data_E55
#
_chem_comp.id E55
_chem_comp.name "3-O-DECYL-2-DEOXY-6-O-{2-DEOXY-3-O-[(3R)-3-METHOXYDECYL]-6-O-METHYL-2-[(11Z)-OCTADEC-11-ENOYLAMINO]-4-O-PHOSPHONO-BETA-D-GLUCOPYRANOSYL}-2-[(3-OXOTETRADECANOYL)AMINO]-1-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C66 H126 N2 O19 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "E5564; ERITORAN"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-08-01
_chem_comp.pdbx_modified_date 2020-05-27
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 1313.656
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code E55
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2Z65
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
E55 CAB CAB C 0 1 N N N 39.409 17.650 39.811 18.840 -3.534 -3.117 CAB E55 1
E55 CAT CAT C 0 1 N N N 40.668 18.171 39.118 17.375 -3.380 -3.532 CAT E55 2
E55 CAZ CAZ C 0 1 N N N 40.282 18.895 37.844 16.649 -2.489 -2.522 CAZ E55 3
E55 CBF CBF C 0 1 N N N 41.422 19.811 37.494 15.185 -2.335 -2.937 CBF E55 4
E55 CBJ CBJ C 0 1 N N N 41.109 20.501 36.189 14.459 -1.444 -1.927 CBJ E55 5
E55 CBM CBM C 0 1 N N N 42.403 20.912 35.531 12.995 -1.290 -2.342 CBM E55 6
E55 CBP CBP C 0 1 N N N 42.087 21.983 34.515 12.269 -0.400 -1.332 CBP E55 7
E55 CBR CBR C 0 1 N N N 43.402 22.532 33.957 10.805 -0.245 -1.747 CBR E55 8
E55 CBU CBU C 0 1 N N N 43.115 23.346 32.721 10.079 0.645 -0.737 CBU E55 9
E55 CBY CBY C 0 1 N N N 44.399 23.841 32.095 8.615 0.799 -1.152 CBY E55 10
E55 CCD CCD C 0 1 N N N 44.015 24.794 30.959 7.889 1.690 -0.142 CCD E55 11
E55 CCV CCV C 0 1 N N N 45.242 25.469 30.409 6.446 1.842 -0.551 CCV E55 12
E55 OAG OAG O 0 1 N N N 46.079 25.903 31.188 6.041 1.294 -1.548 OAG E55 13
E55 CCH CCH C 0 1 N N N 45.441 25.627 28.906 5.510 2.677 0.284 CCH E55 14
E55 CCX CCX C 0 1 N N N 46.301 26.877 28.741 4.138 2.666 -0.338 CCX E55 15
E55 OAI OAI O 0 1 N N N 47.471 26.806 28.370 3.939 2.042 -1.358 OAI E55 16
E55 N2 N2 N 0 1 N N N 45.677 27.998 29.068 3.131 3.351 0.240 N2 E55 17
E55 C2 C2 C 0 1 N N R 46.308 29.302 29.025 1.796 3.340 -0.364 C2 E55 18
E55 C3 C3 C 0 1 N N R 45.577 30.192 30.027 1.032 4.597 0.061 C3 E55 19
E55 C4 C4 C 0 1 N N S 46.241 31.538 29.863 -0.387 4.537 -0.513 C4 E55 20
E55 O4 O4 O 0 1 N N N 45.695 32.416 30.855 -1.133 5.670 -0.062 O4 E55 21
E55 O3 O3 O 0 1 N N N 45.897 29.958 31.405 1.701 5.756 -0.440 O3 E55 22
E55 CCB CCB C 0 1 N N N 44.895 29.198 32.147 1.542 6.918 0.377 CCB E55 23
E55 CBX CBX C 0 1 N N N 45.543 28.854 33.498 2.296 8.091 -0.253 CBX E55 24
E55 CBT CBT C 0 1 N N N 44.767 27.841 34.354 2.126 9.335 0.622 CBT E55 25
E55 CBQ CBQ C 0 1 N N N 45.805 26.913 35.019 2.881 10.508 -0.008 CBQ E55 26
E55 CBN CBN C 0 1 N N N 45.267 26.202 36.263 2.710 11.752 0.867 CBN E55 27
E55 CBK CBK C 0 1 N N N 46.012 24.883 36.578 3.465 12.925 0.237 CBK E55 28
E55 CBG CBG C 0 1 N N N 45.612 24.322 37.969 3.294 14.169 1.112 CBG E55 29
E55 CBA CBA C 0 1 N N N 46.101 22.885 38.247 4.049 15.342 0.482 CBA E55 30
E55 CAU CAU C 0 1 N N N 45.061 22.197 39.145 3.878 16.586 1.357 CAU E55 31
E55 CAC CAC C 0 1 N N N 45.665 21.128 40.057 4.633 17.758 0.728 CAC E55 32
E55 C1 C1 C 0 1 N N R 46.245 29.854 27.600 1.030 2.102 0.109 C1 E55 33
