data_E47 # _chem_comp.id E47 _chem_comp.name "5-(4-morpholin-4-yl-7H-pyrrolo[2,3-d]pyrimidin-5-yl)-2-oxidanyl-benzaldehyde" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H16 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-13 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 324.334 _chem_comp.one_letter_code ? _chem_comp.three_letter_code E47 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8JMX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal E47 N1 N1 N 0 1 N N N N N N 3.450 30.598 4.203 1.341 1.248 -0.119 N1 E47 1 E47 N3 N2 N 0 1 Y N N N N N 1.225 32.557 7.362 3.858 -1.988 -0.118 N3 E47 2 E47 C4 C1 C 0 1 N N N N N N 3.169 30.758 1.934 0.234 2.986 -1.441 C4 E47 3 E47 C5 C2 C 0 1 Y N N N N N 2.787 31.218 5.324 2.179 0.147 -0.116 C5 E47 4 E47 C6 C3 C 0 1 Y N N N N N 1.173 32.805 6.015 4.289 -0.763 -0.326 C6 E47 5 E47 C7 C4 C 0 1 Y N N N N N 2.089 31.597 7.652 2.565 -2.227 0.102 C7 E47 6 E47 C8 C5 C 0 1 Y N N N N N 2.925 30.865 6.671 1.674 -1.140 0.109 C8 E47 7 E47 C10 C6 C 0 1 Y N N N N N 3.607 29.953 7.572 0.344 -1.703 0.374 C10 E47 8 E47 C13 C7 C 0 1 Y N N N N N 6.100 26.980 6.837 -3.243 -0.660 -0.142 C13 E47 9 E47 C15 C8 C 0 1 Y N N N N N 6.819 29.081 5.716 -2.196 0.875 1.404 C15 E47 10 E47 C17 C9 C 0 1 N N N N N N 6.284 25.500 7.168 -4.422 -1.092 -0.902 C17 E47 11 E47 O1 O1 O 0 1 N N N N N N 3.653 29.462 1.636 0.689 3.954 -0.492 O1 E47 12 E47 C1 C10 C 0 1 N N N N N N 4.157 28.781 2.776 0.823 3.441 0.836 C1 E47 13 E47 C2 C11 C 0 1 N N N N N N 3.428 29.176 4.055 1.809 2.270 0.828 C2 E47 14 E47 C3 C12 C 0 1 N N N N N N 3.934 31.359 3.104 1.215 1.810 -1.472 C3 E47 15 E47 N2 N3 N 0 1 Y N N N N N 1.892 32.197 5.013 3.485 0.285 -0.327 N2 E47 16 E47 N4 N4 N 0 1 Y N N N N N 2.470 31.004 8.900 1.833 -3.358 0.344 N4 E47 17 E47 C9 C13 C 0 1 Y N N N N N 3.372 30.069 8.854 0.511 -3.042 0.506 C9 E47 18 E47 C11 C14 C 0 1 Y N N N N N 4.714 29.017 7.069 -0.932 -0.953 0.479 C11 E47 19 E47 C12 C15 C 0 1 Y N N N N N 4.887 27.716 7.400 -2.042 -1.370 -0.244 C12 E47 20 E47 C14 C16 C 0 1 Y N N N N N 7.006 27.618 6.048 -3.313 0.472 0.687 C14 E47 21 E47 C16 C17 C 0 1 Y N N N N N 5.745 29.732 6.204 -1.015 0.170 1.305 C16 E47 22 E47 O2 O2 O 0 1 N N N N N N 8.132 26.947 5.515 -4.472 1.169 0.787 O2 E47 23 E47 H7 H1 H 0 1 N N N N N N 3.294 31.402 1.051 -0.754 2.628 -1.150 H7 E47 24 E47 H8 H2 H 0 1 N N N N N N 2.102 30.695 2.194 0.180 3.441 -2.429 H8 E47 25 E47 H9 H3 H 0 1 N N N N N N 0.482 33.573 5.702 5.343 -0.608 -0.501 H9 E47 26 E47 H13 H4 H 0 1 N N N N N N 7.537 29.597 5.096 -2.251 1.745 2.041 H13 E47 27 E47 H16 H5 H 0 1 N N N N N N 6.526 25.159 8.164 -5.348 -0.542 -0.821 H16 E47 28 E47 H2 H8 H 0 1 N N N N N N 4.039 27.698 2.622 1.195 4.226 1.494 H2 E47 29 E47 H1 H9 H 0 1 N N N N N N 5.224 29.022 2.889 -0.148 3.096 1.193 H1 E47 30 E47 H3 H10 H 0 1 N N N N N N 2.385 28.830 4.003 1.871 1.839 1.827 H3 