data_EB1 # _chem_comp.id EB1 _chem_comp.name SEOCALCITOL _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H46 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;5-{2-[1-(6-ETHYL-6-HYDROXY-1-METHYL-OCTA-2,4-DIENYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLO HEXANE-1,3-DIOL; 22-24-DIENE-24A,26A,27A,TRIHOMO-1ALPHA,25-DIHYDROXYVITAMIN D3 ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-01-14 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 454.684 _chem_comp.one_letter_code ? _chem_comp.three_letter_code EB1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "not provided" _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 1S0Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal EB1 O2 O2 O 0 1 N N N 16.991 18.104 34.546 ? ? ? O2 EB1 1 EB1 C1 C1 C 0 1 N N S 14.173 18.034 35.554 ? ? ? C1 EB1 2 EB1 C2 C2 C 0 1 N N N 14.886 16.918 34.732 ? ? ? C2 EB1 3 EB1 C3 C3 C 0 1 N N R 15.925 17.595 33.762 ? ? ? C3 EB1 4 EB1 C4 C4 C 0 1 N N N 15.346 18.789 32.931 ? ? ? C4 EB1 5 EB1 C5 C5 C 0 1 N N N 14.531 19.787 33.758 ? ? ? C5 EB1 6 EB1 C6 C6 C 0 1 N N N 14.817 21.095 33.536 ? ? ? C6 EB1 7 EB1 C7 C7 C 0 1 N N N 14.210 22.263 34.184 ? ? ? C7 EB1 8 EB1 C8 C8 C 0 1 N N N 14.002 23.479 33.650 ? ? ? C8 EB1 9 EB1 C9 C9 C 0 1 N N N 14.353 23.954 32.196 ? ? ? C9 EB1 10 EB1 C10 C10 C 0 1 N N N 13.518 19.147 34.730 ? ? ? C10 EB1 11 EB1 C11 C11 C 0 1 N N N 13.157 24.619 31.457 ? ? ? C11 EB1 12 EB1 C12 C12 C 0 1 N N N 12.325 25.594 32.343 ? ? ? C12 EB1 13 EB1 C13 C13 C 0 1 N N R 12.031 25.092 33.794 ? ? ? C13 EB1 14 EB1 C14 C14 C 0 1 N N S 13.344 24.576 34.497 ? ? ? C14 EB1 15 EB1 C15 C15 C 0 1 N N N 12.902 24.337 36.005 ? ? ? C15 EB1 16 EB1 C16 C16 C 0 1 N N N 11.791 25.372 36.280 ? ? ? C16 EB1 17 EB1 C17 C17 C 0 1 N N R 11.682 26.139 34.905 ? ? ? C17 EB1 18 EB1 C18 C18 C 0 1 N N N 10.963 23.933 33.622 ? ? ? C18 EB1 19 EB1 C19 C19 C 0 1 N N N 12.190 19.479 34.861 ? ? ? C19 EB1 20 EB1 C20 C20 C 0 1 N N R 10.361 27.000 34.662 ? ? ? C20 EB1 21 EB1 C21 C21 C 0 1 N N N 10.305 28.432 35.258 ? ? ? C21 EB1 22 EB1 C22 C22 C 0 1 N N N 9.106 26.335 35.066 ? ? ? C22 EB1 23 EB1 C23 C23 C 0 1 N N N 8.246 26.257 34.058 ? ? ? C23 EB1 24 EB1 C24 C24 C 0 1 N N N 6.989 25.629 34.310 ? ? ? C24 EB1 25 EB1 C25 C25 C 0 1 N N N 5.914 25.999 33.643 ? ? ? C25 EB1 26 EB1 C27 C27 C 0 1 N N N 4.496 25.845 34.082 ? ? ? C27 EB1 27 EB1 O1 O1 O 0 1 N N N 13.239 17.447 36.416 ? ? ? O1 EB1 28 EB1 C26 C26 C 0 1 N N N 3.969 24.598 34.875 ? ? ? C26 EB1 29 EB1 C28 C28 C 0 1 N N N 3.762 25.912 32.766 ? ? ? C28 EB1 30 EB1 O3 O3 O 0 1 N N N 4.270 26.980 34.916 ? ? ? O3 EB1 31 EB1 C30 C30 C 0 1 N N N 3.877 24.570 31.882 ? ? ? C30 EB1 32 EB1 C31 C31 C 0 1 N N N 4.497 24.464 36.288 ? ? ? C31 EB1 33 EB1 HO2 HO2 H 0 1 N N N 17.617 18.512 33.960 ? ? ? HO2 EB1 34 EB1 H1 H1 H 0 1 N N N 14.980 18.551 36.123 ? ? ? H1 EB1 35 EB1 H21 1H2 H 0 1 N N N 15.351 16.140 35.381 ? ? ? H21 EB1 36 EB1 H22A 2H2 H 0 0 N N N 14.166 16.257 34.193 ? ? ? H22A EB1 37 EB1 H3 H3 H 0 1 N N N 16.240 16.809 33.036 ? ? ? H3 EB1 38 EB1 H41 1H4 H 0 1 N N N 16.160 19.312 32.378 ? ? ? H41 EB1 39 EB1 H42 2H4 H 0 1 N N N 14.745 18.411 32.070 ? ? ? H42 EB1 40 EB1 H6 H6 H 0 1 N N N 15.602 21.218 32.771 ? ? ? H6 EB1 41 EB1 H7 H7 H 0 1 N N N 13.857 22.220 35.228 ? ? ? H7 EB1 42 EB1 H91 1H9 H 0 1 N N N 15.238 24.631 32.204 ? ? ? H91 EB1 43 EB1 H92 2H9 H 0 1 N N N 14.770 23.112 31.595 ? ? ? H92 EB1 44 EB1 H111 1H11 H 0 0 N N N 13.506 25.133 30.531 ? ? ? H111 EB1 45 EB1 H112 2H11 H 0 0 N N N 12.497 23.842 31.003 ? ? ? H112 EB1 46 EB1 H121 1H12 H 0 0 N N N 12.815 26.594 32.376 ? ? ? H121 EB1 47 EB1 H122 2H12 H 0 0 N N N 11.371 25.859 31.829 ? ? ? H122 EB1 48 EB1 H14 H14 H 0 1 N N N 14.218 25.265 34.560 ? ? ? H14 EB1 49 EB1 H151 1H15 H 0 0 N N N 12.598 23.286 36.221 ? ? ? H151 EB1 50 EB1 H152 2H15 H 0 0 N N N 13.746 24.382 36.731 ? ? ? H152 EB1 51 EB1 H161 1H16 H 0 0 N N N 10.832 24.940 36.651 ? ? ? H161 EB1 52 EB1 H162 2H16 H 0 0 N N N 11.969 26.024 37.166 ? ? ? H162 EB1 53 EB1 H17 H17 H 0 1 N N N 12.414 26.979 34.892 ? ? ? H17 EB1 54 EB1 H181 1H18 H 0 0 N N N 10.753 23.575 34.656 ? ? ? H181 EB1 55 EB1 H182 2H18 H 0 0 N N N 10.051 24.239 33.057 ? ? ? H182 EB1 56 EB1 H183 3H18 H 0 0 N N N 11.282 23.126 32.921 ? ? ? H183 EB1 57 EB1 H191 1H19 H 0 0 N N N 11.465 19.021 35.555 ? ? ? H191 EB1 58 EB1 H192 2H19 H 0 0 N N N 11.718 20.280 34.267 ? ? ? H192 EB1 59 EB1 H20 H20 H 0 1 N N N 10.440 27.092 33.553 ? ? ? H20 EB1 60 EB1 H211 1H21 H 0 0 N N N 9.381 29.033 35.088 ? ? ? H211 EB1 61 EB1 H212 2H21 H 0 0 N N N 10.511 28.380 36.352 ? ? ? H212 EB1 62 EB1 H213 3H21 H 0 0 N N N 11.189 29.010 34.902 ? ? ? H213 EB1 63 EB1 H22 H22 H 0 1 N N N 8.830 25.925 36.052 ? ? ? H22 EB1 64 EB1 H23 H23 H 0 1 