E55 O1 O1 O 0 1 N N N 44.919 29.834 27.105 0.957 2.103 1.536 O1 E55 34
E55 PDJ PDJ P 0 1 N N N 44.704 30.055 25.531 0.891 0.754 2.412 PDJ E55 35
E55 OAM OAM O 0 1 N N N 43.276 29.378 25.289 0.950 1.127 3.977 OAM E55 36
E55 OAN OAN O 0 1 N N N 44.574 31.636 25.390 -0.482 -0.024 2.097 OAN E55 37
E55 OAJ OAJ O 0 1 N N N 45.761 29.499 24.654 2.040 -0.113 2.069 OAJ E55 38
E55 O5 O5 O 0 1 N N N 46.615 31.237 27.473 -0.291 2.124 -0.435 O5 E55 39
E55 C5 C5 C 0 1 N N R 46.044 32.129 28.439 -1.069 3.253 -0.034 C5 E55 40
E55 C6 C6 C 0 1 N N N 46.752 33.492 28.358 -2.466 3.156 -0.651 C6 E55 41
E55 O6 O6 O 0 1 N N N 47.947 33.302 29.179 -3.146 2.020 -0.114 O6 E55 42
E55 CDC CDC C 0 1 N N R 48.654 34.549 29.440 -4.467 1.837 -0.627 CDC E55 43
E55 OCR OCR O 0 1 N N N 49.330 35.091 28.244 -5.292 2.931 -0.222 OCR E55 44
E55 CDB CDB C 0 1 N N R 49.641 36.474 28.435 -6.634 2.860 -0.706 CDB E55 45
E55 CCI CCI C 0 1 N N N 50.069 36.972 27.082 -7.412 4.091 -0.235 CCI E55 46
E55 OCM OCM O 0 1 N N N 49.076 37.902 26.587 -6.856 5.263 -0.834 OCM E55 47
E55 CAE CAE C 0 1 N N N 49.109 37.926 25.138 -7.513 6.475 -0.458 CAE E55 48
E55 CDI CDI C 0 1 N N S 50.742 36.557 29.492 -7.305 1.595 -0.164 CDI E55 49
E55 OCU OCU O 0 1 N N N 50.986 37.935 29.798 -8.628 1.492 -0.693 OCU E55 50
E55 PDK PDK P 0 1 N N N 52.332 38.676 29.312 -9.943 1.461 0.235 PDK E55 51
E55 OAO OAO O 0 1 N N N 52.707 39.747 30.478 -11.257 1.471 -0.696 OAO E55 52
E55 OAP OAP O 0 1 N N N 53.423 37.482 29.427 -9.934 0.127 1.136 OAP E55 53
E55 OAK OAK O 0 1 N N N 52.228 39.347 27.987 -9.953 2.651 1.115 OAK E55 54
E55 CDH CDH C 0 1 N N R 50.389 35.775 30.790 -6.487 0.371 -0.589 CDH E55 55
E55 OCP OCP O 0 1 N N N 51.567 35.463 31.560 -7.064 -0.809 -0.026 OCP E55 56
E55 CCC CCC C 0 1 N N N 51.895 36.467 32.573 -8.052 -1.425 -0.855 CCC E55 57
E55 CCG CCG C 0 1 N N N 52.464 35.888 33.888 -8.599 -2.671 -0.156 CCG E55 58
E55 CCY CCY C 0 1 N N R 51.349 35.159 34.658 -9.656 -3.331 -1.044 CCY E55 59
E55 OCN OCN O 0 1 N N N 50.345 36.097 35.023 -10.776 -2.454 -1.182 OCN E55 60
E55 CAF CAF C 0 1 N N N 50.767 36.821 36.191 -11.349 -2.445 -2.491 CAF E55 61
E55 CCF CCF C 0 1 N N N 51.933 34.592 35.938 -10.113 -4.643 -0.403 CCF E55 62
E55 CCA CCA C 0 1 N N N 52.356 33.133 35.826 -11.101 -5.348 -1.335 CCA E55 63
E55 CBW CBW C 0 1 N N N 52.800 32.644 37.205 -11.519 -6.684 -0.717 CBW E55 64
E55 CBH CBH C 0 1 N N N 53.636 31.387 37.074 -12.507 -7.390 -1.649 CBH E55 65
E55 CBB CBB C 0 1 N N N 52.841 30.169 37.535 -12.925 -8.726 -1.031 CBB E55 66
E55 CAV CAV C 0 1 N N N 53.525 28.865 37.100 -13.913 -9.431 -1.963 CAV E55 67
E55 CAD CAD C 0 1 N N N 52.990 28.374 35.746 -14.331 -10.767 -1.346 CAD E55 68
E55 CDE CDE C 0 1 N N R 49.735 34.413 30.520 -5.050 0.530 -0.083 CDE E55 69
E55 NCK NCK N 0 1 N N N 49.159 33.896 31.768 -4.240 -0.599 -0.546 NCK E55 70
E55 CCW CCW C 0 1 N N N 49.093 32.598 32.047 -3.134 -0.960 0.135 CCW E55 71
E55 OAH OAH O 0 1 N N N 49.489 31.718 31.288 -2.810 -0.350 1.132 OAH E55 72
E55 CCE CCE C 0 1 N N N 48.462 32.248 33.389 -2.300 -2.121 -0.342 CCE E55 73
E55 CBZ CBZ C 0 1 N N N 49.426 31.424 34.217 -1.113 -2.318 0.602 CBZ E55 74
