data_E40 # _chem_comp.id E40 _chem_comp.name "(2R)-4-(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)-N-hydroxy-2-{[(4'-methoxybiphenyl-4-yl)sulfonyl](propan-2-yloxy)amino}butanamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H29 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms EN140 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-11-22 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 567.610 _chem_comp.one_letter_code ? _chem_comp.three_letter_code E40 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4WZV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal E40 O13 O1 O 0 1 N N N 5.734 7.815 25.971 2.361 3.361 -0.979 O13 E40 1 E40 S13 S1 S 0 1 N N N 5.176 8.677 24.926 1.960 2.730 0.230 S13 E40 2 E40 O14 O2 O 0 1 N N N 5.766 10.013 25.025 2.184 3.296 1.514 O14 E40 3 E40 C28 C1 C 0 1 Y N N 5.642 7.846 23.397 0.223 2.465 0.099 C28 E40 4 E40 C14 C2 C 0 1 Y N N 5.633 6.458 23.348 -0.542 2.330 1.244 C14 E40 5 E40 C17 C3 C 0 1 Y N N 6.028 5.801 22.201 -1.903 2.122 1.148 C17 E40 6 E40 C16 C4 C 0 1 Y N N 6.427 6.527 21.091 -2.507 2.049 -0.106 C16 E40 7 E40 C21 C5 C 0 1 Y N N 6.942 5.788 19.871 -3.969 1.821 -0.216 C21 E40 8 E40 C26 C6 C 0 1 Y N N 6.243 4.523 19.395 -4.742 1.684 0.936 C26 E40 9 E40 C25 C7 C 0 1 Y N N 6.714 3.861 18.368 -6.101 1.472 0.830 C25 E40 10 E40 C24 C8 C 0 1 Y N N 7.994 4.343 17.694 -6.698 1.395 -0.421 C24 E40 11 E40 O24 O3 O 0 1 N N N 8.500 3.629 16.611 -8.036 1.180 -0.521 O24 E40 12 E40 C61 C9 C 0 1 N N N 8.076 2.316 16.421 -8.766 1.050 0.700 C61 E40 13 E40 C23 C10 C 0 1 Y N N 8.622 5.417 18.121 -5.930 1.530 -1.569 C23 E40 14 E40 C30 C11 C 0 1 Y N N 8.068 6.184 19.316 -4.572 1.748 -1.470 C30 E40 15 E40 C15 C12 C 0 1 Y N N 6.451 7.906 21.143 -1.732 2.186 -1.256 C15 E40 16 E40 C29 C13 C 0 1 Y N N 6.063 8.565 22.290 -0.373 2.398 -1.148 C29 E40 17 E40 N12 N1 N 0 1 N N N 3.494 8.825 25.142 2.683 1.241 0.242 N12 E40 18 E40 O15 O4 O 0 1 N N N 2.837 7.618 24.904 3.178 0.704 1.456 O15 E40 19 E40 C67 C14 C 0 1 N N N 2.632 6.732 25.976 4.482 1.169 1.808 C67 E40 20 E40 C69 C15 C 0 1 N N N 1.934 5.496 25.436 4.412 1.926 3.136 C69 E40 21 E40 C68 C16 C 0 1 N N N 1.735 7.361 27.046 5.428 -0.025 1.951 C68 E40 22 E40 C31 C17 C 0 1 N N R 2.910 9.920 24.377 2.812 0.478 -1.002 C31 E40 23 E40 C11 C18 C 0 1 N N N 2.756 9.611 22.884 4.264 0.406 -1.399 C11 E40 24 E40 O2 O5 O 0 1 N N N 2.013 8.766 22.498 5.126 0.725 -0.608 O2 E40 25 E40 N2 N2 N 0 1 N N N 3.399 10.459 21.901 4.605 -0.013 -2.634 N2 E40 26 E40 O7 O6 O 0 1 N N N 3.257 10.105 20.563 5.969 -0.081 -3.007 O7 E40 27 E40 C32 C19 C 0 1 N N N 1.549 10.153 24.995 2.270 -0.937 -0.792 C32 E40 28 E40 C33 C20 C 0 1 N N N 0.990 11.453 24.456 0.777 -0.868 -0.465 C33 E40 29 E40 N48 N3 N 0 1 N N N 0.130 11.211 23.324 0.275 -2.215 -0.185 N48 E40 30 E40 C52 C21 C 0 1 N N N 0.113 11.978 22.103 0.170 -2.748 1.046 C52 E40 31 E40 O54 O7 O 0 1 N N N 0.872 12.849 21.800 0.472 -2.196 2.085 O54 E40 32 E40 C49 C22 C 0 1 N N N -0.985 10.285 23.239 -0.147 -3.081 -1.124 C49 E40 33 E40 O53 