data_ECI
#
_chem_comp.id ECI
_chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-2-[[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-2-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl]oxy-sulfanyl-phosphoryl]oxymethyl]-4-oxidanyl-oxolan-3-yl]oxy-sulfanyl-phosphinic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H26 N10 O12 P2 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-12-06
_chem_comp.pdbx_modified_date 2022-04-15
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 724.558
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ECI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7T27
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ECI C10 C1 C 0 1 N N S 9.709 27.740 76.524 3.332 -1.954 -0.171 C10 ECI 1
ECI C15 C2 C 0 1 N N R 10.613 23.385 78.701 -2.952 -0.901 0.330 C15 ECI 2
ECI C17 C3 C 0 1 N N R 9.798 21.315 79.005 -3.996 1.162 0.475 C17 ECI 3
ECI C21 C4 C 0 1 Y N N 9.792 20.629 81.384 -4.757 3.574 0.377 C21 ECI 4
ECI C22 C5 C 0 1 Y N N 9.744 19.405 82.052 -4.291 4.714 -0.299 C22 ECI 5
ECI C26 C6 C 0 1 Y N N 9.782 21.721 83.405 -6.433 4.836 1.316 C26 ECI 6
ECI C28 C7 C 0 1 N N R 8.818 22.017 78.533 -4.897 0.330 -0.474 C28 ECI 7
ECI C02 C8 C 0 1 N N N 3.799 31.708 76.173 8.806 2.401 -0.518 C02 ECI 8
ECI C03 C9 C 0 1 Y N N 4.690 30.575 76.292 8.162 1.146 -0.412 C03 ECI 9
ECI C05 C10 C 0 1 Y N N 5.619 28.718 76.703 7.524 -0.924 -0.452 C05 ECI 10
ECI C07 C11 C 0 1 N N R 7.936 29.128 76.128 5.283 -0.785 0.702 C07 ECI 11
ECI C08 C12 C 0 1 N N R 8.824 28.727 77.232 4.148 -0.653 -0.338 C08 ECI 12
ECI C14 C13 C 0 1 N N N 11.562 24.562 78.880 -1.918 -1.582 -0.569 C14 ECI 13
ECI C19 C14 C 0 1 Y N N 9.778 18.982 79.925 -2.985 3.068 -0.834 C19 ECI 14
ECI C23 C15 C 0 1 Y N N 9.750 19.428 83.450 -4.978 5.925 -0.108 C23 ECI 15
ECI C30 C16 C 0 1 N N S 9.144 23.429 78.384 -4.366 -1.107 -0.248 C30 ECI 16
ECI C38 C17 C 0 1 N N R 9.507 27.679 75.256 4.070 -2.719 0.950 C38 ECI 17
ECI C39 C18 C 0 1 N N N 9.749 26.717 74.178 4.061 -4.222 0.664 C39 ECI 18
ECI C42 C19 C 0 1 Y N N 6.037 30.713 76.059 6.909 1.086 0.209 C42 ECI 19
ECI C44 C20 C 0 1 N N N 5.809 32.958 75.489 6.959 3.365 0.581 C44 ECI 20
ECI N04 N1 N 0 1 Y N N 4.475 29.327 76.695 8.482 -0.114 -0.794 N04 ECI 21
ECI N06 N2 N 0 1 Y N N 6.607 29.567 76.291 6.529 -0.228 0.171 N06 ECI 22
ECI N18 N3 N 0 1 Y N N 9.846 20.327 80.058 -3.914 2.552 0.020 N18 ECI 23
ECI N20 N4 N 0 1 Y N N 9.725 18.391 81.119 -3.212 4.335 -1.024 N20 ECI 24