E55 CBV CBV C 0 1 N N N 48.880 31.195 35.623 -0.267 -3.497 0.118 CBV E55 75
E55 CBS CBS C 0 1 N N N 48.618 29.694 35.822 0.921 -3.694 1.062 CBS E55 76
E55 CBO CBO C 0 1 N N N 48.610 29.299 37.316 1.767 -4.873 0.578 CBO E55 77
E55 CBL CBL C 0 1 N N N 49.167 27.881 37.471 2.955 -5.071 1.522 CBL E55 78
E55 CBI CBI C 0 1 N N N 49.633 27.585 38.895 3.801 -6.250 1.038 CBI E55 79
E55 CBD CBD C 0 1 N N N 50.774 26.557 38.904 4.989 -6.447 1.982 CBD E55 80
E55 CAX CAX C 0 1 N N N 50.255 25.148 38.591 5.835 -7.626 1.497 CAX E55 81
E55 CAR CAR C 0 1 N N N 51.258 24.348 38.029 7.005 -7.820 2.428 CAR E55 82
E55 CAQ CAQ C 0 1 N N N 51.344 24.081 36.659 7.238 -8.998 2.951 CAQ E55 83
E55 CAW CAW C 0 1 N N N 50.426 24.609 35.755 6.441 -10.195 2.497 CAW E55 84
E55 CBC CBC C 0 1 N N N 50.614 24.033 34.342 7.396 -11.318 2.089 CBC E55 85
E55 CBE CBE C 0 1 N N N 49.755 24.785 33.305 6.587 -12.533 1.628 CBE E55 86
E55 CAY CAY C 0 1 N N N 50.075 26.290 33.309 7.542 -13.656 1.220 CAY E55 87
E55 CAS CAS C 0 1 N N N 49.200 27.018 32.308 6.734 -14.871 0.760 CAS E55 88
E55 CAA CAA C 0 1 N N N 49.719 28.432 32.109 7.688 -15.994 0.352 CAA E55 89
E55 HAA1 1HAA H 0 0 N N N 49.844 28.918 33.088 8.308 -16.272 1.205 HAA1 E55 90
E55 HAA2 2HAA H 0 0 N N N 50.688 28.397 31.590 7.112 -16.860 0.023 HAA2 E55 91
E55 HAA3 3HAA H 0 0 N N N 49.000 29.005 31.505 8.326 -15.652 -0.463 HAA3 E55 92
E55 HAS1 1HAS H 0 0 N N N 49.220 26.483 31.347 6.096 -15.213 1.575 HAS1 E55 93
E55 HAS2 2HAS H 0 0 N N N 48.168 27.058 32.687 6.114 -14.593 -0.093 HAS2 E55 94
E55 HAY1 1HAY H 0 0 N N N 49.889 26.696 34.314 8.179 -13.314 0.405 HAY1 E55 95
E55 HAY2 2HAY H 0 0 N N N 51.130 26.432 33.032 8.161 -13.934 2.073 HAY2 E55 96
E55 HBE1 1HBE H 0 0 N N N 49.965 24.378 32.305 5.950 -12.875 2.443 HBE1 E55 97
E55 HBE2 2HBE H 0 0 N N N 48.695 24.651 33.565 5.968 -12.255 0.775 HBE2 E55 98
E55 HBC1 1HBC H 0 0 N N N 51.673 24.126 34.059 8.033 -10.976 1.274 HBC1 E55 99
E55 HBC2 2HBC H 0 0 N N N 50.299 22.979 34.353 8.015 -11.596 2.942 HBC2 E55 100
E55 HAW1 1HAW H 0 0 N N N 49.411 24.366 36.102 5.804 -10.537 3.312 HAW1 E55 101
E55 HAW2 2HAW H 0 0 N N N 50.584 25.696 35.704 5.822 -9.917 1.644 HAW2 E55 102
E55 HAQ HAQ H 0 1 N N N 52.141 23.451 36.294 8.000 -9.113 3.707 HAQ E55 103
E55 HAR HAR H 0 1 N N N 52.000 23.917 38.685 7.652 -6.988 2.663 HAR E55 104
E55 HAX1 1HAX H 0 0 N N N 49.910 24.681 39.525 5.226 -8.530 1.486 HAX1 E55 105
E55 HAX2 2HAX H 0 0 N N N 49.432 25.234 37.866 6.201 -7.421 0.491 HAX2 E55 106
E55 HBD1 1HBD H 0 0 N N N 51.515 26.841 38.142 5.598 -5.543 1.993 HBD1 E55 107
E55 HBD2 2HBD H 0 0 N N N 51.227 26.547 39.906 4.623 -6.651 2.988 HBD2 E55 108
E55 HBI1 1HBI H 0 0 N N N 49.991 28.518 39.354 3.192 -7.154 1.026 HBI1 E55 109
E55 HBI2 2HBI H 0 0 N N N 48.785 27.171 39.461 4.167 -6.045 0.031 HBI2 E55 110
E55 HBL1 1HBL H 0 0 N N N 48.374 27.165 37.209 3.564 -4.167 1.533 HBL1 E55 111
E55 HBL2 2HBL H 0 0 N N N 50.040 27.790 36.807 2.589 -5.275 2.528 HBL2 E55 112
E55 HBO1 1HBO H 0 0 N N N 49.235 30.003 37.885 1.158 -5.777 0.566 HBO1 E55 113
E55 HBO2 2HBO H 0 0 N N N 47.579 29.332 37.699 2.133 -4.669 -0.428 HBO2 E55 114
E55 HBS1 1HBS H 0 0 N N N 47.637 29.448 35.389 1.530 -2.790 1.074 HBS1 E55 115
