data_E9W # _chem_comp.id E9W _chem_comp.name "azanylidene-[[(2~{R},3~{S},4~{R},5~{R})-5-[6-azanyl-8-[2-oxidanylidene-2-(prop-2-ynylamino)ethyl]sulfanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylimino]azanium" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H18 N9 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2018-03-12 _chem_comp.pdbx_modified_date 2019-03-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 420.426 _chem_comp.one_letter_code ? _chem_comp.three_letter_code E9W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6FXV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal E9W C2 C1 C 0 1 Y N N -18.644 13.115 41.894 3.910 3.633 -0.648 C2 E9W 1 E9W C4 C2 C 0 1 Y N N -16.481 13.745 41.695 2.302 2.023 -0.322 C4 E9W 2 E9W C5 C3 C 0 1 Y N N -16.115 12.535 41.089 1.309 3.011 -0.422 C5 E9W 3 E9W C6 C4 C 0 1 Y N N -17.072 11.550 40.913 1.712 4.336 -0.654 C6 E9W 4 E9W N9 N1 N 0 1 Y N N -15.381 14.486 41.782 1.642 0.836 -0.107 N9 E9W 5 E9W C8 C5 C 0 1 Y N N -14.376 13.749 41.266 0.301 1.112 -0.082 C8 E9W 6 E9W CAA C6 C 0 1 N N N -15.092 11.596 35.993 -8.223 1.530 0.286 CAA E9W 7 E9W CAB C7 C 0 1 N N N -14.052 11.681 36.508 -7.280 0.834 0.343 CAB E9W 8 E9W CAC C8 C 0 1 N N N -12.677 11.742 37.115 -6.098 -0.040 0.416 CAC E9W 9 E9W CAE C9 C 0 1 N N N -11.734 12.483 39.211 -3.675 0.170 0.262 CAE E9W 10 E9W CAG C10 C 0 1 N N N -11.829 12.654 40.727 -2.428 0.995 0.074 CAG E9W 11 E9W CAK C11 C 0 1 N N R -15.305 15.901 42.357 2.259 -0.482 0.062 CAK E9W 12 E9W CAM C12 C 0 1 N N R -14.300 18.108 42.204 1.824 -2.756 -0.000 CAM E9W 13 E9W CAN C13 C 0 1 N N N -12.892 17.755 42.520 0.598 -3.671 0.027 CAN E9W 14 E9W CAR C14 C 0 1 N N S -14.792 17.762 43.630 2.289 -2.459 1.439 CAR E9W 15 E9W CAT C15 C 0 1 N N R -14.578 16.236 43.657 2.220 -0.916 1.549 CAT E9W 16 E9W N1 N2 N 0 1 Y N N -18.370 11.870 41.306 3.011 4.595 -0.754 N1 E9W 17 E9W N3 N3 N 0 1 Y N N -17.723 14.019 42.070 3.577 2.376 -0.440 N3 E9W 18 E9W N6 N4 N 0 1 N N N -16.756 10.372 40.338 0.776 5.352 -0.763 N6 E9W 19 E9W N7 N5 N 0 1 Y N N -14.801 12.562 40.856 0.110 2.395 -0.267 N7 E9W 20 E9W NAD N6 N 0 1 N N N -12.762 11.915 38.588 -4.886 0.762 0.233 NAD E9W 21 E9W NAO N7 N 0 1 N N N -12.149 17.590 41.262 0.236 -4.043 -1.343 NAO E9W 22 E9W NAP N8 N 1 1 N N N -10.889 17.200 41.316 0.230 -5.125 -1.648 NAP E9W 23 E9W NAQ N9 N 0 1 N N N -9.614 16.812 41.378 0.224 -6.207 -1.953 NAQ E9W 24 E9W OAF O1 O 0 1 N N N -10.750 12.940 38.614 -3.589 -1.027 0.439 OAF E9W 25 E9W OAL O2 O 0 1 N N N -14.831 16.926 41.407 1.481 -1.498 -0.607 OAL E9W 26 E9W OAS O3 O 0 1 N N N -16.142 18.073 43.937 3.628 -2.915 1.635 OAS E9W 27 E9W OAU O4 O 0 1 N N N -15.398 15.708 44.719 3.349 -0.405 2.260 OAU E9W 28 E9W SAH S1 S 0 1 N N N -12.674 14.244 41.157 -0.974 -0.079 0.163 SAH E9W 29 E9W H1 H1 H 0 1 N N N -19.654 13.331 42.211 4.956 3.886 -0.740 H1 E9W 30 E9W H2 H2 H 0 1 N N N -16.039 11.519 35.524 -9.066 2.154 0.234 H2 E9W 31 E9W H3 H3 H 0 1 N N N -12.141 10.808 36.891 -6.067 -0.529 1.390 H3 E9W 32 E9W H4 H4 H 0 1 N N N -12.128 12.592 36.682 -6.155 -0.795 -0.368 H4 E9W 33 E9W H5 H5 H 0 1 N N N -12.402 11.815 41.149 -2.460 1.484 -0.900 H5 E9W 34 E9W H6 H6 H 0 1 N N N -10.815 12.657 41.154 -2.371 1.750 0.858 H6 E9W 35 E9W H7 H7 H 0 1 N N N -16.353 