs 12.01 "c5cc1c(CCN(C1C(=O)Nc2cc3c(c(c2)F)C(C=C3)(C)C)C(C4CC(CC(O)=O)C4)=O)nc5OC"
E3V InChI InChI 1.03
"InChI=1S/C28H30FN3O5/c1-28(2)8-6-16-13-18(14-20(29)24(16)28)30-26(35)25-19-4-5-22(37-3)31-21(19)7-9-32(25)27(36)17-10-15(11-17)12-23(33)34/h4-6,8,13-15,17,25H,7,9-12H2,1-3H3,(H,30,35)(H,33,34)/t15-,17+,25-/m1/s1"
E3V InChIKey InChI 1.03 CJKBQJKNOQWNCA-VFHHBZAHSA-N
E3V SMILES_CANONICAL CACTVS 3.385 "COc1ccc2[C@@H](N(CCc2n1)C(=O)[C@@H]3C[C@@H](C3)CC(O)=O)C(=O)Nc4cc(F)c5c(C=CC5(C)C)c4"
E3V SMILES CACTVS 3.385 "COc1ccc2[CH](N(CCc2n1)C(=O)[CH]3C[CH](C3)CC(O)=O)C(=O)Nc4cc(F)c5c(C=CC5(C)C)c4"
E3V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC1(C=Cc2c1c(cc(c2)NC(=O)[C@H]3c4ccc(nc4CCN3C(=O)C5CC(C5)CC(=O)O)OC)F)C"
E3V SMILES "OpenEye OEToolkits" 2.0.6 "CC1(C=Cc2c1c(cc(c2)NC(=O)C3c4ccc(nc4CCN3C(=O)C5CC(C5)CC(=O)O)OC)F)C"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
E3V "SYSTEMATIC NAME" ACDLabs 12.01 "{cis-3-[(5R)-5-[(7-fluoro-1,1-dimethyl-1H-inden-5-yl)carbamoyl]-2-methoxy-7,8-dihydro-1,6-naphthyridine-6(5H)-carbonyl]cyclobutyl}acetic acid"
E3V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-[3-[[(5~{R})-5-[(7-fluoranyl-1,1-dimethyl-inden-5-yl)carbamoyl]-2-methoxy-7,8-dihydro-5~{H}-1,6-naphthyridin-6-yl]carbonyl]cyclobutyl]ethanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
E3V "Create component" 2017-11-30 RCSB
E3V "Initial release" 2018-03-21 RCSB
#