data_E9O # _chem_comp.id E9O _chem_comp.name "(2~{S},3~{S},4~{R},5~{R})-2-nonyl-4,5-bis(oxidanyl)piperidine-3-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H29 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-11-25 _chem_comp.pdbx_modified_date 2021-01-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 287.395 _chem_comp.one_letter_code ? _chem_comp.three_letter_code E9O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6LDC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal E9O C2 C1 C 0 1 N N N -1.164 -13.554 -54.307 3.108 2.298 0.228 C2 E9O 1 E9O C3 C2 C 0 1 N N R -2.616 -13.074 -54.315 4.362 1.577 -0.272 C3 E9O 2 E9O O3 O1 O 0 1 N N N -3.252 -13.545 -55.515 5.524 2.209 0.270 O3 E9O 3 E9O N N1 N 0 1 N N N -0.554 -13.417 -52.987 1.914 1.637 -0.313 N E9O 4 E9O C7 C3 C 0 1 N N S -1.332 -13.815 -51.824 1.825 0.244 0.145 C7 E9O 5 E9O C5 C4 C 0 1 N N S -2.654 -13.058 -51.828 3.040 -0.538 -0.357 C5 E9O 6 E9O C6 C5 C 0 1 N N N -3.455 -13.318 -50.573 2.960 -1.961 0.131 C6 E9O 7 E9O O62 O2 O 0 1 N N N -3.394 -14.492 -49.937 3.925 -2.836 -0.189 O62 E9O 8 E9O C4 C6 C 0 1 N N R -3.381 -13.543 -53.074 4.318 0.115 0.178 C4 E9O 9 E9O O4 O3 O 0 1 N N N -4.708 -13.023 -53.057 5.458 -0.577 -0.333 O4 E9O 10 E9O O61 O4 O 0 1 N N N -4.184 -12.452 -50.106 2.026 -2.314 0.811 O61 E9O 11 E9O C8 C7 C 0 1 N N N -0.520 -13.601 -50.561 0.547 -0.392 -0.404 C8 E9O 12 E9O C9 C8 C 0 1 N N N 0.517 -14.708 -50.482 -0.672 0.310 0.197 C9 E9O 13 E9O C10 C9 C 0 1 N N N 1.325 -14.531 -49.217 -1.951 -0.326 -0.352 C10 E9O 14 E9O C1 C10 C 0 1 N N N 2.306 -15.677 -49.026 -3.169 0.376 0.249 C1 E9O 15 E9O C11 C11 C 0 1 N N N 3.271 -15.283 -47.922 -4.448 -0.260 -0.300 C11 E9O 16 E9O C12 C12 C 0 1 N N N 3.382 -16.369 -46.862 -5.666 0.442 0.301 C12 E9O 17 E9O C13 C13 C 0 1 N N N 4.258 -15.862 -45.722 -6.945 -0.194 -0.248 C13 E9O 18 E9O C14 C14 C 0 1 N N N 4.788 -17.019 -44.888 -8.163 0.508 0.354 C14 E9O 19 E9O C15 C15 C 0 1 N N N 5.560 -16.505 -43.697 -9.442 -0.128 -0.196 C15 E9O 20 E9O H1 H1 H 0 1 N N N -1.138 -14.613 -54.603 3.080 2.266 1.317 H1 E9O 21 E9O H2 H2 H 0 1 N N N -0.588 -12.957 -55.029 3.130 3.336 -0.104 H2 E9O 22 E9O H3 H3 H 0 1 N N N -2.611 -11.974 -54.316 4.398 1.622 -1.361 H3 E9O 23 E9O H4 H4 H 0 1 N N N -4.156 -13.252 -55.531 5.615 3.141 0.027 H4 E9O 24 E9O H5 H5 H 0 1 N N N 0.281 -13.968 -52.988 1.078 2.150 -0.075 H5 E9O 25 E9O H7 H7 H 0 1 N N N -1.559 -14.889 -51.902 1.803 0.221 1.235 H7 E9O 26 E9O H8 H8 H 0 1 N N N -2.455 -11.980 -51.919 3.055 -0.527 -1.447 H8 E9O 27 E9O H9 H9 H 0 1 N N N -3.961 -14.470 -49.175 3.830 -3.738 0.147 H9 E9O 28 E9O H10 H10 H 0 1 N N N -3.404 -14.643 -53.067 4.323 0.069 1.268 H10 E9O 29 E9O H11 H11 H 0 1 N N N -5.159 -13.329 -52.279 6.305 -0.214 -0.038 H11 E9O 30 E9O H12 H12 H 0 1 N N N -0.020 -12.622 -50.599 0.527 -0.289 -1.489 H12 E9O 31 E9O H13 H13 H 0 1 N N N -1.179 -13.642 -49.681 0.524 -1.449 -0.139 H13 E9O 32 E9O H14 H14 H 0 1 N N N 0.013 -15.686 -50.465 -0.652 0.208 1.282 H14 E9O 33 E9O H15 H15 H 0 1 N N N 1.183 -14.654 -51.356 -0.650 1.367 -0.068 H15 E9O 34 E9O H16 H16 H 0 1 N N N 1.885 -13.586 -49.278 -1.970 -0.223 -1.437 H16 E9O 35 E9O H17 H17 H 0 1 