E55 HBS2 2HBS H 0 0 N N N 49.428 29.138 35.327 0.555 -3.899 2.068 HBS2 E55 116
E55 HBV1 1HBV H 0 0 N N N 49.614 31.543 36.365 -0.876 -4.401 0.106 HBV1 E55 117
E55 HBV2 2HBV H 0 0 N N N 47.942 31.755 35.752 0.099 -3.293 -0.888 HBV2 E55 118
E55 HBZ1 1HBZ H 0 0 N N N 49.575 30.450 33.728 -0.504 -1.414 0.614 HBZ1 E55 119
E55 HBZ2 2HBZ H 0 0 N N N 50.378 31.969 34.294 -1.479 -2.523 1.608 HBZ2 E55 120
E55 HCE1 1HCE H 0 0 N N N 48.220 33.175 33.929 -2.910 -3.025 -0.354 HCE1 E55 121
E55 HCE2 2HCE H 0 0 N N N 47.546 31.665 33.216 -1.935 -1.917 -1.348 HCE2 E55 122
E55 HCK HCK H 0 1 N N N 48.801 34.548 32.436 -4.499 -1.087 -1.344 HCK E55 123
E55 HDE HDE H 0 1 N N N 50.495 33.706 30.156 -5.049 0.557 1.007 HDE E55 124
E55 HDC HDC H 0 1 N N N 47.857 35.229 29.775 -4.431 1.792 -1.716 HDC E55 125
E55 H61 1H6 H 0 1 N N N 47.011 33.752 27.321 -3.029 4.060 -0.419 H61 E55 126
E55 H62 2H6 H 0 1 N N N 46.121 34.322 28.708 -2.379 3.050 -1.732 H62 E55 127
E55 H5 H5 H 0 1 N N N 44.971 32.256 28.233 -1.152 3.269 1.053 H5 E55 128
E55 H1 H1 H 0 1 N N N 46.948 29.207 27.056 1.547 1.204 -0.228 H1 E55 129
E55 HAM HAM H 0 1 N N N 42.843 29.244 26.124 0.915 0.361 4.566 HAM E55 130
E55 HAN HAN H 0 1 N N N 44.548 32.030 26.254 -1.278 0.486 2.299 HAN E55 131
E55 H2 H2 H 0 1 N N N 47.372 29.253 29.299 1.888 3.318 -1.450 H2 E55 132
E55 HN2 HN2 H 0 1 N N N 44.722 27.942 29.359 3.289 3.850 1.056 HN2 E55 133
E55 HCH1 1HCH H 0 0 N N N 45.945 24.746 28.483 5.456 2.265 1.291 HCH1 E55 134
E55 HCH2 2HCH H 0 0 N N N 44.482 25.719 28.375 5.880 3.702 0.329 HCH2 E55 135
E55 HCD1 1HCD H 0 0 N N N 43.526 24.222 30.157 7.940 1.234 0.847 HCD1 E55 136
E55 HCD2 2HCD H 0 0 N N N 43.328 25.560 31.349 8.364 2.671 -0.115 HCD2 E55 137
E55 HBY1 1HBY H 0 0 N N N 45.008 24.369 32.844 8.564 1.255 -2.141 HBY1 E55 138
E55 HBY2 2HBY H 0 0 N N N 44.993 22.999 31.711 8.139 -0.181 -1.179 HBY2 E55 139
E55 HBU1 1HBU H 0 0 N N N 42.580 22.718 31.994 10.130 0.189 0.252 HBU1 E55 140
E55 HBU2 2HBU H 0 0 N N N 42.502 24.214 33.004 10.554 1.626 -0.710 HBU2 E55 141
E55 HBR1 1HBR H 0 0 N N N 43.886 23.168 34.713 10.754 0.211 -2.736 HBR1 E55 142
E55 HBR2 2HBR H 0 0 N N N 44.072 21.698 33.702 10.330 -1.226 -1.774 HBR2 E55 143
E55 HBP1 1HBP H 0 0 N N N 41.487 21.555 33.699 12.320 -0.855 -0.343 HBP1 E55 144
E55 HBP2 2HBP H 0 0 N N N 41.514 22.793 34.990 12.744 0.581 -1.305 HBP2 E55 145
E55 HBM1 1HBM H 0 0 N N N 43.101 21.303 36.286 12.944 -0.834 -3.331 HBM1 E55 146
E55 HBM2 2HBM H 0 0 N N N 42.875 20.047 35.041 12.520 -2.271 -2.369 HBM2 E55 147
E55 HBJ1 1HBJ H 0 0 N N N 40.560 19.813 35.529 14.510 -1.900 -0.938 HBJ1 E55 148
E55 HBJ2 2HBJ H 0 0 N N N 40.488 21.389 36.377 14.934 -0.464 -1.900 HBJ2 E55 149
E55 HBF1 1HBF H 0 0 N N N 41.552 20.561 38.288 15.134 -1.879 -3.926 HBF1 E55 150
E55 HBF2 2HBF H 0 0 N N N 42.351 19.230 37.396 14.710 -3.316 -2.964 HBF2 E55 151
E55 HAZ1 1HAZ H 0 0 N N N 40.110 18.173 37.032 16.701 -2.945 -1.533 HAZ1 E55 152
E55 HAZ2 2HAZ H 0 0 N N N 39.352 19.465 37.985 17.125 -1.509 -2.495 HAZ2 E55 153
E55 HAT1 1HAT H 0 0 N N N 41.195 18.866 39.789 17.324 -2.924 -4.521 HAT1 E55 154
E55 HAT2 2HAT H 0 0 N N N 41.328 17.325 38.873 16.900 -4.361 -3.559 HAT2 E55 155
E55 HAB1 1HAB H 0 0 N N N 39.607 17.525 40.886 19.315 -2.553 -3.090 HAB1 E55 156
E55 HAB2 2HAB H 0 0 N N N 38.589 18.370 39.670 18.891 -3.990 -2.128 HAB2 E55 157
E55 HAB3 3HAB H 0 0 N N N 39.125 16.681 39.375 19.357 -4.169 -3.837 HAB3 E55 158
E55 H3 H3 H 0 1 N N N 44.501 30.055 29.842 0.985 4.645 1.149 H3 E55 159
E55 HCB1 1HCB H 0 0 N N N 43.984 29.797 32.294 0.483 7.166 0.453 HCB1 E55 160
E55 HCB2 2HCB H 0 0 N N N 44.594 28.291 31.603 1.942 6.721 1.371 HCB2 E55 161
E55 HBX1 1HBX H 0 0 N N N 46.535 28.426 33.292 3.355 7.843 -0.329 HBX1 E55 162
E55 HBX2 2HBX H 0 0 N N N 45.571 29.790 34.075 1.897 8.288 -1.247 HBX2 E55 163
E55 HBT1 1HBT H 0 0 N N N 44.178 28.364 35.122 1.067 9.583 0.698 HBT1 E55 164
E55 HBT2 2HBT H 0 0 N N N 44.069 27.261 33.733 2.526 9.137 1.616 HBT2 E55 165
E55 HBQ1 1HBQ H 0 0 N N N 46.103 26.148 34.287 3.939 10.260 -0.084 HBQ1 E55 166
E55 HBQ2 2HBQ H 0 0 N N N 46.651 27.540 35.338 2.481 10.705 -1.002 HBQ2 E55 167
E55 HBN1 1HBN H 0 0 N N N 45.382 26.877 37.123 1.651 12.000 0.943 HBN1 E55 168
E55 HBN2 2HBN H 0 0 N N N 44.214 25.948 36.069 3.110 11.554 1.861 HBN2 E55 169
E55 HBK1 1HBK H 0 0 N N N 45.757 24.139 35.809 4.523 12.677 0.161 HBK1 E55 170
E55 HBK2 2HBK H 0 0 N N N 47.093 25.089 36.585 3.065 13.122 -0.757 HBK2 E55 171
E55 HBG1 1HBG H 0 0 N N N 46.049 24.980 38.735 2.236 14.417 1.188 HBG1 E55 172
E55 HBG2 2HBG H 0 0 N N N 44.513 24.290 37.991 3.694 13.971 2.106 HBG2 E55 173
E55 HBA1 1HBA H 0 0 N N N 46.205 22.333 37.301 5.107 15.093 0.406 HBA1 E55 174
E55 HBA2 2HBA H 0 0 N N N 47.082 22.905 38.744 3.649 15.539 -0.512 HBA2 E55 175
E55 HAU1 1HAU H 0 0 N N N 44.591 22.964 39.778 2.820 16.833 1.433 HAU1 E55 176
E55 HAU2 2HAU H 0 0 N N N 44.337 21.696 38.485 4.278 16.388 2.351 HAU2 E55 177
E55 HAC1 1HAC H 0 0 N N N 45.810 20.198 39.487 5.691 17.510 0.651 HAC1 E55 178
E55 HAC2 2HAC H 0 0 N N N 46.635 21.478 40.440 4.233 17.956 -0.267 HAC2 E55 179
E55 HAC3 3HAC H 0 0 N N N 44.984 20.939 40.900 4.511 18.645 1.350 HAC3 E55 180
E55 H4 H4 H 0 1 N N N 47.327 31.422 29.995 -0.340 4.540 -1.602 H4 E55 181
E55 HO4 HO4 H 0 1 N N N 45.574 31.940 31.668 -2.043 5.697 -0.388 HO4 E55 182
E55 HDB HDB H 0 1 N N N 48.806 37.091 28.797 -6.627 2.829 -1.796 HDB E55 183
E55 HCI1 1HCI H 0 0 N N N 51.041 37.479 27.165 -8.457 3.994 -0.529 HCI1 E55 184
E55 HCI2 2HCI H 0 0 N N N 50.164 36.125 26.387 -7.345 4.170 0.850 HCI2 E55 185
E55 HAE1 1HAE H 0 0 N N N 48.081 37.932 24.747 -8.560 6.428 -0.756 HAE1 E55 186
E55 HAE2 2HAE H 0 0 N N N 49.635 38.830 24.798 -7.448 6.604 0.622 HAE2 E55 187
E55 HAE3 3HAE H 0 0 N N N 49.636 37.034 24.769 -7.031 7.318 -0.954 HAE3 E55 188
E55 HDI HDI H 0 1 N N N 51.646 36.086 29.078 -7.350 1.644 0.924 HDI E55 189
E55 HAO HAO H 0 1 N N N 52.780 39.296 31.311 -12.089 1.454 -0.202 HAO E55 190
E55 HAP HAP H 0 1 N N N 53.636 37.163 28.558 -9.927 -0.693 0.623 HAP E55 191
E55 HDH HDH H 0 1 N N N 49.699 36.447 31.322 -6.484 0.294 -1.676 HDH E55 192
E55 HCC1 1HCC H 0 0 N N N 52.652 37.141 32.146 -8.866 -0.722 -1.033 HCC1 E55 193
E55 HCC2 2HCC H 0 0 N N N 50.954 36.973 32.832 -7.602 -1.709 -1.806 HCC2 E55 194
E55 HCG1 1HCG H 0 0 N N N 53.272 35.178 33.656 -7.785 -3.374 0.022 HCG1 E55 195