N N N 8.552 26.680 33.086 ? ? ? H23 EB1 65 EB1 H24 H24 H 0 1 N N N 6.842 24.824 35.050 ? ? ? H24 EB1 66 EB1 H25 H25 H 0 1 N N N 6.211 26.453 32.683 ? ? ? H25 EB1 67 EB1 HO1 HO1 H 0 1 N N N 12.804 18.127 36.917 ? ? ? HO1 EB1 68 EB1 H261 1H26 H 0 0 N N N 2.854 24.588 34.879 ? ? ? H261 EB1 69 EB1 H262 2H26 H 0 0 N N N 4.169 23.664 34.299 ? ? ? H262 EB1 70 EB1 H281 1H28 H 0 0 N N N 2.692 26.183 32.927 ? ? ? H281 EB1 71 EB1 H282 2H28 H 0 0 N N N 4.094 26.798 32.177 ? ? ? H282 EB1 72 EB1 HO3 HO3 H 0 1 N N N 3.367 26.882 35.195 ? ? ? HO3 EB1 73 EB1 H301 1H30 H 0 0 N N N 3.334 24.619 30.909 ? ? ? H301 EB1 74 EB1 H302 2H30 H 0 0 N N N 4.946 24.298 31.720 ? ? ? H302 EB1 75 EB1 H303 3H30 H 0 0 N N N 3.544 23.683 32.471 ? ? ? H303 EB1 76 EB1 H311 1H31 H 0 0 N N N 4.122 23.577 36.851 ? ? ? H311 EB1 77 EB1 H312 2H31 H 0 0 N N N 5.612 24.473 36.283 ? ? ? H312 EB1 78 EB1 H313 3H31 H 0 0 N N N 4.296 25.397 36.863 ? ? ? H313 EB1 79 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EB1 O2 C3 SING N N 1 EB1 O2 HO2 SING N N 2 EB1 C1 C2 SING N N 3 EB1 C1 C10 SING N N 4 EB1 C1 O1 SING N N 5 EB1 C1 H1 SING N N 6 EB1 C2 C3 SING N N 7 EB1 C2 H21 SING N N 8 EB1 C2 H22A SING N N 9 EB1 C3 C4 SING N N 10 EB1 C3 H3 SING N N 11 EB1 C4 C5 SING N N 12 EB1 C4 H41 SING N N 13 EB1 C4 H42 SING N N 14 EB1 C5 C6 DOUB N Z 15 EB1 C5 C10 SING N N 16 EB1 C6 C7 SING N N 17 EB1 C6 H6 SING N N 18 EB1 C7 C8 DOUB N E 19 EB1 C7 H7 SING N N 20 EB1 C8 C9 SING N N 21 EB1 C8 C14 SING N N 22 EB1 C9 C11 SING N N 23 EB1 C9 H91 SING N N 24 EB1 C9 H92 SING N N 25 EB1 C10 C19 DOUB N N 26 EB1 C11 C12 SING N N 27 EB1 C11 H111 SING N N 28 EB1 C11 H112 SING N N 29 EB1 C12 C13 SING N N 30 EB1 C12 H121 SING N N 31 EB1 C12 H122 SING N N 32 EB1 C13 C14 SING N N 33 EB1 C13 C17 SING N N 34 EB1 C13 C18 SING N N 35 EB1 C14 C15 SING N N 36 EB1 C14 H14 SING N N 37 EB1 C15 C16 SING N N 38 EB1 C15 H151 SING N N 39 EB1 C15 H152 SING N N 40 EB1 C16 C17 SING N N 41 EB1 C16 H161 SING N N 42 EB1 C16 H162 SING N N 43 EB1 C17 C20 SING N N 44 EB1 C17 H17 SING N N 45 EB1 C18 H181 SING N N 46 EB1 C18 H182 SING N N 47 EB1 C18 H183 SING N N 48 EB1 C19 H191 SING N N 49 EB1 C19 H192 SING N N 50 EB1 C20 C21 SING N N 51 EB1 C20 C22 SING N N 52 EB1 C20 H20 SING N N 53 EB1 C21 H211 SING N N 54 EB1 C21 H212 SING N N 55 EB1 C21 H213 SING N N 56 EB1 C22 C23 DOUB N E 57 EB1 C22 H22 SING N N 58 