ECI N24 N5 N 0 1 N N N 9.655 18.221 84.194 -4.567 7.081 -0.747 N24 ECI 25
ECI N25 N6 N 0 1 Y N N 9.724 20.587 84.067 -6.032 5.934 0.701 N25 ECI 26
ECI N27 N7 N 0 1 Y N N 9.828 21.804 82.064 -5.821 3.680 1.166 N27 ECI 27
ECI N43 N8 N 0 1 N N N 6.660 31.895 75.620 6.351 2.205 0.686 N43 ECI 28
ECI N45 N9 N 0 1 N N N 6.267 34.217 75.081 6.348 4.486 1.085 N45 ECI 29
ECI N46 N10 N 0 1 N N N 4.432 32.846 75.726 8.183 3.487 -0.008 N46 ECI 30
ECI O01 O1 O 0 1 N N N 2.623 31.763 76.418 9.897 2.501 -1.051 O01 ECI 31
ECI O09 O2 O 0 1 N N N 9.293 29.577 78.138 3.337 0.488 -0.051 O09 ECI 32
ECI O11 O3 O 0 1 N N N 11.067 27.791 76.980 1.991 -1.657 0.224 O11 ECI 33
ECI O13 O4 O 0 1 N N N 11.430 25.520 77.872 -0.624 -1.471 0.026 O13 ECI 34
ECI O16 O5 O 0 1 N N N 10.989 22.211 79.164 -2.709 0.516 0.369 O16 ECI 35
ECI O29 O6 O 0 1 N N N 8.254 21.599 77.319 -6.270 0.433 -0.092 O29 ECI 36
ECI O31 O7 O 0 1 N N N 8.606 24.342 77.524 -5.192 -1.804 0.687 O31 ECI 37
ECI O34 O8 O 0 1 N N N 7.037 25.752 76.343 -4.963 -4.173 -0.153 O34 ECI 38
ECI O35 O9 O 0 1 N N N 6.369 23.398 76.929 -6.675 -3.748 1.652 O35 ECI 39
ECI O37 O10 O 0 1 N N N 13.157 27.397 78.265 0.848 -1.547 -2.024 O37 ECI 40
ECI O40 O11 O 0 1 N N N 8.886 25.602 74.451 4.644 -4.920 1.766 O40 ECI 41
ECI O41 O12 O 0 1 N N N 8.153 28.437 75.054 5.420 -2.207 0.919 O41 ECI 42
ECI P12 P1 P 0 1 N N S 11.678 27.065 78.270 0.706 -2.078 -0.650 P12 ECI 43
ECI P32 P2 P 0 1 N N N 7.032 24.645 77.380 -5.948 -3.181 0.333 P32 ECI 44
ECI S33 S1 S 0 1 N N N 6.279 25.192 79.185 -7.395 -2.825 -1.175 S33 ECI 45
ECI S36 S2 S 0 1 N N N 10.763 27.522 80.028 0.561 -4.192 -0.720 S36 ECI 46
ECI H101 H1 H 0 0 N N N 9.350 26.775 76.912 3.338 -2.530 -1.097 H101 ECI 47
ECI H151 H2 H 0 0 N N N 10.920 23.185 77.664 -2.897 -1.314 1.337 H151 ECI 48
ECI H171 H3 H 0 0 N N N 10.104 20.716 78.135 -4.366 1.115 1.499 H171 ECI 49
ECI H261 H4 H 0 0 N N N 9.793 22.640 83.972 -7.294 4.888 1.965 H261 ECI 50
ECI H281 H5 H 0 0 N N N 8.004 21.982 79.272 -4.759 0.637 -1.510 H281 ECI 51
ECI H051 H6 H 0 0 N N N 5.769 27.689 76.993 7.516 -1.989 -0.634 H051 ECI 52
ECI H071 H7 H 0 0 N N N 8.413 30.081 75.854 5.008 -0.283 1.629 H071 ECI 53
ECI H081 H8 H 0 0 N N N 8.173 28.063 77.820 4.560 -0.586 -1.345 H081 ECI 54
ECI H142 H9 H 0 0 N N N 12.595 24.185 78.874 -2.176 -2.634 -0.686 H142 ECI 55
ECI H141 H10 H 0 0 N N N 11.352 25.039 79.849 -1.912 -1.098 -1.546 H141 ECI 56
