data_ECC # _chem_comp.id ECC _chem_comp.name "(4S)-4-amino-5-hydroxypentanamide" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H12 N2 O2" _chem_comp.mon_nstd_parent_comp_id GLN _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-07-21 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 132.161 _chem_comp.one_letter_code Q _chem_comp.three_letter_code ECC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3SNA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ECC C C C 0 1 N N N Y N Y 14.944 -3.515 23.957 2.501 -0.783 -0.037 C ECC 1 ECC N N N 0 1 N N N Y Y N 16.453 -1.830 23.076 1.558 1.395 -0.644 N ECC 2 ECC O O O 0 1 N N N Y N Y 14.344 -3.963 25.176 3.755 -0.213 0.343 O ECC 3 ECC CA CA C 0 1 N N S Y N N 15.415 -2.068 24.076 1.381 0.226 0.229 CA ECC 4 ECC CB CB C 0 1 N N N N N N 14.257 -1.092 23.848 0.028 -0.426 -0.060 CB ECC 5 ECC CD CD C 0 1 N N N N N N 12.791 0.605 24.949 -2.429 -0.104 0.039 CD ECC 6 ECC CG CG C 0 1 N N N N N N 14.168 -0.016 24.928 -1.096 0.539 0.324 CG ECC 7 ECC OE1 OE1 O 0 1 N N N N N N 12.197 0.816 23.913 -2.476 -1.224 -0.425 OE1 ECC 8 ECC NE2 NE2 N 0 1 N N N N N N 12.273 0.911 26.130 -3.569 0.566 0.300 NE2 ECC 9 ECC H1 H H 0 1 N Y N Y N Y 14.202 -3.583 23.148 2.521 -1.031 -1.097 H ECC 10 ECC HAA HA H 0 1 N N N Y N Y 15.810 -4.154 23.729 2.321 -1.686 0.545 HA ECC 11 ECC H2 HN H 0 1 N Y N Y Y N 16.771 -0.884 23.143 1.528 1.127 -1.616 HN ECC 12 ECC H HNA H 0 1 N N N Y Y N 17.220 -2.451 23.237 0.868 2.103 -0.442 HNA ECC 13 ECC HO HO H 0 1 N N N Y N Y 14.060 -4.864 25.077 4.511 -0.798 0.202 HO ECC 14 ECC HA HAA H 0 1 N N N Y N N 15.809 -1.904 25.090 1.417 0.542 1.271 HAA ECC 15 ECC HB HB H 0 1 N N N N N N 14.407 -0.597 22.877 -0.043 -0.662 -1.122 HB ECC 16 ECC HBA HBA H 0 1 N N N N N N 13.317 -1.663 23.849 -0.066 -1.343 0.523 HBA ECC 17 ECC HG HG H 0 1 N N N N N N 14.372 -0.472 25.908 -1.026 0.775 1.385 HG ECC 18 ECC HGA HGA H 0 1 N N N N N N 14.912 0.766 24.718 -1.003 1.455 -0.259 HGA ECC 19 ECC HNE2 HNE2 H 0 0 N N N N N N 11.366 1.329 26.185 -3.532 1.461 0.671 HNE2 ECC 20 ECC HNEA HNEA H 0 0 N N N N N N 12.789 0.724 26.966 -4.427 0.152 0.117 HNEA ECC 21 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ECC C CA SING N N 1 ECC C O SING N N 2 ECC C H1 SING N N 3 ECC C HAA SING N N 4 ECC N CA SING N N 5 ECC N H2 SING N N 6 ECC N H SING N N 7 ECC O HO SING N N 8 ECC CB CA SING N N 9 ECC CA HA SING N N 10 ECC CB CG SING N N 11 ECC CB HB SING N N 12 ECC CB HBA SING N N 13 ECC OE1 CD DOUB N N 14 ECC CG CD SING N N 15 ECC CD NE2 SING N N 16 ECC CG HG SING N N 17 ECC CG HGA SING N N 18 ECC NE2 HNE2 SING N N 19 ECC NE2 HNEA SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ECC SMILES ACDLabs 12.01 "O=C(N)CCC(N)CO" ECC InChI InChI 1.03 "InChI=1S/C5H12N2O2/c6-4(3-8)1-2-5(7)9/h4,8H,1-3,6H2,(H2,7,9)/t4-/m0/s1" ECC InChIKey InChI 1.03 FQLOSLKSJZSARD-BYPYZUCNSA-N ECC SMILES_CANONICAL CACTVS 3.370 "N[C@H](CO)CCC(N)=O" ECC SMILES CACTVS 3.370 "N[CH](CO)CCC(N)=O" ECC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C(CC(=O)N)[C@@H](CO)N" ECC SMILES "OpenEye OEToolkits" 1.7.2 "C(CC(=O)N)C(CO)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ECC "SYSTEMATIC NAME" ACDLabs 12.01 "(4S)-4-amino-5-hydroxypentanamide" ECC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(4S)-4-azanyl-5-oxidanyl-pentanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ECC "Create component" 2011-07-21 RCSB ECC "Other modification" 2011-08-10 RCSB ECC "Modify backbone" 2023-11-03 PDBE ECC "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id ECC _pdbx_chem_comp_pcm.modified_residue_id GLN _pdbx_chem_comp_pcm.type Deoxidation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid backbone" _pdbx_chem_comp_pcm.polypeptide_position C-terminal _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #