data_ED6 # _chem_comp.id ED6 _chem_comp.name 6-deoxy-1-O-phosphono-beta-L-galactopyranose _chem_comp.type L-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H13 O8 P" _chem_comp.mon_nstd_parent_comp_id FUL _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-12-11 _chem_comp.pdbx_modified_date 2025-02-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 244.136 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ED6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6LH3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ED6 O3P O1 O 0 1 N N N N N N -0.964 -38.147 -18.946 3.031 -0.814 1.231 O3P ED6 1 ED6 PB P1 P 0 1 N N N N N N 0.396 -38.726 -19.240 2.666 0.117 -0.031 PB ED6 2 ED6 O2P O2 O 0 1 N N N N N N 0.376 -40.227 -19.009 3.769 -0.088 -1.186 O2P ED6 3 ED6 O1 O3 O 0 1 N N N N N N 1.540 -38.016 -18.229 1.215 -0.290 -0.596 O1 ED6 4 ED6 C1 C1 C 0 1 N N R N N N 1.411 -38.180 -16.854 0.011 -0.120 0.155 C1 ED6 5 ED6 O5 O4 O 0 1 N N N N N N 2.500 -39.094 -16.380 -0.537 1.173 -0.109 O5 ED6 6 ED6 C5 C2 C 0 1 N N S N N N 2.559 -39.212 -14.918 -1.735 1.457 0.616 C5 ED6 7 ED6 C6 C3 C 0 1 N N N N N N 3.813 -39.934 -14.555 -2.212 2.871 0.278 C6 ED6 8 ED6 C4 C4 C 0 1 N N S N N N 2.568 -37.841 -14.210 -2.817 0.447 0.227 C4 ED6 9 ED6 O4 O5 O 0 1 N N N N N N 3.846 -37.226 -14.422 -3.114 0.577 -1.165 O4 ED6 10 ED6 C3 C5 C 0 1 N N R N N N 1.496 -36.924 -14.706 -2.308 -0.970 0.512 C3 ED6 11 ED6 O3 O6 O 0 1 N N N N N N 1.704 -35.592 -14.135 -3.283 -1.923 0.084 O3 ED6 12 ED6 C2 C6 C 0 1 N N S N N N 1.496 -36.807 -16.181 -1.000 -1.195 -0.253 C2 ED6 13 ED6 O2 O7 O 0 1 N N N N N N 0.360 -36.005 -16.585 -0.479 -2.487 0.063 O2 ED6 14 ED6 O1P O8 O 0 1 N N N N N N 0.790 -38.421 -20.805 2.651 1.536 0.391 O1P ED6 15 ED6 H6 H1 H 0 1 N N N N N N -1.306 -37.728 -19.727 3.059 -1.759 1.028 H6 ED6 16 ED6 H7 H2 H 0 1 N N N N N N 0.595 -40.675 -19.817 4.669 0.139 -0.914 H7 ED6 17 ED6 H1 H3 H 0 1 N N N N N N 0.437 -38.629 -16.610 0.231 -0.213 1.218 H1 ED6 18 ED6 H5 H4 H 0 1 N N N N N N 1.692 -39.787 -14.559 -1.539 1.386 1.686 H5 ED6 19 ED6 H61 H5 H 0 1 N N N N N N 3.876 -40.033 -13.461 -2.409 2.942 -0.792 H61 ED6 20 ED6 H62 H6 H 0 1 N N N N N N 3.806 -40.934 -15.014 -3.126 3.088 0.830 H62 ED6 21 ED6 H63 H7 H 0 1 N N N N N N 4.681 -39.368 -14.923 -1.441 3.591 0.554 H63 ED6 22 ED6 H4 H8 H 0 1 N N N N N N 2.416 -38.011 -13.134 -3.718 0.635 0.810 H4 ED6 23 ED6 HO4 H9 H 0 1 N Y N N N N 3.866 -36.380 -13.991 -3.438 1.452 -1.418 HO4 ED6 24 ED6 H3 H10 H 0 1 N N N N N N 0.520 -37.310 -14.378 -2.131 -1.085 1.581 H3 ED6 25 ED6 HO3 H11 H 0 1 N Y N N N N 1.707 -35.650 -13.187 -3.026 -2.843 0.235 HO3 ED6 26 ED6 H2 H12 H 0 1 N N N N N N 2.427 -36.317 -16.504 -1.189 -1.129 -1.324 H2 ED6 27 ED6 HO2 H13 H 0 1 N Y N N N N 0.410 -35.152 -16.169 0.353 -2.695 -0.384 HO2 ED6 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ED6 O1P PB DOUB N N 1 