EB1 C23 C24 SING N N 59 EB1 C23 H23 SING N N 60 EB1 C24 C25 DOUB N E 61 EB1 C24 H24 SING N N 62 EB1 C25 C27 SING N N 63 EB1 C25 H25 SING N N 64 EB1 C27 C26 SING N N 65 EB1 C27 C28 SING N N 66 EB1 C27 O3 SING N N 67 EB1 O1 HO1 SING N N 68 EB1 C26 C31 SING N N 69 EB1 C26 H261 SING N N 70 EB1 C26 H262 SING N N 71 EB1 C28 C30 SING N N 72 EB1 C28 H281 SING N N 73 EB1 C28 H282 SING N N 74 EB1 O3 HO3 SING N N 75 EB1 C30 H301 SING N N 76 EB1 C30 H302 SING N N 77 EB1 C30 H303 SING N N 78 EB1 C31 H311 SING N N 79 EB1 C31 H312 SING N N 80 EB1 C31 H313 SING N N 81 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor EB1 SMILES ACDLabs 10.04 "OC3C(=C)/C(=C\C=C1/CCCC2(C)C(C(\C=C\C=C\C(O)(CC)CC)C)CCC12)CC(O)C3" EB1 SMILES_CANONICAL CACTVS 3.341 "CCC(O)(CC)/C=C/C=C/[C@@H](C)[C@H]1CC[C@H]2C(/CCC[C@]12C)=C/C=C3/C[C@@H](O)C[C@H](O)C3=C" EB1 SMILES CACTVS 3.341 "CCC(O)(CC)C=CC=C[CH](C)[CH]1CC[CH]2C(CCC[C]12C)=CC=C3C[CH](O)C[CH](O)C3=C" EB1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCC(CC)(C=C\C=C\[C@@H](C)[C@H]1CC[C@@H]\2[C@@]1(CCC/C2=C\C=C/3\C[C@H](C[C@@H](C3=C)O)O)C)O" EB1 SMILES "OpenEye OEToolkits" 1.5.0 "CCC(CC)(C=CC=CC(C)C1CCC2C1(CCCC2=CC=C3CC(CC(C3=C)O)O)C)O" EB1 InChI InChI 1.03 "InChI=1S/C30H46O3/c1-6-30(33,7-2)18-9-8-11-21(3)26-15-16-27-23(12-10-17-29(26,27)5)13-14-24-19-25(31)20-28(32)22(24)4/h8-9,11,13-14,18,21,25-28,31-33H,4,6-7,10,12,15-17,19-20H2,1-3,5H3/b11-8+,18-9+,23-13+,24-14-/t21-,25-,26-,27+,28+,29-/m1/s1" EB1 InChIKey InChI 1.03 LVLLALCJVJNGQQ-SEODYNFXSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier EB1 "SYSTEMATIC NAME" ACDLabs 10.04 "(1R,3S,5Z)-5-[(2E)-2-{(1R,3aS,7aR)-1-[(1R,2E,4E)-6-ethyl-6-hydroxy-1-methylocta-2,4-dien-1-yl]-7a-methyloctahydro-4H-inden-4-ylidene}ethylidene]-4-methylidenecyclohexane-1,3-diol (non-preferred name)" EB1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(1R,3S,5Z)-5-[(2E)-2-[(1R,3aS,7aR)-1-[(2R,3E)-7-ethyl-7-hydroxy-nona-3,5-dien-2-yl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site EB1 "Create component" 2004-01-14 RCSB EB1 "Modify descriptor" 2011-06-04 RCSB EB1 "Modify synonyms" 2020-06-05 PDBE # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 EB1 "5-{2-[1-(6-ETHYL-6-HYDROXY-1-METHYL-OCTA-2,4-DIENYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL" ? ? 2 EB1 "22-24-DIENE-24A,26A,27A,TRIHOMO-1ALPHA,25-DIHYDROXYVITAMIN D3" ? ? ##