ECI H191 H11 H 0 0 N N N 9.768 18.459 78.980 -2.182 2.507 -1.289 H191 ECI 57
ECI H301 H12 H 0 0 N N N 8.764 23.810 79.343 -4.317 -1.648 -1.193 H301 ECI 58
ECI H381 H13 H 0 0 N N N 10.183 28.478 74.919 3.608 -2.515 1.916 H381 ECI 59
ECI H392 H14 H 0 0 N N N 10.801 26.397 74.179 3.034 -4.559 0.522 H392 ECI 60
ECI H391 H15 H 0 0 N N N 9.502 27.163 73.203 4.637 -4.423 -0.240 H391 ECI 61
ECI H242 H16 H 0 0 N N N 9.574 18.434 85.168 -3.796 7.062 -1.336 H242 ECI 62
ECI H241 H17 H 0 0 N N N 8.849 17.709 83.897 -5.049 7.911 -0.607 H241 ECI 63
ECI H451 H18 H 0 0 N N N 7.236 34.355 74.878 5.480 4.415 1.511 H451 ECI 64
ECI H452 H19 H 0 0 N N N 5.625 34.978 74.993 6.785 5.349 1.015 H452 ECI 65
ECI H461 H20 H 0 0 N N N 3.867 33.654 75.558 8.604 4.358 -0.069 H461 ECI 66
ECI H091 H21 H 0 0 N N N 9.843 29.110 78.756 3.799 1.332 -0.140 H091 ECI 67
ECI H291 H22 H 0 0 N N N 8.026 20.678 77.375 -6.623 1.332 -0.131 H291 ECI 68
ECI H1 H23 H 0 1 N N N 6.052 23.511 76.041 -7.335 -3.148 2.026 H1 ECI 69
ECI H401 H24 H 0 0 N N N 8.288 25.828 75.154 4.672 -5.880 1.653 H401 ECI 70
ECI H2 H25 H 0 1 N N N 5.970 26.438 78.982 -7.938 -4.040 -1.367 H2 ECI 71
ECI H3 H26 H 0 1 N N N 11.746 28.008 80.726 0.439 -4.530 0.576 H3 ECI 72
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ECI C39 O40 SING N N 1
ECI C39 C38 SING N N 2
ECI O41 C38 SING N N 3
ECI O41 C07 SING N N 4
ECI N45 C44 SING N N 5
ECI C38 C10 SING N N 6
ECI C44 N43 DOUB N N 7
ECI C44 N46 SING N N 8
ECI N43 C42 SING N N 9
ECI N46 C02 SING N N 10
ECI C42 N06 SING Y N 11
ECI C42 C03 DOUB Y N 12
ECI C07 N06 SING N N 13
ECI C07 C08 SING N N 14
ECI C02 C03 SING N N 15
ECI C02 O01 DOUB N N 16
ECI N06 C05 SING Y N 17
ECI C03 N04 SING Y N 18
ECI O34 P32 DOUB N N 19
ECI C10 O11 SING N N 20
ECI C10 C08 SING N N 21
ECI N04 C05 DOUB Y N 22
ECI O35 P32 SING N N 23
ECI O11 P12 SING N N 24
ECI C08 O09 SING N N 25
ECI O29 C28 SING N N 26
ECI P32 O31 SING N N 27
ECI P32 S33 SING N N 28
ECI O31 C30 SING N N 29
ECI O13 P12 SING N N 30
ECI O13 C14 SING N N 31
ECI O37 P12 DOUB N N 32
ECI P12 S36 SING N N 33
ECI C30 C28 SING N N 34
ECI C30 C15 SING N N 35
ECI C28 C17 SING N N 36
ECI C15 C14 SING N N 37
ECI C15 O16 SING N N 38
ECI C17 O16 SING N N 39
ECI C17 N18 SING N N 40
ECI C19 N18 SING Y N 41
ECI C19 N20 DOUB Y N 42
ECI N18 C21 SING Y N 43
ECI N20 C22 SING Y N 44
ECI C21 C22 DOUB Y N 45
ECI C21 N27 SING Y N 46
ECI C22 C23 SING Y N 47
ECI N27 C26 DOUB Y N 48
ECI C26 N25 SING Y N 49
ECI C23 N25 DOUB Y N 50