ED6 PB O2P SING N N 2 ED6 PB O3P SING N N 3 ED6 PB O1 SING N N 4 ED6 O1 C1 SING N N 5 ED6 C1 O5 SING N N 6 ED6 C1 C2 SING N N 7 ED6 O2 C2 SING N N 8 ED6 O5 C5 SING N N 9 ED6 C2 C3 SING N N 10 ED6 C5 C6 SING N N 11 ED6 C5 C4 SING N N 12 ED6 C3 C4 SING N N 13 ED6 C3 O3 SING N N 14 ED6 O4 C4 SING N N 15 ED6 O3P H6 SING N N 16 ED6 O2P H7 SING N N 17 ED6 C1 H1 SING N N 18 ED6 C5 H5 SING N N 19 ED6 C6 H61 SING N N 20 ED6 C6 H62 SING N N 21 ED6 C6 H63 SING N N 22 ED6 C4 H4 SING N N 23 ED6 O4 HO4 SING N N 24 ED6 C3 H3 SING N N 25 ED6 O3 HO3 SING N N 26 ED6 C2 H2 SING N N 27 ED6 O2 HO2 SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ED6 SMILES ACDLabs 12.01 "OP(O)(OC1OC(C)C(O)C(O)C1O)=O" ED6 InChI InChI 1.03 "InChI=1S/C6H13O8P/c1-2-3(7)4(8)5(9)6(13-2)14-15(10,11)12/h2-9H,1H3,(H2,10,11,12)/t2-,3+,4+,5-,6+/m0/s1" ED6 InChIKey InChI 1.03 PTVXQARCLQPGIR-SXUWKVJYSA-N ED6 SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1O[C@H](O[P](O)(O)=O)[C@@H](O)[C@H](O)[C@@H]1O" ED6 SMILES CACTVS 3.385 "C[CH]1O[CH](O[P](O)(O)=O)[CH](O)[CH](O)[CH]1O" ED6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H]([C@H]([C@@H]([C@H](O1)OP(=O)(O)O)O)O)O" ED6 SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)OP(=O)(O)O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ED6 "SYSTEMATIC NAME" ACDLabs 12.01 6-deoxy-1-O-phosphono-beta-L-galactopyranose ED6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},4~{R},5~{S},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl] dihydrogen phosphate" # _pdbx_chem_comp_related.comp_id ED6 _pdbx_chem_comp_related.related_comp_id FUL _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 ED6 O1 FUL O1 "Carbohydrate core" 2 ED6 C1 FUL C1 "Carbohydrate core" 3 ED6 O5 FUL O5 "Carbohydrate core" 4 ED6 C5 FUL C5 "Carbohydrate core" 5 ED6 C6 FUL C6 "Carbohydrate core" 6 ED6 C4 FUL C4 "Carbohydrate core" 7 ED6 O4 FUL O4 "Carbohydrate core" 8 ED6 C3 FUL C3 "Carbohydrate core" 9 ED6 O3 FUL O3 "Carbohydrate core" 10 ED6 C2 FUL C2 "Carbohydrate core" 11 ED6 O2 FUL O2 "Carbohydrate core" 12 ED6 H1 FUL H1 "Carbohydrate core" 13 ED6 H5 FUL H5 "Carbohydrate core" 14 ED6 H61 FUL H61 "Carbohydrate core" 15 ED6 H62 FUL H62 "Carbohydrate core" 16 ED6 H63 FUL H63 "Carbohydrate core" 17 ED6 H4 FUL H4 "Carbohydrate core" 18 ED6 HO4 FUL HO4 "Carbohydrate core" 19 ED6 H3 FUL H3 "Carbohydrate core" 20 ED6 HO3 FUL HO3 "Carbohydrate core" 21 ED6 H2 FUL H2 "Carbohydrate core" 22 ED6 HO2 FUL HO2 "Carbohydrate core" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ED6 "Create component" 2019-12-11 PDBJ ED6 "Modify atom id" 2020-07-23 RCSB ED6 "Initial release" 2025-03-05 RCSB # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support ED6 "CARBOHYDRATE ISOMER" L PDB ? ED6 "CARBOHYDRATE RING" pyranose PDB ? ED6 "CARBOHYDRATE ANOMER" beta PDB ? ED6 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? #