data_EBN # _chem_comp.id EBN _chem_comp.name "(S)-6-amino-N-((S)-6-amino-1-(((1r,4S)-4-guanidinocyclohexyl)methylamino)-1-oxohexan-2-yl)-2-(2-(3,4-dichlorophenyl)acetamido)hexanamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H46 Cl2 N8 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "3,4-dichlorophenylacetyl-Lys-Lys-GCMA" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-10-26 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 613.623 _chem_comp.one_letter_code ? _chem_comp.three_letter_code EBN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list "05R LYS LYS 05T" _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal EBN CBE CBE C 0 1 N N N 48.455 -27.474 -22.856 3.904 -0.181 0.816 CBE 05R 1 EBN OBF OBF O 0 1 N N N 49.453 -27.275 -23.553 4.267 -0.548 -0.281 OBF 05R 2 EBN CBG CBG C 0 1 N N N 47.949 -28.891 -22.544 4.920 0.259 1.838 CBG 05R 3 EBN CBH CBH C 0 1 Y N N 48.959 -29.724 -22.124 6.304 0.143 1.252 CBH 05R 4 EBN CBI CBI C 0 1 Y N N 49.600 -30.525 -23.056 7.013 -1.036 1.386 CBI 05R 5 EBN CBJ CBJ C 0 1 Y N N 50.611 -31.362 -22.645 8.283 -1.144 0.850 CBJ 05R 6 EBN CBK CBK C 0 1 Y N N 50.949 -31.380 -21.301 8.844 -0.073 0.178 CBK 05R 7 EBN CLL CLL CL 0 0 N N N 52.181 -32.411 -20.779 10.438 -0.208 -0.496 CLL 05R 8 EBN CBM CBM C 0 1 Y N N 50.302 -30.580 -20.364 8.133 1.108 0.044 CBM 05R 9 EBN CLN CLN CL 0 0 N N N 50.778 -30.636 -18.642 8.835 2.454 -0.798 CLN 05R 10 EBN CBO CBO C 0 1 Y N N 49.288 -29.741 -20.779 6.861 1.213 0.577 CBO 05R 11 EBN NBD NBD N 0 1 N N N 47.689 -26.515 -22.317 2.591 -0.162 1.120 N LYS 12 EBN CAX CAX C 0 1 N N S 47.955 -25.090 -22.534 1.603 -0.590 0.127 CA LYS 13 EBN CAV CAV C 0 1 N N N 48.670 -24.453 -21.302 0.278 0.066 0.421 C LYS 14 EBN OAW OAW O 0 1 N N N 49.326 -23.407 -21.435 0.170 0.816 1.368 O LYS 15 EBN CAY CAY C 0 1 N N N 46.644 -24.381 -22.975 1.444 -2.110 0.188 CB LYS 16 EBN CAZ CAZ C 0 1 N N N 45.344 -25.031 -22.437 2.756 -2.777 -0.233 CG LYS 17 EBN CBA CBA C 0 1 N N N 44.468 -25.593 -23.587 2.597 -4.297 -0.172 CD LYS 18 EBN CBB CBB C 0 1 N N N 43.906 -24.488 -24.514 3.908 -4.964 -0.592 CE LYS 19 EBN NBC NBC N 0 1 N N N 42.575 -24.026 -24.085 3.756 -6.424 -0.534 NZ LYS 20 EBN N N N 0 1 N N N 48.535 -25.148 -20.140 -0.787 -0.183 -0.367 N LYS 21 EBN CA CA C 0 1 N N S 49.205 -24.763 -18.879 -2.075 0.454 -0.081 CA LYS 22 EBN C C C 0 1 N N N 50.426 -25.692 -18.736 -3.189 -0.388 -0.647 C LYS 23 EBN O O O 0 1 N N N 50.308 -26.853 -18.342 -2.932 -1.418 -1.232 O LYS 24 EBN CB CB C 0 1 N N N 48.243 -24.806 -17.699 -2.110 1.844 -0.720 CB LYS 25 EBN CG CG C 0 1 N N N 47.249 -23.670 -17.933 -1.060 2.737 -0.057 CG LYS 26 EBN CD CD C 0 1 N N N 46.388 -23.462 -16.699 -1.095 4.127 -0.697 CD LYS 27 EBN CE CE C 0 1 N N N 45.802 -22.060 -16.731 -0.045 5.021 -0.034 CE LYS 28 EBN NZ NZ N 0 1 N N N 45.760 -21.486 -15.373 -0.079 6.354 -0.648 NZ LYS 29 EBN CAA CAA C 0 1 N N N 52.391 -27.772 -22.455 -8.478 0.535 1.056 CAA 05T 30 EBN CAB CAB C 0 1 N N N 53.654 -27.364 -23.196 -9.599 -0.253 0.375 CAB 05T 31 EBN NAC NAC N 0 1 N N N 53.651 -27.687 -24.647 -10.887 0.384 0.661 NAC 05T 32 EBN CAD CAD C 0 1 N N N 52.661 -28.149 -25.467 -12.044 -0.357 0.623 CAD 05T 33 EBN NAE NAE N 0 1 N N N 51.392 -28.318 -25.054 -13.252 0.241 0.892 NAE 05T 34 EBN NAF NAF N 0 1 N N N 52.960 -28.453 -26.739 -11.995 -1.627 0.333 NAF 05T 35 EBN CAG CAG C 0 1 N N N 53.924 -25.902 -22.952 -9.364 -0.271 -1.137 CAG 05T 36 EBN CAH CAH C 0 1 N N N 54.111 -25.692 -21.437 -8.019 -0.936 -1.436 CAH 05T 37 EBN CAI CAI C 0 1 N N N 52.848 -26.093 -20.745 -6.898 -0.149 -0.755 CAI 05T 38 EBN CAJ CAJ C 0 1 N N N 52.614 -27.553 -20.965 -7.133 -0.130 0.757 CAJ 05T 39 EBN CAK CAK C 0 1 N N N 52.876 -25.800 -19.264 -5.553 -0.814 -1.054 CAK 05T 40 EBN NAL NAL N 0 1 N N N 51.584 -25.128 -19.148 -4.470 0.005 -0.503 NAL 05T 41 EBN HBG HBG H 0 1 N N N 47.189 -28.829 -21.751 4.730 1.296 2.116 HBG 05R 42 EBN HBGA HBGA H 0 0 N N N 47.497 -29.314 -23.453 4.845 -0.374 2.722 HBGA 05R 43 EBN HBI HBI H 0 1 N N N 49.308 -30.492 -24.095 6.576 -1.872 1.911 HBI 05R 44 EBN HBJ HBJ H 0 1 N N N 51.130 -31.991 -23.353 8.837 -2.065 0.955 HBJ 05R 45 EBN HBO HBO H 0 1 N N N 48.764 -29.114 -20.073 6.304 2.132 0.469 HBO 05R 46 EBN HNBD HNBD H 0 0 N N N 46.911 -26.780 -21.748 2.300 0.136 1.996 H LYS 47 EBN HAX HAX H 0 1 N N N 48.655 -25.007 -23.378 1.938 -0.299 -0.869 HA LYS 48 EBN HAY HAY H 0 1 N N N 46.680 -23.341 -22.618 1.195 -2.409 1.206 HB2 LYS 49 EBN HAYA HAYA H 0 0 N N N 46.602 -24.390 -24.074 0.646 -2.420 -0.488 HB3 LYS 50 EBN HAZ HAZ H 0 1 N N N 45.611 -25.853 -21.757 3.005 -2.478 -1.251 HG2 LYS 51 EBN HAZA HAZA H 0 0 N N N 44.767 -24.273 -21.887 3.553 -2.467 0.442 HG3 LYS 52 EBN HBAA HBAA H 0 0 N N N 45.080 -26.279 -24.191 2.348 -4.596 0.846 HD2 LYS 53 EBN HBAB HBAB H 0 0 N N N 43.624 -26.145 -23.147 1.799 -4.607 -0.847 HD3 LYS 54 EBN HBB HBB H 0 1 N N N 44.598 -23.633 -24.505 4.158 -4.665 -1.610 HE2 LYS 55 EBN HBBA HBBA H 0 0 N N N 43.830 -24.888 -25.536 4.706 -4.655 0.083 HE3 LYS 56 EBN HNBC HNBC H 0 0 N N N 42.251 -23.315 -24.709 2.981 -6.730 -1.102 HZ1 LYS 57 EBN HNBA HNBA H 0 0 N N N 41.936 -24.795 -24.095 4.610 -6.888 -0.807 HZ2 LYS 58 EBN HN HN H 0 1 N N N 47.953 -25.961 -20.139 -0.700 -0.783 -1.124 H LYS 59 EBN HA HA H 0 1 N N N 49.576 -23.732 -18.979 -2.202 0.548 0.998 HA LYS 60 EBN HB HB H 0 1 N N N 47.719 -25.773 -17.666 -1.894 1.759 -1.786 HB2 LYS 61 EBN HBA HBA H 0 1 N N N 48.787 -24.651 -16.755 -3.098 2.282 -0.584 HB3 LYS 62 EBN HG HG H 0 1 N N N 47.801 -22.744 -18.151 -1.275 2.822 1.008 HG2 LYS 63 EBN HGA HGA H 0 1 N N N 46.604 -23.922 -18.788 -0.071 2.299 -0.194 HG3 LYS 64 EBN HD HD H 0 1 N N N 45.574 -24.201 -16.689 -0.879 4.042 -1.762 HD2 LYS 65 EBN HDA HDA H 0 1 N N N 47.004 -23.583 -15.796 -2.084 4.565 -0.560 HD3 LYS 66 EBN HE HE H 0 1 N N N 46.425 -21.422 -17.375 -0.261 5.105 1.031 HE2 LYS 67 EBN HEA HEA H 0 1 N N N 44.781 -22.104 -17.137 0.944 4.582 -0.170 HE3 LYS 68 EBN HNZ HNZ H 0 1 N N N 45.372 -20.565 -15.412 -1.003 6.755 -0.591 HZ1 LYS 69 EBN HNZA HNZA H 0 0 N N N 45.192 -22.062 -14.785 0.606 6.964 -0.227 HZ2 LYS 70 EBN HAA HAA H 0 1 N N N 51.545 -27.158 -22.798 -8.470 1.557 0.677 HAA 05T 71 EBN HAAA HAAA H 0 0 N N N 52.175 -28.834 -22.646 -8.645 0.548 2.133 HAAA 05T 72 EBN HAB HAB H 0 1 N N N 54.484 -27.924 -22.740 -9.607 -1.275 0.754 HAB 05T 73 EBN HNAC HNAC H 0 0 N N N 54.529 -27.540 -25.103 -10.923 1.329 0.878 HNAC 05T 74 EBN HNAE HNAE H 0 0 N N N 50.701 -28.662 -25.690 -13.289 1.186 1.109 HNAE 05T 75 EBN HNAA HNAA H 0 0 N N N 51.140 -28.100 -24.111 -14.069 -0.282 0.865 HNAA 05T 76 EBN HNAF HNAF H 0 0 N N N 52.162 -28.783 -27.243 -12.812 -2.150 0.306 HNAF 05T 77 EBN HAG HAG H 0 1 N N N 54.837 -25.598 -23.485 -10.163 -0.832 -1.622 HAG 05T 78 EBN HAGA HAGA H 0 0 N N N 53.074 -25.302 -23.309 -9.356 0.751 -1.515 HAGA 05T 79 EBN HAH HAH H 0 1 N N N 54.945 -26.312 -21.076 -8.027 -1.958 -1.057 HAH 05T 80 EBN HAHA HAHA H 0 0 N N N 54.326 -24.633 -21.233 -7.852 -0.950 -2.513 HAHA 05T 81 EBN HAI HAI H 0 1 N N N 52.013 -25.534 -21.192 -6.890 0.873 -1.134 HAI 05T 82 EBN HAJ HAJ H 0 1 N N N 51.726 -27.878 -20.403 -6.334 0.431 1.242 HAJ 05T 83 EBN HAJA HAJA H 0 0 N N N 53.491 -28.127 -20.630 -7.141 -1.152 1.136 HAJA 05T 84 EBN HAK HAK H 0 1 N N N 52.920 -26.719 -18.661 -5.528 -1.804 -0.598 HAK 05T 85 EBN HAKA HAKA H 0 0 N N N 53.712 -25.140 -18.988 -5.425 -0.907 -2.132 HAKA 05T 86 EBN HNAL HNAL H 0 0 N N N 51.553 -24.160 -19.397 -4.675 0.829 -0.035 HNAL 05T 87 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EBN NAL C SING N N 1 EBN CA C SING N N 2 EBN C O DOUB N N 3 EBN CAV N SING N N 4 EBN N CA SING N N 5 EBN N HN SING N N 6 EBN CA CB SING N N 7 EBN CA HA SING N N 8 EBN CG CB SING N N 9 EBN CB HB SING N N 10 EBN CB HBA SING N N 11 EBN CG CD SING N N 12 EBN CE CD SING N N 13 EBN CD HD SING N N 14 EBN CD HDA SING N N 15 EBN CE NZ SING N N 16 EBN CE HE SING N N 17 EBN CE HEA SING N N 18 EBN CG HG SING N N 19 EBN CG HGA SING N N 20 EBN NZ HNZ SING N N 21 EBN NZ HNZA SING N N 22 EBN CAB CAA SING N N 23 EBN CAA CAJ SING N N 24 EBN CAA HAA SING N N 25 EBN CAA HAAA SING N N 26 EBN NAC CAB SING N N 27 EBN CAB CAG SING N N 28 EBN CAB HAB SING N N 29 EBN CAD NAC SING N N 30 EBN NAC HNAC SING N N 31 EBN NAF CAD DOUB N N 32 EBN CAD NAE SING N N 33 EBN NAE HNAE SING N N 34 EBN NAE HNAA SING N N 35 EBN NAF HNAF SING N N 36 EBN CAG CAH SING N N 37 EBN CAG HAG SING N N 38 EBN CAG HAGA SING N N 39 EBN CAH CAI SING N N 40 EBN CAH HAH SING N N 41 EBN CAH HAHA SING N N 42 EBN CAJ CAI SING N N 43 EBN CAI