E55 HCG2 2HCG H 0 0 N N N 52.859 36.707 34.507 -9.048 -2.387 0.795 HCG2 E55 196
E55 HCY HCY H 0 1 N N N 50.926 34.362 34.029 -9.231 -3.535 -2.026 HCY E55 197
E55 HCF1 1HCF H 0 0 N N N 52.821 35.186 36.200 -9.249 -5.286 -0.237 HCF1 E55 198
E55 HCF2 2HCF H 0 0 N N N 51.144 34.642 36.703 -10.599 -4.433 0.549 HCF2 E55 199
E55 HCA1 1HCA H 0 0 N N N 51.509 32.527 35.472 -11.981 -4.721 -1.473 HCA1 E55 200
E55 HCA2 2HCA H 0 0 N N N 53.186 33.038 35.110 -10.627 -5.527 -2.300 HCA2 E55 201
E55 HBW1 1HBW H 0 0 N N N 53.400 33.428 37.691 -10.639 -7.312 -0.579 HBW1 E55 202
E55 HBW2 2HBW H 0 0 N N N 51.909 32.420 37.809 -11.993 -6.506 0.248 HBW2 E55 203
E55 HBH1 1HBH H 0 0 N N N 53.924 31.253 36.021 -13.387 -6.762 -1.787 HBH1 E55 204
E55 HBH2 2HBH H 0 0 N N N 54.533 31.487 37.703 -12.033 -7.568 -2.614 HBH2 E55 205
E55 HBB1 1HBB H 0 0 N N N 52.768 30.185 38.632 -12.045 -9.353 -0.893 HBB1 E55 206
E55 HBB2 2HBB H 0 0 N N N 51.842 30.210 37.077 -13.399 -8.547 -0.067 HBB2 E55 207
E55 HAV1 1HAV H 0 0 N N N 54.606 29.045 37.010 -14.793 -8.803 -2.101 HAV1 E55 208
E55 HAV2 2HAV H 0 0 N N N 53.314 28.094 37.856 -13.439 -9.609 -2.928 HAV2 E55 209
E55 HAD1 1HAD H 0 0 N N N 51.898 28.257 35.803 -13.451 -11.395 -1.207 HAD1 E55 210
E55 HAD2 2HAD H 0 0 N N N 53.239 29.108 34.965 -14.805 -10.589 -0.380 HAD2 E55 211
E55 HAD3 3HAD H 0 0 N N N 53.450 27.406 35.500 -15.035 -11.269 -2.009 HAD3 E55 212
E55 HAF1 1HAF H 0 0 N N N 50.875 36.125 37.036 -10.576 -2.213 -3.225 HAF1 E55 213
E55 HAF2 2HAF H 0 0 N N N 51.733 37.307 35.991 -11.773 -3.425 -2.709 HAF2 E55 214
E55 HAF3 3HAF H 0 0 N N N 50.016 37.585 36.440 -12.134 -1.690 -2.539 HAF3 E55 215
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
E55 CAB CAT SING N N 1
E55 CAB HAB1 SING N N 2
E55 CAB HAB2 SING N N 3
E55 CAB HAB3 SING N N 4
E55 CAT CAZ SING N N 5
E55 CAT HAT1 SING N N 6
E55 CAT HAT2 SING N N 7
E55 CAZ CBF SING N N 8
E55 CAZ HAZ1 SING N N 9
E55 CAZ HAZ2 SING N N 10
E55 CBF CBJ SING N N 11
E55 CBF HBF1 SING N N 12
E55 CBF HBF2 SING N N 13
E55 CBJ CBM SING N N 14
E55 CBJ HBJ1 SING N N 15
E55 CBJ HBJ2 SING N N 16
E55 CBM CBP SING N N 17
E55 CBM HBM1 SING N N 18
E55 CBM HBM2 SING N N 19
E55 CBP CBR SING N N 20
E55 CBP HBP1 SING N N 21
E55 CBP HBP2 SING N N 22
E55 CBR CBU SING N N 23
E55 CBR HBR1 SING N N 24
E55 CBR HBR2 SING N N 25
E55 CBU CBY SING N N 26
E55 CBU HBU1 SING N N 27
E55 CBU HBU2 SING N N 28
E55 CBY CCD SING N N 29
E55 CBY HBY1 SING N N 30
E55 CBY HBY2 SING N N 31
E55 CCD CCV SING N N 32
E55 CCD HCD1 SING N N 33
E55 CCD HCD2 SING N N 34
E55 CCV CCH SING N N 35
E55 CCV OAG DOUB N N 36
E55 CCH CCX SING N N 37
E55 CCH HCH1 SING N N 38
E55 CCH HCH2 SING N N 39
E55 CCX N2 SING N N 40
E55 CCX OAI DOUB N N 41
E55 N2 C2 SING N N 42
E55 N2 HN2 SING N N 43
E55 C2 C1 SING N N 44
E55 C2 C3 SING N N 45
E55 C2 H2 SING N N 46
E55 C3 O3 SING N N 47
E55 C3 C4 SING N N 48
E55 C3 H3 SING N N 49
E55 C4 C5 SING N N 50
E55 C4 O4 SING N N 51
E55 C4 H4 SING N N 52
E55 O4 HO4 SING N N 53
E55 O3 CCB SING N N 54
E55 CCB CBX SING N N 55
E55 CCB HCB1 SING N N 56
E55 CCB HCB2 SING N N 57
E55 CBX CBT SING N N 58
E55 CBX HBX1 SING N N 59
E55 CBX HBX2 SING N N 60