N N N 0.641 -14.497 -48.356 -1.973 -1.383 -0.087 H17 E9O 36 E9O H18 H18 H 0 1 N N N 1.763 -16.590 -48.740 -3.149 0.273 1.334 H18 E9O 37 E9O H19 H19 H 0 1 N N N 2.859 -15.856 -49.960 -3.147 1.433 -0.016 H19 E9O 38 E9O H20 H20 H 0 1 N N N 4.265 -15.110 -48.361 -4.468 -0.157 -1.385 H20 E9O 39 E9O H21 H21 H 0 1 N N N 2.913 -14.357 -47.448 -4.470 -1.317 -0.035 H21 E9O 40 E9O H22 H22 H 0 1 N N N 2.381 -16.613 -46.477 -5.647 0.340 1.386 H22 E9O 41 E9O H23 H23 H 0 1 N N N 3.835 -17.270 -47.303 -5.644 1.499 0.036 H23 E9O 42 E9O H24 H24 H 0 1 N N N 5.107 -15.302 -46.142 -6.965 -0.091 -1.333 H24 E9O 43 E9O H25 H25 H 0 1 N N N 3.663 -15.197 -45.079 -6.967 -1.251 0.018 H25 E9O 44 E9O H26 H26 H 0 1 N N N 3.942 -17.628 -44.535 -8.144 0.405 1.439 H26 E9O 45 E9O H27 H27 H 0 1 N N N 5.452 -17.638 -45.509 -8.141 1.565 0.088 H27 E9O 46 E9O H28 H28 H 0 1 N N N 5.934 -17.355 -43.108 -10.310 0.372 0.233 H28 E9O 47 E9O H29 H29 H 0 1 N N N 6.409 -15.898 -44.045 -9.462 -0.025 -1.281 H29 E9O 48 E9O H30 H30 H 0 1 N N N 4.899 -15.887 -43.071 -9.464 -1.185 0.070 H30 E9O 49 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal E9O O3 C3 SING N N 1 E9O C3 C2 SING N N 2 E9O C3 C4 SING N N 3 E9O C2 N SING N N 4 E9O C4 O4 SING N N 5 E9O C4 C5 SING N N 6 E9O N C7 SING N N 7 E9O C5 C7 SING N N 8 E9O C5 C6 SING N N 9 E9O C7 C8 SING N N 10 E9O C6 O61 DOUB N N 11 E9O C6 O62 SING N N 12 E9O C8 C9 SING N N 13 E9O C9 C10 SING N N 14 E9O C10 C1 SING N N 15 E9O C1 C11 SING N N 16 E9O C11 C12 SING N N 17 E9O C12 C13 SING N N 18 E9O C13 C14 SING N N 19 E9O C14 C15 SING N N 20 E9O C2 H1 SING N N 21 E9O C2 H2 SING N N 22 E9O C3 H3 SING N N 23 E9O O3 H4 SING N N 24 E9O N H5 SING N N 25 E9O C7 H7 SING N N 26 E9O C5 H8 SING N N 27 E9O O62 H9 SING N N 28 E9O C4 H10 SING N N 29 E9O O4 H11 SING N N 30 E9O C8 H12 SING N N 31 E9O C8 H13 SING N N 32 E9O C9 H14 SING N N 33 E9O C9 H15 SING N N 34 E9O C10 H16 SING N N 35 E9O C10 H17 SING N N 36 E9O C1 H18 SING N N 37 E9O C1 H19 SING N N 38 E9O C11 H20 SING N N 39 E9O C11 H21 SING N N 40 E9O C12 H22 SING N N 41 E9O C12 H23 SING N N 42 E9O C13 H24 SING N N 43 E9O C13 H25 SING N N 44 E9O C14 H26 SING N N 45 E9O C14 H27 SING N N 46 E9O C15 H28 SING N N 47 E9O C15 H29 SING N N 48 E9O C15 H30 SING N N 49 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor E9O InChI InChI 1.03 "InChI=1S/C15H29NO4/c1-2-3-4-5-6-7-8-9-11-13(15(19)20)14(18)12(17)10-16-11/h11-14,16-18H,2-10H2,1H3,(H,19,20)/t11-,12+,13-,14-/m0/s1" E9O InChIKey InChI 1.03 PFGVLKMJAGVUAN-CRWXNKLISA-N E9O SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCC[C@@H]1NC[C@@H](O)[C@H](O)[C@H]1C(O)=O" E9O SMILES CACTVS 3.385 "CCCCCCCCC[CH]1NC[CH](O)[CH](O)[CH]1C(O)=O" E9O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCC[C@H]1[C@@H]([C@H]([C@@H](CN1)O)O)C(=O)O" E9O SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCC1C(C(C(CN1)O)O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id E9O _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{S},4~{R},5~{R})-2-nonyl-4,5-bis(oxidanyl)piperidine-3-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site E9O "Create component" 2019-11-25 PDBJ E9O "Initial release" 2021-01-27 RCSB ##