O8 O 0 1 N N N -1.323 9.484 24.047 -0.171 -2.873 -2.320 O53 E40 34 E40 C50 C23 C 0 1 Y N N -1.670 10.494 21.911 -0.575 -4.329 -0.456 C50 E40 35 E40 C51 C24 C 0 1 Y N N -1.048 11.469 21.264 -0.373 -4.117 0.923 C51 E40 36 E40 C55 C25 C 0 1 Y N N -2.882 9.791 21.313 -1.086 -5.537 -0.900 C55 E40 37 E40 C56 C26 C 0 1 Y N N -3.310 10.158 20.124 -1.393 -6.531 0.016 C56 E40 38 E40 C57 C27 C 0 1 Y N N -2.587 11.279 19.386 -1.193 -6.325 1.368 C57 E40 39 E40 C58 C28 C 0 1 Y N N -1.547 11.886 19.895 -0.686 -5.119 1.827 C58 E40 40 E40 H1 H1 H 0 1 N N N 5.316 5.891 24.211 -0.072 2.387 2.215 H1 E40 41 E40 H2 H2 H 0 1 N N N 6.026 4.721 22.169 -2.499 2.017 2.043 H2 E40 42 E40 H3 H3 H 0 1 N N N 5.358 4.171 19.904 -4.279 1.744 1.909 H3 E40 43 E40 H4 H4 H 0 1 N N N 6.202 2.983 18.002 -6.701 1.367 1.722 H4 E40 44 E40 H5 H5 H 0 1 N N N 8.566 1.897 15.529 -9.820 0.883 0.478 H5 E40 45 E40 H6 H6 H 0 1 N N N 8.342 1.714 17.302 -8.376 0.206 1.268 H6 E40 46 E40 H7 H7 H 0 1 N N N 6.985 2.300 16.282 -8.659 1.963 1.286 H7 E40 47 E40 H8 H8 H 0 1 N N N 9.523 5.753 17.629 -6.397 1.469 -2.541 H8 E40 48 E40 H9 H9 H 0 1 N N N 8.594 7.044 19.704 -3.974 1.854 -2.364 H9 E40 49 E40 H10 H10 H 0 1 N N N 6.775 8.471 20.282 -2.195 2.130 -2.230 H10 E40 50 E40 H11 H11 H 0 1 N N N 6.087 9.644 22.326 0.229 2.504 -2.039 H11 E40 51 E40 H12 H12 H 0 1 N N N 3.589 6.439 26.433 4.853 1.836 1.029 H12 E40 52 E40 H13 H13 H 0 1 N N N 1.761 4.784 26.256 5.410 1.995 3.568 H13 E40 53 E40 H14 H14 H 0 1 N N N 0.970 5.784 24.991 4.021 2.929 2.962 H14 E40 54 E40 H15 H15 H 0 1 N N N 2.565 5.024 24.669 3.754 1.394 3.823 H15 E40 55 E40 H16 H16 H 0 1 N N N 1.592 6.648 27.871 5.478 -0.564 1.005 H16 E40 56 E40 H17 H17 H 0 1 N N N 2.210 8.276 27.431 6.423 0.330 2.220 H17 E40 57 E40 H18 H18 H 0 1 N N N 0.759 7.612 26.605 5.057 -0.691 2.730 H18 E40 58 E40 H19 H19 H 0 1 N N N 3.521 10.827 24.493 2.244 0.971 -1.791 H19 E40 59 E40 H20 H20 H 0 1 N N N 3.923 11.266 22.173 3.916 -0.268 -3.267 H20 E40 60 E40 H21 H21 H 0 1 N N N 2.677 9.356 20.493 6.115 -0.393 -3.911 H21 E40 61 E40 H22 H22 H 0 1 N N N 0.876 9.323 24.733 2.416 -1.521 -1.700 H22 E40 62 E40 H23 H23 H 0 1 N N N 1.645 10.216 26.089 2.801 -1.410 0.034 H23 E40 63 E40 H24 H24 H 0 1 N N N 1.822 12.102 24.144 0.625 -0.234 0.409 H24 E40 64 E40 H25 H25 H 0 1 N N N 0.412 11.953 25.247 0.238 -0.449 -1.315 H25 E40 65 E40 H26 H26 H 0 1 N N N -3.382 9.003 21.857 -1.245 -5.704 -1.955 H26 E40 66 E40 H27 H27 H 0 1 N N N -4.164 9.671 19.676 -1.792 -7.474 -0.329 H27 E40 67 E40 H28 H28 H 0 1 N N N -2.945 11.581 18.413 -1.437 -7.107 2.072 H28 E40 68 E40 H29 H29 H 0 1 N N N -1.050 12.674 19.348 -0.531 -4.963 2.884 H29 E40 69 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal E40 C61 O24 SING N N 1 E40 O24 C24 SING N N 2 E40 C24 C23 DOUB Y N 3 E40 C24 C25 SING Y N 4 E40 C23 C30 SING Y N 5 E40 C25 C26 DOUB Y N 6 E40 C30 C21 DOUB Y N 7 E40 C57 C58 DOUB Y N 8 E40 C57 C56 SING Y N 9 E40 C26 C21 SING Y N 10 E40 C21 C16 SING N N 11 E40 C58 C51 SING Y N 12 E40 C56 C55 DOUB Y N 13 E40 O7 N2 