data_EBO # _chem_comp.id EBO _chem_comp.name "(2~{S})-2-azanyl-4-[(3~{S})-3-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonomethyl)pyridin-4-yl]methylideneamino]-4-oxidanyl-4-oxidanylidene-butyl]sulfanyl-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H24 N3 O8 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-12-06 _chem_comp.pdbx_modified_date 2020-12-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 449.416 _chem_comp.one_letter_code ? _chem_comp.three_letter_code EBO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6LGO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal EBO O6 O1 O 0 1 N N N -26.675 58.167 -17.536 0.883 -4.968 0.536 O6 EBO 1 EBO C15 C1 C 0 1 N N N -25.722 57.628 -18.180 1.276 -3.838 -0.073 C15 EBO 2 EBO O5 O2 O 0 1 N N N -24.706 58.211 -18.566 2.196 -3.861 -0.855 O5 EBO 3 EBO C8 C2 C 0 1 N N S -25.694 56.195 -18.564 0.569 -2.539 0.221 C8 EBO 4 EBO C9 C3 C 0 1 N N N -25.661 55.891 -20.110 -0.909 -2.667 -0.154 C9 EBO 5 EBO C10 C4 C 0 1 N N N -26.158 57.014 -21.023 -1.651 -1.394 0.258 C10 EBO 6 EBO S S1 S 0 1 N N N -25.975 56.424 -22.636 -3.404 -1.546 -0.187 S EBO 7 EBO C11 C5 C 0 1 N N N -27.343 57.178 -23.369 -4.104 0.032 0.372 C11 EBO 8 EBO C12 C6 C 0 1 N N N -27.157 57.240 -24.849 -5.602 0.062 0.063 C12 EBO 9 EBO C13 C7 C 0 1 N N S -27.319 55.944 -25.611 -6.193 1.392 0.534 C13 EBO 10 EBO C14 C8 C 0 1 N N N -28.632 55.223 -25.412 -7.640 1.474 0.121 C14 EBO 11 EBO O4 O3 O 0 1 N N N -29.541 55.288 -26.227 -8.512 1.231 0.923 O4 EBO 12 EBO O3 O4 O 0 1 N N N -28.833 54.478 -24.450 -7.961 1.815 -1.137 O3 EBO 13 EBO N2 N1 N 0 1 N N N -27.124 56.407 -27.000 -6.096 1.480 1.997 N2 EBO 14 EBO N1 N2 N 0 1 N N N -26.644 55.451 -17.696 1.180 -1.463 -0.562 N1 EBO 15 EBO C7 C9 C 0 1 N N N -26.823 54.221 -17.751 1.710 -0.447 0.038 C7 EBO 16 EBO C3 C10 C 0 1 Y N N -27.648 53.523 -16.776 2.326 0.638 -0.751 C3 EBO 17 EBO C2 C11 C 0 1 Y N N -28.046 54.247 -15.569 2.348 0.587 -2.155 C2 EBO 18 EBO O7 O5 O 0 1 N N N -27.746 55.550 -15.300 1.801 -0.464 -2.817 O7 EBO 19 EBO C4 C12 C 0 1 Y N N -27.993 52.080 -16.926 2.900 1.749 -0.123 C4 EBO 20 EBO C6 C13 C 0 1 N N N -27.630 51.039 -17.998 2.901 1.861 1.380 C6 EBO 21 EBO P P1 P 0 1 N N N -26.074 50.510 -18.929 4.414 1.092 2.045 P EBO 22 EBO O2 O6 O 0 1 N N N -24.973 49.686 -18.449 4.394 -0.488 1.736 O2 EBO 23 EBO O1 O7 O 0 1 N N N -26.677 49.482 -19.924 5.601 1.704 1.407 O1 EBO 24 EBO O O8 O 0 1 N N N -25.549 51.613 -19.861 4.480 1.326 3.637 O EBO 25 EBO C5 C14 C 0 1 Y N N -28.856 51.650 -15.853 3.464 2.740 -0.899 C5 EBO 26 EBO N N3 N 0 1 Y N N -29.258 52.315 -14.742 3.469 2.654 -2.215 N EBO 27 EBO C1 C15 C 0 1 Y N N -28.874 53.585 -14.578 2.938 1.632 -2.853 C1 EBO 28 EBO C C16 C 0 1 N N N -29.195 54.445 -13.405 2.972 1.595 -4.359 C EBO 29 EBO H1 H1 H 0 1 N N N -26.484 59.087 -17.398 1.367 -5.776 0.316 H1 EBO 30 EBO H2 H2 H 0 1 N N N -24.706 55.852 -18.224 0.656 -2.310 1.283 H2 EBO 31 EBO H3 H3 H 0 1 N N N -26.288 55.006 -20.293 -0.999 -2.807 -1.231 H3 EBO 32 EBO H4 H4 H 0 1 N N N -24.620 55.667 -20.387 -1.342 -3.524 0.362 H4 EBO 33 EBO H5 H5 H 0 1 N N N -25.555 57.922 -20.876 -1.561 -1.254 1.335 H5 EBO 34 EBO H6 H6 H 0 1 N N N -27.215 57.238 -20.815 -1.218 -0.538 -0.258 H6 EBO 35 EBO H7 H7 H 0 1 N N N -27.453 58.198 -22.972 -3.952 0.137 1.446 H7 EBO 36 EBO H8 H8 H 0 1 N N N -28.247 56.595 -23.139 -3.610 0.853 -0.147 H8 EBO 37 EBO H9 H9 H 0 1 N N N -26.141 57.614 -25.041 -5.754 -0.043 -1.011 H9 EBO 38 EBO H10 H10 H 0 1 N N N -27.892 