ECI C23 N24 SING N N 51
ECI C10 H101 SING N N 52
ECI C15 H151 SING N N 53
ECI C17 H171 SING N N 54
ECI C26 H261 SING N N 55
ECI C28 H281 SING N N 56
ECI C05 H051 SING N N 57
ECI C07 H071 SING N N 58
ECI C08 H081 SING N N 59
ECI C14 H142 SING N N 60
ECI C14 H141 SING N N 61
ECI C19 H191 SING N N 62
ECI C30 H301 SING N N 63
ECI C38 H381 SING N N 64
ECI C39 H392 SING N N 65
ECI C39 H391 SING N N 66
ECI N24 H242 SING N N 67
ECI N24 H241 SING N N 68
ECI N45 H451 SING N N 69
ECI N45 H452 SING N N 70
ECI N46 H461 SING N N 71
ECI O09 H091 SING N N 72
ECI O29 H291 SING N N 73
ECI O35 H1 SING N N 74
ECI O40 H401 SING N N 75
ECI S33 H2 SING N N 76
ECI S36 H3 SING N N 77
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ECI SMILES ACDLabs 12.01 "NC1=Nc2c(ncn2C2OC(CO)C(OP(=O)(S)OCC3OC(n4cnc5c(N)ncnc54)C(O)C3OP(=O)(O)S)C2O)C(=O)N1"
ECI InChI InChI 1.03 "InChI=1S/C20H26N10O12P2S2/c21-14-8-15(24-3-23-14)29(4-25-8)18-11(33)13(41-43(35,36)45)7(40-18)2-38-44(37,46)42-12-6(1-31)39-19(10(12)32)30-5-26-9-16(30)27-20(22)28-17(9)34/h3-7,10-13,18-19,31-33H,1-2H2,(H,37,46)(H2,21,23,24)(H2,35,36,45)(H3,22,27,28,34)/t6-,7-,10-,11-,12-,13-,18-,19-,44+/m1/s1"
ECI InChIKey InChI 1.03 MLCQGAYMLYXJTJ-WEKBUWATSA-N
ECI SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO)[C@@H](O[P@](S)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O[P](O)(S)=O)n5cnc6c(N)ncnc56)[C@H]3O"
ECI SMILES CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO)[CH](O[P](S)(=O)OC[CH]4O[CH]([CH](O)[CH]4O[P](O)(S)=O)n5cnc6c(N)ncnc56)[CH]3O"
ECI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O[C@@H]4[C@H](O[C@H]([C@@H]4O)n5cnc6c5N=C(NC6=O)N)CO)S)OP(=O)(O)S)O)N"
ECI SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(OC4C(OC(C4O)n5cnc6c5N=C(NC6=O)N)CO)S)OP(=O)(O)S)O)N"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ECI "SYSTEMATIC NAME" ACDLabs 12.01 "O-[(2R,3S,4R,5R)-2-({[(S)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl]oxy}(sulfanyl)phosphoryl]oxy}methyl)-5-(6-amino-9H-purin-9-yl)-4-hydroxyoxolan-3-yl] dihydrogen (R)-phosphorothioate (non-preferred name)"
ECI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-2-[[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-2-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl]oxy-sulfanyl-phosphoryl]oxymethyl]-4-oxidanyl-oxolan-3-yl]oxy-sulfanyl-phosphinic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ECI "Create component" 2021-12-06 RCSB
ECI "Initial release" 2022-04-20 RCSB
##