data_E9U # _chem_comp.id E9U _chem_comp.name "(2~{S})-4-[(2~{R})-2-azanyl-3-oxidanyl-3-oxidanylidene-propyl]sulfanyl-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H22 N3 O9 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-11-27 _chem_comp.pdbx_modified_date 2020-10-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 451.389 _chem_comp.one_letter_code ? _chem_comp.three_letter_code E9U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6LE4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal E9U N1 N1 N 0 1 Y N N -7.241 -47.096 -24.131 -3.191 0.811 -3.091 N1 E9U 1 E9U C2 C1 C 0 1 Y N N -6.095 -46.813 -24.771 -2.249 1.732 -3.090 C2 E9U 2 E9U C3 C2 C 0 1 Y N N -5.443 -45.601 -24.586 -1.468 1.947 -1.964 C3 E9U 3 E9U N N2 N 0 1 N N N -4.321 -42.974 -24.240 0.037 2.252 0.433 N E9U 4 E9U CA C3 C 0 1 N N S -3.552 -41.735 -24.084 0.834 2.440 1.648 CA E9U 5 E9U C C4 C 0 1 N N N -2.150 -42.039 -24.538 0.661 3.852 2.148 C E9U 6 E9U O O1 O 0 1 N N N -1.719 -43.294 -24.462 1.303 4.254 3.256 O E9U 7 E9U CB C5 C 0 1 N N N -3.620 -41.259 -22.624 2.310 2.187 1.334 CB E9U 8 E9U CG C6 C 0 1 N N N -2.691 -40.098 -22.256 2.504 0.720 0.946 CG E9U 9 E9U SD S1 S 0 1 N N N -2.148 -40.351 -20.591 4.254 0.420 0.573 SD E9U 10 E9U CE C7 C 0 1 N N N -3.299 -39.795 -19.360 4.283 -1.342 0.142 CE E9U 11 E9U CZ C8 C 0 1 N N R -2.684 -38.854 -18.301 5.714 -1.758 -0.204 CZ E9U 12 E9U CH C9 C 0 1 N N N -2.520 -39.559 -16.992 5.738 -3.222 -0.562 CH E9U 13 E9U NH N3 N 0 1 N N N -1.337 -38.387 -18.693 6.192 -0.967 -1.346 NH E9U 14 E9U C2A C10 C 0 1 N N N -5.535 -47.844 -25.702 -2.017 2.561 -4.326 C2A E9U 15 E9U C4 C11 C 0 1 Y N N -5.981 -44.648 -23.742 -1.697 1.165 -0.820 C4 E9U 16 E9U C4A C12 C 0 1 N N N -5.286 -43.346 -23.518 -0.894 1.355 0.404 C4A E9U 17 E9U C5 C13 C 0 1 Y N N -7.171 -44.973 -23.091 -2.710 0.200 -0.874 C5 E9U 18 E9U C5A C14 C 0 1 N N N -7.849 -44.013 -22.147 -3.003 -0.669 0.322 C5A E9U 19 E9U C6 C15 C 0 1 Y N N -7.782 -46.202 -23.302 -3.437 0.056 -2.038 C6 E9U 20 E9U O1P O2 O 0 1 N N N -7.542 -40.884 -22.351 -5.327 -1.869 2.301 O1P E9U 21 E9U O2P O3 O 0 1 N N N -9.779 -40.975 -23.413 -3.543 -3.490 1.553 O2P E9U 22 E9U O3 O4 O 0 1 N N N -4.286 -45.352 -25.251 -0.498 2.897 -1.967 O3 E9U 23 E9U O3P O5 O 0 1 N N N -9.592 -41.674 -20.954 -5.752 -3.561 0.333 O3P E9U 24 E9U O4P O6 O 0 1 N N N -8.728 -43.179 -22.884 -4.072 -1.564 0.011 O4P E9U 25 E9U OT O7 O 0 1 N N N -1.396 -41.196 -24.995 -0.054 4.621 1.551 OT E9U 26 E9U OX1 O8 O 0 1 N N N -3.535 -40.235 -16.483 5.758 -3.560 -1.722 OX1 E9U 27 E9U OX2 O9 O 0 1 N N N -1.456 -39.517 -16.393 5.738 -4.150 0.407 OX2 E9U 28 E9U P P1 P 0 1 N N N -8.938 -41.664 -22.415 -4.649 -2.640 1.060 P E9U 29 E9U H1 H1 H 0 1 N N N -3.978 -40.953 -24.730 0.500 1.740 2.414 H1 E9U 30 E9U H2 H2 H 0 1 N N N -0.832 -43.345 -24.797 1.161 5.168 3.538 H2 E9U 31 E9U H3 H3 H 0 1 N N N -4.653 -40.942 -22.421 2.620 2.826 0.507 H3 E9U 32 E9U H4 H4 H 0 1 N N N -3.365 -42.113 -21.979 2.912 2.414 2.213 H4 E9U 33 E9U H5 H5 H 0 1 N N N -1.825 -40.082 -22.934 2.194 0.082 1.773 H5 E9U 34 E9U H6 H6 H 0 1 N N N -3.234 -39.145 -22.332 1.901 0.494 0.066 H6 E9U 35 E9U H7 H7 H 0 1 N N N -4.115 -39.258 -19.867 3.929 -1.929 0.989 H7 E9U 36 E9U H8 H8 H 0 1 N N N -3.706 -40.677 -18.844 3.636 -1.516 -0.717 H8 E9U 37 E9U H9 H9 H 0 1 N N N -3.350 -37.989 -18.168 6.361 -1.584 0.655 H9 E9U 38 E9U H10 H10 H 0 1 N N N -0.974 -37.782 -17.984 5.608 -1.112 -2.156 H10 E9U 39 E9U H11 H11 H 0 1 N N N -0.730 -39.174 -18.802 6.246 0.013 -1.109 H11 E9U 40 E9U H13 H13 H 0 1 N N N -6.194 -48.725 -25.714 -1.283 2.067 -4.963 H13 E9U 41 E9U H14 H14 H 0 1 N N N -5.467 -47.424 -26.716 -2.955 2.671 -4.872 H14 E9U 42 E9U H15 H15 H 0 1 N N N -4.532 -48.141 -25.360 -1.646 3.545 -4.040 H15 E9U 43 E9U H16 H16 H 0 1 N N N -5.619 -42.705 -22.715 -1.084 0.744 1.274 H16 E9U 44 E9U H17 H17 H 0 1 N N N -8.421 -44.577 -21.396 -2.113 -1.242 0.581 H17 E9U 45 E9U H18 H18 H 0 1 N N N -7.091 -43.395 -21.643 -3.288 -0.041 1.166 H18 E9U 46 E9U H19 H19 H 0 1 N N N -8.704 -46.436 -22.790 -4.220 -0.686 -2.087 H19 E9U 47 E9U H20 H20 H 0 1 N N N -7.557 -40.156 -22.961 -6.062 -1.292 2.051 H20 E9U 48 E9U H21 H21 H 0 1 N N N -3.967 -44.488 -25.019 -0.801 3.769 -1.678 H21 E9U 49 E9U H22 H22 H 0 1 N N N -10.429 -41.225 -20.978 -6.143 -4.233 0.908 H22 E9U 50 E9U H23 H23 H 0 1 N N N -1.525 -40.017 -15.588 5.754 -5.076 0.129 H23 E9U 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal E9U C2A C2 SING N N 1 E9U O3 C3 SING N N 2 E9U OT C DOUB N N 3 E9U C2 C3 DOUB Y N 4 E9U C2 N1 SING Y N 5 E9U C3 C4 SING Y N 6 E9U C O SING N N 7 E9U C CA SING N N 8 E9U N CA SING N N 9 E9U N C4A DOUB N N 10 E9U N1 C6 DOUB Y N 11 E9U CA CB SING N N 12 E9U C4 C4A SING N N 13 E9U C4 C5 DOUB Y N 14 E9U O2P P DOUB N N 15 E9U C6 C5 SING Y N 16 E9U C5 C5A SING N N 17 E9U O4P P SING N N 18 E9U O4P C5A SING N N 19 E9U CB CG SING N N 20 E9U P O1P SING N N 21 E9U P O3P SING N N 22 E9U CG SD SING N N 23 E9U SD CE SING N N 24 E9U CE CZ SING N N 25 E9U NH CZ SING N N 26 E9U CZ CH SING N N 27 E9U CH OX1 DOUB N N 28 E9U CH OX2 SING N N 29 E9U CA H1 SING N N 30 E9U O H2 SING N N 31 E9U CB H3 SING N N 32 E9U CB H4 SING N N 33 E9U CG H5 SING N N 34 E9U CG H6 SING N N 35 E9U CE H7 SING N N 36 E9U CE H8 SING N N 37 E9U CZ H9 SING N N 38 E9U NH H10 SING N N 39 E9U NH H11 SING N N 40 E9U C2A H13 SING N N 41 E9U C2A H14 SING N N 42 E9U C2A H15 SING N N 43 E9U C4A H16 SING N N 44 E9U C5A H17 SING N N 45 E9U C5A H18 SING N N 46 E9U C6 H19 SING N N 47 E9U O1P H20 SING N N 48 E9U O3 H21 SING N N 49 E9U O3P H22 SING N N 50 E9U OX2 H23 SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor E9U InChI InChI 1.03 "InChI=1S/C15H22N3O9PS/c1-8-13(19)10(9(4-17-8)6-27-28(24,25)26)5-18-12(15(22)23)2-3-29-7-11(16)14(20)21/h4-5,11-12,19H,2-3,6-7,16H2,1H3,(H,20,21)(H,22,23)(H2,24,25,26)/b18-5+/t11-,12-/m0/s1" E9U InChIKey InChI 1.03 BNRWEPGYMATFEB-QIDXEYLZSA-N E9U SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=N[C@@H](CCSC[C@H](N)C(O)=O)C(O)=O)c1O" E9U SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=N[CH](CCSC[CH](N)C(O)=O)C(O)=O)c1O" E9U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)/C=N/[C@@H](CCSC[C@@H](C(=O)O)N)C(=O)O)O" E9U SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)C=NC(CCSCC(C(=O)O)N)C(=O)O)O" # _pdbx_chem_comp_identifier.comp_id E9U _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-4-[(2~{R})-2-azanyl-3-oxidanyl-3-oxidanylidene-propyl]sulfanyl-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]butanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site E9U "Create component" 2019-11-27 PDBJ E9U "Initial release" 2020-10-07 RCSB ##