CAK SING N N 44 EBN CAI HAI SING N N 45 EBN CAJ HAJ SING N N 46 EBN CAJ HAJA SING N N 47 EBN CAK NAL SING N N 48 EBN CAK HAK SING N N 49 EBN CAK HAKA SING N N 50 EBN NAL HNAL SING N N 51 EBN CAX CAV SING N N 52 EBN OAW CAV DOUB N N 53 EBN CAY CAX SING N N 54 EBN CAX NBD SING N N 55 EBN CAX HAX SING N N 56 EBN CAY CAZ SING N N 57 EBN CAY HAY SING N N 58 EBN CAY HAYA SING N N 59 EBN CBA CAZ SING N N 60 EBN CAZ HAZ SING N N 61 EBN CAZ HAZA SING N N 62 EBN CBB CBA SING N N 63 EBN CBA HBAA SING N N 64 EBN CBA HBAB SING N N 65 EBN CBB NBC SING N N 66 EBN CBB HBB SING N N 67 EBN CBB HBBA SING N N 68 EBN NBC HNBC SING N N 69 EBN NBC HNBA SING N N 70 EBN CBE NBD SING N N 71 EBN NBD HNBD SING N N 72 EBN OBF CBE DOUB N N 73 EBN CBE CBG SING N N 74 EBN CBG CBH SING N N 75 EBN CBG HBG SING N N 76 EBN CBG HBGA SING N N 77 EBN CBI CBH DOUB Y N 78 EBN CBH CBO SING Y N 79 EBN CBI CBJ SING Y N 80 EBN CBI HBI SING N N 81 EBN CBJ CBK DOUB Y N 82 EBN CBJ HBJ SING N N 83 EBN CBK CLL SING N N 84 EBN CBK CBM SING Y N 85 EBN CBO CBM DOUB Y N 86 EBN CBM CLN SING N N 87 EBN CBO HBO SING N N 88 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor EBN SMILES ACDLabs 12.01 "Clc1ccc(cc1Cl)CC(=O)NC(C(=O)NC(C(=O)NCC2CCC(NC(=[N@H])N)CC2)CCCCN)CCCCN" EBN InChI InChI 1.03 "InChI=1S/C28H46Cl2N8O3/c29-21-12-9-19(15-22(21)30)16-25(39)37-24(6-2-4-14-32)27(41)38-23(5-1-3-13-31)26(40)35-17-18-7-10-20(11-8-18)36-28(33)34/h9,12,15,18,20,23-24H,1-8,10-11,13-14,16-17,31-32H2,(H,35,40)(H,37,39)(H,38,41)(H4,33,34,36)/t18-,20-,23-,24-/m0/s1" EBN InChIKey InChI 1.03 OWKCLMWSCHVRNJ-BTDFZRAWSA-N EBN SMILES_CANONICAL CACTVS 3.370 "NCCCC[C@H](NC(=O)[C@H](CCCCN)NC(=O)Cc1ccc(Cl)c(Cl)c1)C(=O)NC[C@H]2CC[C@@H](CC2)NC(N)=N" EBN SMILES CACTVS 3.370 "NCCCC[CH](NC(=O)[CH](CCCCN)NC(=O)Cc1ccc(Cl)c(Cl)c1)C(=O)NC[CH]2CC[CH](CC2)NC(N)=N" EBN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C(\N)/NC1CCC(CC1)CNC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)Cc2ccc(c(c2)Cl)Cl" EBN SMILES "OpenEye OEToolkits" 1.7.6 "c1cc(c(cc1CC(=O)NC(CCCCN)C(=O)NC(CCCCN)C(=O)NCC2CCC(CC2)NC(=N)N)Cl)Cl" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier EBN "SYSTEMATIC NAME" ACDLabs 12.01 "N~2~-[(3,4-dichlorophenyl)acetyl]-L-lysyl-N-[(trans-4-carbamimidamidocyclohexyl)methyl]-L-lysinamide" EBN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-6-azanyl-N-[(2S)-6-azanyl-1-[(4-carbamimidamidocyclohexyl)methylamino]-1-oxidanylidene-hexan-2-yl]-2-[2-(3,4-dichlorophenyl)ethanoylamino]hexanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site EBN "Create component" 2012-10-26 EBI EBN "Modify name" 2013-01-24 EBI EBN "Initial release" 2013-03-27 RCSB EBN "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id EBN _pdbx_chem_comp_synonyms.name "3,4-dichlorophenylacetyl-Lys-Lys-GCMA" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##