data_EA5 # _chem_comp.id EA5 _chem_comp.name "(4S)-4-AMINO-5-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]PENTANOIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H22 N3 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-07-18 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 363.303 _chem_comp.one_letter_code ? _chem_comp.three_letter_code EA5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 2HP1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal EA5 P P P 0 1 N N N 6.118 18.549 -29.142 3.042 -3.049 0.061 P EA5 1 EA5 OP1 OP1 O 0 1 N N N 5.018 18.947 -28.229 1.760 -3.384 0.719 OP1 EA5 2 EA5 OP2 OP2 O 0 1 N N N 7.236 17.739 -28.399 2.940 -3.378 -1.512 OP2 EA5 3 EA5 OP3 OP3 O 0 1 N N N 7.035 19.521 -29.721 4.226 -3.920 0.716 OP3 EA5 4 EA5 OP4 OP4 O 0 1 N N N 5.513 17.657 -30.307 3.354 -1.482 0.261 OP4 EA5 5 EA5 C5A C5A C 0 1 N N N 6.332 17.071 -31.365 2.219 -0.768 -0.232 C5A EA5 6 EA5 C5 C5 C 0 1 Y N N 5.493 16.962 -32.643 2.449 0.713 -0.072 C5 EA5 7 EA5 C6 C6 C 0 1 Y N N 4.973 15.741 -32.968 3.625 1.182 0.484 C6 EA5 8 EA5 N1 N1 N 0 1 Y N N 4.219 15.615 -34.114 3.836 2.476 0.628 N1 EA5 9 EA5 C2 C2 C 0 1 Y N N 3.967 16.698 -34.954 2.944 3.371 0.253 C2 EA5 10 EA5 C2A C2A C 0 1 N N N 3.115 16.471 -36.215 3.235 4.838 0.441 C2A EA5 11 EA5 C3 C3 C 0 1 Y N N 4.489 17.948 -34.638 1.738 2.977 -0.307 C3 EA5 12 EA5 O3 O3 O 0 1 N N N 4.249 19.055 -35.471 0.821 3.904 -0.691 O3 EA5 13 EA5 C4 C4 C 0 1 Y N N 5.262 18.075 -33.465 1.484 1.620 -0.480 C4 EA5 14 EA5 C4A C4A C 0 1 N N N 5.858 19.419 -33.077 0.190 1.148 -1.090 C4A EA5 15 EA5 N4A N4A N 0 1 N N N 5.692 20.550 -33.815 -0.807 0.948 -0.029 N4A EA5 16 EA5 N4 N4 N 0 1 N N N 5.872 23.511 -35.150 -3.304 1.484 1.158 N4 EA5 17 EA5 CA CA C 0 1 N N S 6.884 22.606 -34.534 -3.124 0.261 0.365 CA EA5 18 EA5 C C C 0 1 N N N 6.301 21.794 -33.346 -2.038 0.490 -0.688 C EA5 19 EA5 CB CB C 0 1 N N N 8.162 23.422 -34.143 -4.440 -0.094 -0.330 CB EA5 20 EA5 CG CG C 0 1 N N N 8.379 23.792 -32.654 -5.494 -0.445 0.723 CG EA5 21 EA5 CD CD C 0 1 N N N 9.437 22.946 -31.934 -6.790 -0.795 0.039 CD EA5 22 EA5 OE1 OE1 O 0 1 N N N 9.711 21.791 -32.345 -7.863 -1.139 0.769 OE1 EA5 23 EA5 OE2 OE2 O 0 1 N N N 9.991 23.436 -30.938 -6.864 -0.767 -1.167 OE2 EA5 24 EA5 HOP1 HOP1 H 0 0 N N N 5.355 19.032 -27.345 ? ? ? HOP1 EA5 25 EA5 HOP2 HOP2 H 0 0 N N N 7.958 17.575 -28.995 3.794 -3.146 -1.902 HOP2 EA5 26 EA5 H5A1 1H5A H 0 0 N N N 6.674 16.071 -31.059 1.333 -1.061 0.331 H5A1 EA5 27 EA5 H5A2 2H5A H 0 0 N N N 7.208 17.710 -31.551 2.073 -1.001 -1.286 H5A2 EA5 28 EA5 H6 H6 H 0 1 N N N 5.151 14.885 -32.334 4.381 0.480 0.803 H6 EA5 29 EA5 H2A1 1H2A H 0 0 N N N 3.416 15.528 -36.696 3.733 5.226 -0.448 H2A1 EA5 30 EA5 H2A2 2H2A H 0 0 N N N 3.268 17.305 -36.915 2.301 5.376 0.599 H2A2 EA5 31 EA5 H2A3 3H2A H 0 0 N N N 2.053 16.417 -35.935 3.882 4.972 1.308 H2A3 EA5 32 EA5 HO3 HO3 H 0 1 N N N 4.195 19.843 -34.943 0.245 4.060 0.070 HO3 EA5 33 EA5 H4A1 1H4A H 0 0 N N N 6.936 19.230 -33.191 -0.174 1.896 -1.794 H4A1 EA5 34 EA5 H4A2 2H4A H 0 0 N N