E47 31 E47 H4 H11 H 0 1 N N N N N N 3.926 28.711 4.918 2.793 2.625 0.523 H4 E47 32 E47 H6 H12 H 0 1 N N N N N N 5.019 31.232 2.978 2.189 2.158 -1.814 H6 E47 33 E47 H5 H13 H 0 1 N N N N N N 3.702 32.427 3.226 0.842 1.043 -2.151 H5 E47 34 E47 H10 H14 H 0 1 N N N N N N 2.061 31.296 9.765 2.198 -4.255 0.394 H10 E47 35 E47 H11 H15 H 0 1 N N N N N N 3.818 29.523 9.672 -0.279 -3.750 0.706 H11 E47 36 E47 H12 H16 H 0 1 N N N N N N 4.184 27.211 8.046 -1.979 -2.238 -0.883 H12 E47 37 E47 H14 H17 H 0 1 N N N N N N 5.612 30.780 5.978 -0.149 0.490 1.865 H14 E47 38 E47 H15 H18 H 0 1 N N N N N N 8.126 26.041 5.801 -4.559 1.882 0.140 H15 E47 39 E47 O3 O3 O 0 1 N Y N N N N 6.121 24.625 6.109 -4.356 -2.067 -1.621 O3 E47 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal E47 O1 C4 SING N N 1 E47 O1 C1 SING N N 2 E47 C4 C3 SING N N 3 E47 C1 C2 SING N N 4 E47 C3 N1 SING N N 5 E47 C2 N1 SING N N 6 E47 N1 C5 SING N N 7 E47 N2 C5 DOUB Y N 8 E47 N2 C6 SING Y N 9 E47 C5 C8 SING Y N 10 E47 O2 C14 SING N N 11 E47 C15 C14 DOUB Y N 12 E47 C15 C16 SING Y N 13 E47 C6 N3 DOUB Y N 14 E47 C14 C13 SING Y N 15 E47 C16 C11 DOUB Y N 16 E47 C8 C10 SING Y N 17 E47 C8 C7 DOUB Y N 18 E47 C13 C17 SING N N 19 E47 C13 C12 DOUB Y N 20 E47 C11 C12 SING Y N 21 E47 C11 C10 SING N N 22 E47 N3 C7 SING Y N 23 E47 C10 C9 DOUB Y N 24 E47 C7 N4 SING Y N 25 E47 C9 N4 SING Y N 26 E47 C4 H7 SING N N 27 E47 C4 H8 SING N N 28 E47 C6 H9 SING N N 29 E47 C15 H13 SING N N 30 E47 C17 H16 SING N N 31 E47 C1 H2 SING N N 32 E47 C1 H1 SING N N 33 E47 C2 H3 SING N N 34 E47 C2 H4 SING N N 35 E47 C3 H6 SING N N 36 E47 C3 H5 SING N N 37 E47 N4 H10 SING N N 38 E47 C9 H11 SING N N 39 E47 C12 H12 SING N N 40 E47 C16 H14 SING N N 41 E47 O2 H15 SING N N 42 E47 C17 O3 DOUB N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor E47 InChI InChI 1.06 "InChI=1S/C17H16N4O3/c22-9-12-7-11(1-2-14(12)23)13-8-18-16-15(13)17(20-10-19-16)21-3-5-24-6-4-21/h1-2,7-10,23H,3-6H2,(H,18,19,20)" E47 InChIKey InChI 1.06 OPQSSAIBYNXUAR-UHFFFAOYSA-N E47 SMILES_CANONICAL CACTVS 3.385 "Oc1ccc(cc1C=O)c2c[nH]c3ncnc(N4CCOCC4)c23" E47 SMILES CACTVS 3.385 "Oc1ccc(cc1C=O)c2c[nH]c3ncnc(N4CCOCC4)c23" E47 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1c2c[nH]c3c2c(ncn3)N4CCOCC4)C=O)O" E47 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1c2c[nH]c3c2c(ncn3)N4CCOCC4)C=O)O" # _pdbx_chem_comp_identifier.comp_id E47 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-(4-morpholin-4-yl-7~{H}-pyrrolo[2,3-d]pyrimidin-5-yl)-2-oxidanyl-benzaldehyde" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site E47 "Create component" 2023-06-13 PDBC E47 "Initial release" 2023-10-18 RCSB E47 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id E47 _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C17 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? _pdbx_chem_comp_pcm.first_instance_model_db_code 8JMX #