E55 CBT CBQ SING N N 61
E55 CBT HBT1 SING N N 62
E55 CBT HBT2 SING N N 63
E55 CBQ CBN SING N N 64
E55 CBQ HBQ1 SING N N 65
E55 CBQ HBQ2 SING N N 66
E55 CBN CBK SING N N 67
E55 CBN HBN1 SING N N 68
E55 CBN HBN2 SING N N 69
E55 CBK CBG SING N N 70
E55 CBK HBK1 SING N N 71
E55 CBK HBK2 SING N N 72
E55 CBG CBA SING N N 73
E55 CBG HBG1 SING N N 74
E55 CBG HBG2 SING N N 75
E55 CBA CAU SING N N 76
E55 CBA HBA1 SING N N 77
E55 CBA HBA2 SING N N 78
E55 CAU CAC SING N N 79
E55 CAU HAU1 SING N N 80
E55 CAU HAU2 SING N N 81
E55 CAC HAC1 SING N N 82
E55 CAC HAC2 SING N N 83
E55 CAC HAC3 SING N N 84
E55 C1 O5 SING N N 85
E55 C1 O1 SING N N 86
E55 C1 H1 SING N N 87
E55 O1 PDJ SING N N 88
E55 PDJ OAM SING N N 89
E55 PDJ OAN SING N N 90
E55 PDJ OAJ DOUB N N 91
E55 OAM HAM SING N N 92
E55 OAN HAN SING N N 93
E55 O5 C5 SING N N 94
E55 C5 C6 SING N N 95
E55 C5 H5 SING N N 96
E55 C6 O6 SING N N 97
E55 C6 H61 SING N N 98
E55 C6 H62 SING N N 99
E55 O6 CDC SING N N 100
E55 CDC CDE SING N N 101
E55 CDC OCR SING N N 102
E55 CDC HDC SING N N 103
E55 OCR CDB SING N N 104
E55 CDB CCI SING N N 105
E55 CDB CDI SING N N 106
E55 CDB HDB SING N N 107
E55 CCI OCM SING N N 108
E55 CCI HCI1 SING N N 109
E55 CCI HCI2 SING N N 110
E55 OCM CAE SING N N 111
E55 CAE HAE1 SING N N 112
E55 CAE HAE2 SING N N 113
E55 CAE HAE3 SING N N 114
E55 CDI OCU SING N N 115
E55 CDI CDH SING N N 116
E55 CDI HDI SING N N 117
E55 OCU PDK SING N N 118
E55 PDK OAO SING N N 119
E55 PDK OAP SING N N 120
E55 PDK OAK DOUB N N 121
E55 OAO HAO SING N N 122
E55 OAP HAP SING N N 123
E55 CDH CDE SING N N 124
E55 CDH OCP SING N N 125
E55 CDH HDH SING N N 126
E55 OCP CCC SING N N 127
E55 CCC CCG SING N N 128
E55 CCC HCC1 SING N N 129
E55 CCC HCC2 SING N N 130
E55 CCG CCY SING N N 131
E55 CCG HCG1 SING N N 132
E55 CCG HCG2 SING N N 133
E55 CCY CCF SING N N 134
E55 CCY OCN SING N N 135
E55 CCY HCY SING N N 136
E55 OCN CAF SING N N 137
E55 CAF HAF1 SING N N 138
E55 CAF HAF2 SING N N 139
E55 CAF HAF3 SING N N 140
E55 CCF CCA SING N N 141
E55 CCF HCF1 SING N N 142
E55 CCF HCF2 SING N N 143
E55 CCA CBW SING N N 144
E55 CCA HCA1 SING N N 145
E55 CCA HCA2 SING N N 146
E55 CBW CBH SING N N 147
E55 CBW HBW1 SING N N 148
E55 CBW HBW2 SING N N 149
E55 CBH CBB SING N N 150
E55 CBH HBH1 SING N N 151
E55 CBH HBH2 SING N N 152
E55 CBB CAV SING N N 153
E55 CBB HBB1 SING N N 154
E55 CBB HBB2 SING N N 155
E55 CAV CAD SING N N 156
E55 CAV HAV1 SING N N 157
E55 CAV HAV2 SING N N 158
E55 CAD HAD1 SING N N 159
E55 CAD HAD2 SING N N 160
E55 CAD HAD3 SING N N 161
E55 CDE NCK SING N N 162
E55 CDE HDE SING N N 163
E55 NCK CCW SING N N 164
E55 NCK HCK SING N N 165
E55 CCW CCE SING N N 166
E55 CCW OAH DOUB N N 167
E55 CCE CBZ SING N N 168
E55 CCE HCE1 SING N N 169
E55 CCE HCE2 SING N N 170
E55 CBZ CBV SING N N 171
E55 CBZ HBZ1 SING N N 172
E55 CBZ HBZ2 SING N N 173
E55 CBV CBS SING N N 174
E55 CBV HBV1 SING N N 175
E55 CBV HBV2 SING N N 176
E55 CBS CBO SING N N 177
E55 CBS HBS1 SING N N 178
E55 CBS HBS2 SING N N 179
E55 CBO CBL SING N N 180
E55 CBO HBO1 SING N N 181
E55 CBO HBO2 SING N N 182
E55 CBL CBI SING N N 183
E55 CBL HBL1 SING N N 184
E55 CBL HBL2 SING N N 185
E55 CBI CBD SING N N 186