16.168 42.557 3.284 -0.475 -0.309 H7 E9W 36 E9W H8 H8 H 0 1 N N N -14.516 19.119 41.828 2.629 -3.232 -0.559 H8 E9W 37 E9W H9 H9 H 0 1 N N N -12.866 16.815 43.090 0.828 -4.569 0.599 H9 E9W 38 E9W H10 H10 H 0 1 N N N -12.435 18.558 43.116 -0.236 -3.147 0.494 H10 E9W 39 E9W H11 H11 H 0 1 N N N -14.114 18.228 44.360 1.616 -2.924 2.160 H11 E9W 40 E9W H12 H12 H 0 1 N N N -13.521 15.933 43.674 1.289 -0.601 2.022 H12 E9W 41 E9W H13 H13 H 0 1 N N N -17.579 9.810 40.254 -0.169 5.153 -0.678 H13 E9W 42 E9W H14 H14 H 0 1 N N N -16.371 10.537 39.430 1.067 6.264 -0.924 H14 E9W 43 E9W H15 H15 H 0 1 N N N -13.569 11.613 39.096 -4.954 1.719 0.092 H15 E9W 44 E9W H17 H17 H 0 1 N N N -16.330 17.818 44.833 3.740 -3.869 1.520 H17 E9W 45 E9W H18 H18 H 0 1 N N N -14.988 15.890 45.557 3.369 -0.650 3.195 H18 E9W 46 E9W H16 H16 H 0 1 N N N -9.112 17.289 42.099 1.028 -6.613 -2.315 H16 E9W 47 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal E9W CAA CAB TRIP N N 1 E9W CAB CAC SING N N 2 E9W CAC NAD SING N N 3 E9W NAD CAE SING N N 4 E9W OAF CAE DOUB N N 5 E9W CAE CAG SING N N 6 E9W N6 C6 SING N N 7 E9W CAG SAH SING N N 8 E9W N7 C5 SING Y N 9 E9W N7 C8 DOUB Y N 10 E9W C6 C5 DOUB Y N 11 E9W C6 N1 SING Y N 12 E9W C5 C4 SING Y N 13 E9W SAH C8 SING N N 14 E9W NAO NAP DOUB N N 15 E9W NAO CAN SING N N 16 E9W C8 N9 SING Y N 17 E9W N1 C2 DOUB Y N 18 E9W NAP NAQ DOUB N N 19 E9W OAL CAM SING N N 20 E9W OAL CAK SING N N 21 E9W C4 N9 SING Y N 22 E9W C4 N3 DOUB Y N 23 E9W N9 CAK SING N N 24 E9W C2 N3 SING Y N 25 E9W CAM CAN SING N N 26 E9W CAM CAR SING N N 27 E9W CAK CAT SING N N 28 E9W CAR CAT SING N N 29 E9W CAR OAS SING N N 30 E9W CAT OAU SING N N 31 E9W C2 H1 SING N N 32 E9W CAA H2 SING N N 33 E9W CAC H3 SING N N 34 E9W CAC H4 SING N N 35 E9W CAG H5 SING N N 36 E9W CAG H6 SING N N 37 E9W CAK H7 SING N N 38 E9W CAM H8 SING N N 39 E9W CAN H9 SING N N 40 E9W CAN H10 SING N N 41 E9W CAR H11 SING N N 42 E9W CAT H12 SING N N 43 E9W N6 H13 SING N N 44 E9W N6 H14 SING N N 45 E9W NAD H15 SING N N 46 E9W OAS H17 SING N N 47 E9W OAU H18 SING N N 48 E9W NAQ H16 SING N N 49 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor E9W InChI InChI 1.03 "InChI=1S/C15H17N9O4S/c1-2-3-18-8(25)5-29-15-22-9-12(16)19-6-20-13(9)24(15)14-11(27)10(26)7(28-14)4-21-23-17/h1,6-7,10-11,14,17,26-27H,3-5H2,(H2-,16,18,19,20,25)/p+1/t7-,10-,11-,14-/m1/s1" E9W InChIKey InChI 1.03 JLTMRFGYLXJIRU-FRJWGUMJSA-O E9W SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n([C@@H]3O[C@H](CN=[N+]=N)[C@@H](O)[C@H]3O)c(SCC(=O)NCC#C)nc12" E9W SMILES CACTVS 3.385 "Nc1ncnc2n([CH]3O[CH](CN=[N+]=N)[CH](O)[CH]3O)c(SCC(=O)NCC#C)nc12" E9W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C#CCNC(=O)CSc1nc2c(ncnc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)CN=[N+]=N)O)O)N" E9W SMILES "OpenEye OEToolkits" 2.0.6 "C#CCNC(=O)CSc1nc2c(ncnc2n1C3C(C(C(O3)CN=[N+]=N)O)O)N" # _pdbx_chem_comp_identifier.comp_id E9W _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "azanylidene-[[(2~{R},3~{S},4~{R},5~{R})-5-[6-azanyl-8-[2-oxidanylidene-2-(prop-2-ynylamino)ethyl]sulfanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylimino]azanium" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site E9W "Create component" 2018-03-12 EBI E9W "Initial release" 2019-03-20 RCSB ##