N 5.424 19.652 -32.094 0.357 0.207 -1.614 H4A2 EA5 35 EA5 HN4A HN4A H 0 0 N N N 6.087 20.362 -34.714 -0.478 0.179 0.536 HN4A EA5 36 EA5 HN41 1HN4 H 0 0 N N N 6.314 24.362 -35.433 -2.393 1.737 1.511 HN41 EA5 37 EA5 HN42 2HN4 H 0 0 N N N 5.155 23.714 -34.483 -3.577 2.211 0.513 HN42 EA5 38 EA5 HA HA H 0 1 N N N 7.180 21.855 -35.281 -2.827 -0.557 1.021 HA EA5 39 EA5 H1 1H H 0 1 N N N 7.118 21.547 -32.653 -2.373 1.247 -1.397 H1 EA5 40 EA5 H2 2H H 0 1 N N N 5.535 22.400 -32.840 -1.842 -0.442 -1.217 H2 EA5 41 EA5 HB1 1HB H 0 1 N N N 8.035 24.390 -34.650 -4.783 0.758 -0.917 HB1 EA5 42 EA5 HB2 2HB H 0 1 N N N 9.027 22.812 -34.443 -4.285 -0.950 -0.987 HB2 EA5 43 EA5 HG1 1HG H 0 1 N N N 7.424 23.606 -32.141 -5.151 -1.297 1.310 HG1 EA5 44 EA5 HG2 2HG H 0 1 N N N 8.703 24.842 -32.612 -5.650 0.410 1.380 HG2 EA5 45 EA5 HOE2 HOE2 H 0 0 N N N 10.612 22.812 -30.581 ? ? ? HOE2 EA5 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EA5 P OP1 SING N N 1 EA5 P OP2 SING N N 2 EA5 P OP3 DOUB N N 3 EA5 P OP4 SING N N 4 EA5 OP1 HOP1 SING N N 5 EA5 OP2 HOP2 SING N N 6 EA5 OP4 C5A SING N N 7 EA5 C5A C5 SING N N 8 EA5 C5A H5A1 SING N N 9 EA5 C5A H5A2 SING N N 10 EA5 C5 C6 SING Y N 11 EA5 C5 C4 DOUB Y N 12 EA5 C6 N1 DOUB Y N 13 EA5 C6 H6 SING N N 14 EA5 N1 C2 SING Y N 15 EA5 C2 C2A SING N N 16 EA5 C2 C3 DOUB Y N 17 EA5 C2A H2A1 SING N N 18 EA5 C2A H2A2 SING N N 19 EA5 C2A H2A3 SING N N 20 EA5 C3 O3 SING N N 21 EA5 C3 C4 SING Y N 22 EA5 O3 HO3 SING N N 23 EA5 C4 C4A SING N N 24 EA5 C4A N4A SING N N 25 EA5 C4A H4A1 SING N N 26 EA5 C4A H4A2 SING N N 27 EA5 N4A C SING N N 28 EA5 N4A HN4A SING N N 29 EA5 N4 CA SING N N 30 EA5 N4 HN41 SING N N 31 EA5 N4 HN42 SING N N 32 EA5 CA C SING N N 33 EA5 CA CB SING N N 34 EA5 CA HA SING N N 35 EA5 C H1 SING N N 36 EA5 C H2 SING N N 37 EA5 CB CG SING N N 38 EA5 CB HB1 SING N N 39 EA5 CB HB2 SING N N 40 EA5 CG CD SING N N 41 EA5 CG HG1 SING N N 42 EA5 CG HG2 SING N N 43 EA5 CD OE1 DOUB N N 44 EA5 CD OE2 SING N N 45 EA5 OE2 HOE2 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor EA5 SMILES ACDLabs 10.04 "O=C(O)CCC(N)CNCc1c(cnc(c1O)C)COP(=O)(O)O" EA5 SMILES_CANONICAL CACTVS 3.341 "Cc1ncc(CO[P](O)(O)=O)c(CNC[C@@H](N)CCC(O)=O)c1O" EA5 SMILES CACTVS 3.341 "Cc1ncc(CO[P](O)(O)=O)c(CNC[CH](N)CCC(O)=O)c1O" EA5 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC[C@H](CCC(=O)O)N)O" EA5 SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CNCC(CCC(=O)O)N)O" EA5 InChI InChI 1.03 "InChI=1S/C13H22N3O7P/c1-8-13(19)11(6-15-5-10(14)2-3-12(17)18)9(4-16-8)7-23-24(20,21)22/h4,10,15,19H,2-3,5-7,14H2,1H3,(H,17,18)(H2,20,21,22)/t10-/m0/s1" EA5 InChIKey InChI 1.03 DSCJVPXIMLLBAH-JTQLQIEISA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier EA5 "SYSTEMATIC NAME" ACDLabs 10.04 "(4S)-4-amino-5-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]pentanoic acid" EA5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(4S)-4-amino-5-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site EA5 "Create component" 2006-07-18 RCSB EA5 "Modify descriptor" 2011-06-04 RCSB #