57.954 -25.247 -6.097 -0.759 0.582 H10 EBO 39 EBO H11 H11 H 0 1 N N N -26.497 55.266 -25.336 -5.640 2.216 0.083 H11 EBO 40 EBO H12 H12 H 0 1 N N N -29.692 54.081 -24.531 -8.903 1.854 -1.354 H12 EBO 41 EBO H13 H13 H 0 1 N N N -26.244 56.875 -27.075 -6.421 2.377 2.328 H13 EBO 42 EBO H14 H14 H 0 1 N N N -27.137 55.621 -27.618 -6.601 0.727 2.440 H14 EBO 43 EBO H16 H16 H 0 1 N N N -26.354 53.656 -18.543 1.702 -0.392 1.117 H16 EBO 44 EBO H17 H17 H 0 1 N N N -28.113 55.793 -14.458 0.867 -0.347 -3.036 H17 EBO 45 EBO H18 H18 H 0 1 N N N -28.317 51.297 -18.817 2.872 2.912 1.666 H18 EBO 46 EBO H19 H19 H 0 1 N N N -27.954 50.098 -17.530 2.026 1.350 1.783 H19 EBO 47 EBO H20 H20 H 0 1 N N N -24.995 48.842 -18.885 3.641 -0.955 2.125 H20 EBO 48 EBO H21 H21 H 0 1 N N N -25.728 51.377 -20.764 5.261 0.942 4.059 H21 EBO 49 EBO H22 H22 H 0 1 N N N -29.240 50.645 -15.949 3.909 3.601 -0.421 H22 EBO 50 EBO H23 H23 H 0 1 N N N -29.801 53.874 -12.686 2.077 2.075 -4.754 H23 EBO 51 EBO H24 H24 H 0 1 N N N -28.262 54.769 -12.922 3.856 2.124 -4.715 H24 EBO 52 EBO H25 H25 H 0 1 N N N -29.759 55.327 -13.741 3.007 0.559 -4.696 H25 EBO 53 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EBO N2 C13 SING N N 1 EBO O4 C14 DOUB N N 2 EBO C13 C14 SING N N 3 EBO C13 C12 SING N N 4 EBO C14 O3 SING N N 5 EBO C12 C11 SING N N 6 EBO C11 S SING N N 7 EBO S C10 SING N N 8 EBO C10 C9 SING N N 9 EBO C9 C8 SING N N 10 EBO O1 P DOUB N N 11 EBO O P SING N N 12 EBO P O2 SING N N 13 EBO P C6 SING N N 14 EBO O5 C15 DOUB N N 15 EBO C8 C15 SING N N 16 EBO C8 N1 SING N N 17 EBO C15 O6 SING N N 18 EBO C6 C4 SING N N 19 EBO C7 N1 DOUB N N 20 EBO C7 C3 SING N N 21 EBO C4 C3 DOUB Y N 22 EBO C4 C5 SING Y N 23 EBO C3 C2 SING Y N 24 EBO C5 N DOUB Y N 25 EBO C2 O7 SING N N 26 EBO C2 C1 DOUB Y N 27 EBO N C1 SING Y N 28 EBO C1 C SING N N 29 EBO O6 H1 SING N N 30 EBO C8 H2 SING N N 31 EBO C9 H3 SING N N 32 EBO C9 H4 SING N N 33 EBO C10 H5 SING N N 34 EBO C10 H6 SING N N 35 EBO C11 H7 SING N N 36 EBO C11 H8 SING N N 37 EBO C12 H9 SING N N 38 EBO C12 H10 SING N N 39 EBO C13 H11 SING N N 40 EBO O3 H12 SING N N 41 EBO N2 H13 SING N N 42 EBO N2 H14 SING N N 43 EBO C7 H16 SING N N 44 EBO O7 H17 SING N N 45 EBO C6 H18 SING N N 46 EBO C6 H19 SING N N 47 EBO O2 H20 SING N N 48 EBO O H21 SING N N 49 EBO C5 H22 SING N N 50 EBO C H23 SING N N 51 EBO C H24 SING N N 52 EBO C H25 SING N N 53 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor EBO InChI InChI 1.03 "InChI=1S/C16H24N3O8PS/c1-9-14(20)11(10(6-18-9)8-28(25,26)27)7-19-13(16(23)24)3-5-29-4-2-12(17)15(21)22/h6-7,12-13,20H,2-5,8,17H2,1H3,(H,21,22)(H,23,24)(H2,25,26,27)/b19-7+/t12-,13-/m0/s1" EBO InChIKey InChI 1.03 QGHPUHOZHNBFHZ-VNBISDOUSA-N EBO SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(C[P](O)(O)=O)c(C=N[C@@H](CCSCC[C@H](N)C(O)=O)C(O)=O)c1O" EBO SMILES CACTVS 3.385 "Cc1ncc(C[P](O)(O)=O)c(C=N[CH](CCSCC[CH](N)C(O)=O)C(O)=O)c1O" EBO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)CP(=O)(O)O)/C=N/[C@@H](CCSCC[C@@H](C(=O)O)N)C(=O)O)O" EBO SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)CP(=O)(O)O)C=NC(CCSCCC(C(=O)O)N)C(=O)O)O" # _pdbx_chem_comp_identifier.comp_id EBO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-4-[(3~{S})-3-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonomethyl)pyridin-4-yl]methylideneamino]-4-oxidanyl-4-oxidanylidene-butyl]sulfanyl-butanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site EBO "Create component" 2019-12-06 PDBJ EBO "Initial release" 2020-12-09 RCSB ##