SING N N 14 E40 C16 C15 DOUB Y N 15 E40 C16 C17 SING Y N 16 E40 C15 C29 SING Y N 17 E40 C51 C50 DOUB Y N 18 E40 C51 C52 SING N N 19 E40 C55 C50 SING Y N 20 E40 O54 C52 DOUB N N 21 E40 N2 C11 SING N N 22 E40 C50 C49 SING N N 23 E40 C52 N48 SING N N 24 E40 C17 C14 DOUB Y N 25 E40 C29 C28 DOUB Y N 26 E40 O2 C11 DOUB N N 27 E40 C11 C31 SING N N 28 E40 C49 N48 SING N N 29 E40 C49 O53 DOUB N N 30 E40 N48 C33 SING N N 31 E40 C14 C28 SING Y N 32 E40 C28 S13 SING N N 33 E40 C31 C32 SING N N 34 E40 C31 N12 SING N N 35 E40 C33 C32 SING N N 36 E40 O15 N12 SING N N 37 E40 O15 C67 SING N N 38 E40 S13 O14 DOUB N N 39 E40 S13 N12 SING N N 40 E40 S13 O13 DOUB N N 41 E40 C69 C67 SING N N 42 E40 C67 C68 SING N N 43 E40 C14 H1 SING N N 44 E40 C17 H2 SING N N 45 E40 C26 H3 SING N N 46 E40 C25 H4 SING N N 47 E40 C61 H5 SING N N 48 E40 C61 H6 SING N N 49 E40 C61 H7 SING N N 50 E40 C23 H8 SING N N 51 E40 C30 H9 SING N N 52 E40 C15 H10 SING N N 53 E40 C29 H11 SING N N 54 E40 C67 H12 SING N N 55 E40 C69 H13 SING N N 56 E40 C69 H14 SING N N 57 E40 C69 H15 SING N N 58 E40 C68 H16 SING N N 59 E40 C68 H17 SING N N 60 E40 C68 H18 SING N N 61 E40 C31 H19 SING N N 62 E40 N2 H20 SING N N 63 E40 O7 H21 SING N N 64 E40 C32 H22 SING N N 65 E40 C32 H23 SING N N 66 E40 C33 H24 SING N N 67 E40 C33 H25 SING N N 68 E40 C55 H26 SING N N 69 E40 C56 H27 SING N N 70 E40 C57 H28 SING N N 71 E40 C58 H29 SING N N 72 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor E40 SMILES ACDLabs 12.01 "O=S(=O)(c2ccc(c1ccc(OC)cc1)cc2)N(OC(C)C)C(C(=O)NO)CCN4C(=O)c3ccccc3C4=O" E40 InChI InChI 1.03 "InChI=1S/C28H29N3O8S/c1-18(2)39-31(40(36,37)22-14-10-20(11-15-22)19-8-12-21(38-3)13-9-19)25(26(32)29-35)16-17-30-27(33)23-6-4-5-7-24(23)28(30)34/h4-15,18,25,35H,16-17H2,1-3H3,(H,29,32)/t25-/m1/s1" E40 InChIKey InChI 1.03 WQCXDERWRJMJQA-RUZDIDTESA-N E40 SMILES_CANONICAL CACTVS 3.385 "COc1ccc(cc1)c2ccc(cc2)[S](=O)(=O)N(OC(C)C)[C@H](CCN3C(=O)c4ccccc4C3=O)C(=O)NO" E40 SMILES CACTVS 3.385 "COc1ccc(cc1)c2ccc(cc2)[S](=O)(=O)N(OC(C)C)[CH](CCN3C(=O)c4ccccc4C3=O)C(=O)NO" E40 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CC(C)ON([C@H](CCN1C(=O)c2ccccc2C1=O)C(=O)NO)S(=O)(=O)c3ccc(cc3)c4ccc(cc4)OC" E40 SMILES "OpenEye OEToolkits" 1.9.2 "CC(C)ON(C(CCN1C(=O)c2ccccc2C1=O)C(=O)NO)S(=O)(=O)c3ccc(cc3)c4ccc(cc4)OC" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier E40 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-4-(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)-N-hydroxy-2-{[(4'-methoxybiphenyl-4-yl)sulfonyl](propan-2-yloxy)amino}butanamide" E40 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2R)-4-[1,3-bis(oxidanylidene)isoindol-2-yl]-2-[[4-(4-methoxyphenyl)phenyl]sulfonyl-propan-2-yloxy-amino]-N-oxidanyl-butanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site E40 "Create component" 2014-11-22 EBI E40 "Initial release" 2015-08-26 RCSB E40 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id E40 _pdbx_chem_comp_synonyms.name EN140 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##