E55 CBI HBI1 SING N N 187
E55 CBI HBI2 SING N N 188
E55 CBD CAX SING N N 189
E55 CBD HBD1 SING N N 190
E55 CBD HBD2 SING N N 191
E55 CAX CAR SING N N 192
E55 CAX HAX1 SING N N 193
E55 CAX HAX2 SING N N 194
E55 CAR CAQ DOUB N Z 195
E55 CAR HAR SING N N 196
E55 CAQ CAW SING N N 197
E55 CAQ HAQ SING N N 198
E55 CAW CBC SING N N 199
E55 CAW HAW1 SING N N 200
E55 CAW HAW2 SING N N 201
E55 CBC CBE SING N N 202
E55 CBC HBC1 SING N N 203
E55 CBC HBC2 SING N N 204
E55 CBE CAY SING N N 205
E55 CBE HBE1 SING N N 206
E55 CBE HBE2 SING N N 207
E55 CAY CAS SING N N 208
E55 CAY HAY1 SING N N 209
E55 CAY HAY2 SING N N 210
E55 CAS CAA SING N N 211
E55 CAS HAS1 SING N N 212
E55 CAS HAS2 SING N N 213
E55 CAA HAA1 SING N N 214
E55 CAA HAA2 SING N N 215
E55 CAA HAA3 SING N N 216
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
E55 SMILES ACDLabs 10.04 "O=P(OC1OC(C(O)C(OCCCCCCCCCC)C1NC(=O)CC(=O)CCCCCCCCCCC)COC2OC(COC)C(OP(=O)(O)O)C(OCCC(OC)CCCCCCC)C2NC(=O)CCCCCCCCC\C=C/CCCCCC)(O)O"
E55 SMILES_CANONICAL CACTVS 3.341 "CCCCCCCCCCCC(=O)CC(=O)N[C@H]1[C@H](O[C@H](CO[C@@H]2O[C@H](COC)[C@@H](O[P](O)(O)=O)[C@H](OCC[C@@H](CCCCCCC)OC)[C@H]2NC(=O)CCCCCCCCC\C=C/CCCCCC)[C@@H](O)[C@@H]1OCCCCCCCCCC)O[P](O)(O)=O"
E55 SMILES CACTVS 3.341 "CCCCCCCCCCCC(=O)CC(=O)N[CH]1[CH](O[CH](CO[CH]2O[CH](COC)[CH](O[P](O)(O)=O)[CH](OCC[CH](CCCCCCC)OC)[CH]2NC(=O)CCCCCCCCCC=CCCCCCC)[CH](O)[CH]1OCCCCCCCCCC)O[P](O)(O)=O"
E55 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCCCC(=O)CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1OP(=O)(O)O)CO[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)COC)OP(=O)(O)O)OCC[C@@H](CCCCCCC)OC)NC(=O)CCCCCCCCC\C=C/CCCCCC)O)OCCCCCCCCCC"
E55 SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCCCC(=O)CC(=O)NC1C(C(C(OC1OP(=O)(O)O)COC2C(C(C(C(O2)COC)OP(=O)(O)O)OCCC(CCCCCCC)OC)NC(=O)CCCCCCCCCC=CCCCCCC)O)OCCCCCCCCCC"
E55 InChI InChI 1.03 "InChI=1S/C66H126N2O19P2/c1-7-11-15-19-22-25-26-27-28-29-30-32-34-38-42-46-57(70)67-60-64(82-49-47-54(80-6)45-41-36-18-14-10-4)62(86-88(73,74)75)56(51-79-5)85-65(60)83-52-55-61(72)63(81-48-43-39-35-24-21-17-13-9-3)59(66(84-55)87-89(76,77)78)68-58(71)50-53(69)44-40-37-33-31-23-20-16-12-8-2/h25-26,54-56,59-66,72H,7-24,27-52H2,1-6H3,(H,67,70)(H,68,71)(H2,73,74,75)(H2,76,77,78)/b26-25-/t54-,55-,56-,59-,60-,61-,62-,63-,64-,65-,66-/m1/s1"
E55 InChIKey InChI 1.03 BPSMYQFMCXXNPC-MFCPCZTFSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
E55 "SYSTEMATIC NAME" ACDLabs 10.04 "3-O-decyl-2-deoxy-6-O-{2-deoxy-3-O-[(3R)-3-methoxydecyl]-6-O-methyl-2-[(11Z)-octadec-11-enoylamino]-4-O-phosphono-beta-D-glucopyranosyl}-2-[(3-oxotetradecanoyl)amino]-1-O-phosphono-alpha-D-glucopyranose"
E55 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4R,5S,6R)-4-decoxy-5-hydroxy-6-[[(2R,3R,4R,5S,6R)-4-[(3R)-3-methoxydecoxy]-6-(methoxymethyl)-3-[[(Z)-octadec-11-enoyl]amino]-5-phosphonooxy-oxan-2-yl]oxymethyl]-3-(3-oxotetradecanoylamino)oxan-2-yl] dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
E55 "Create component" 2007-08-01 RCSB
E55 "Modify descriptor" 2011-06-04 RCSB
E55 "Modify synonyms" 2020-05-27 PDBE
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 E55 E5564 ? ?
2 E55 ERITORAN ? ?
#