data_ED8 # _chem_comp.id ED8 _chem_comp.name "5-{6-[(1-methylpiperidin-4-yl)oxy]-1H-benzimidazol-1-yl}-3-{[2-(trifluoromethyl)benzyl]oxy}thiophene-2-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H25 F3 N4 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-08-05 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 530.562 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ED8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2XNO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ED8 C01 C01 C 0 1 N N N -29.666 14.877 23.153 5.285 -4.378 2.004 C01 ED8 1 ED8 N02 N02 N 0 1 N N N -28.990 14.329 21.992 5.463 -2.922 1.929 N02 ED8 2 ED8 C03 C03 C 0 1 N N N -27.576 14.028 22.278 6.270 -2.551 0.760 C03 ED8 3 ED8 C04 C04 C 0 1 N N N -26.884 13.077 21.267 6.556 -1.048 0.792 C04 ED8 4 ED8 C05 C05 C 0 1 N N N -27.672 11.777 21.051 5.232 -0.280 0.785 C05 ED8 5 ED8 O06 O06 O 0 1 N N N -27.406 10.997 19.906 5.491 1.122 0.873 O06 ED8 6 ED8 C07 C07 C 0 1 Y N N -26.972 9.697 20.197 4.540 1.958 0.380 C07 ED8 7 ED8 C08 C08 C 0 1 Y N N -27.284 9.035 21.389 4.779 3.329 0.333 C08 ED8 8 ED8 C09 C09 C 0 1 Y N N -26.827 7.645 21.579 3.834 4.183 -0.159 C09 ED8 9 ED8 C10 C10 C 0 1 Y N N -26.062 6.986 20.544 2.614 3.683 -0.622 C10 ED8 10 ED8 N11 N11 N 0 1 Y N N -25.498 5.705 20.443 1.506 4.264 -1.153 N11 ED8 11 ED8 C12 C12 C 0 1 Y N N -24.857 5.587 19.207 0.622 3.352 -1.430 C12 ED8 12 ED8 N13 N13 N 0 1 Y N N -25.093 6.779 18.514 1.101 2.119 -1.094 N13 ED8 13 ED8 C14 C14 C 0 1 Y N N -24.578 7.194 17.323 0.436 0.905 -1.245 C14 ED8 14 ED8 C15 C15 C 0 1 Y N N -25.341 8.330 16.519 -0.821 0.656 -0.827 C15 ED8 15 ED8 C16 C16 C 0 1 Y N N -24.395 8.693 15.069 -1.278 -0.616 -1.082 C16 ED8 16 ED8 O17 O17 O 0 1 N N N -24.815 9.711 14.194 -2.520 -1.036 -0.729 O17 ED8 17 ED8 C18 C18 C 0 1 N N N -25.947 10.464 14.558 -3.361 -0.090 -0.066 C18 ED8 18 ED8 C19 C19 C 0 1 Y N N -25.815 11.557 15.616 -4.689 -0.730 0.245 C19 ED8 19 ED8 C20 C20 C 0 1 Y N N -24.530 12.133 15.822 -4.924 -2.044 -0.113 C20 ED8 20 ED8 C21 C21 C 0 1 Y N N -24.304 13.166 16.815 -6.143 -2.632 0.172 C21 ED8 21 ED8 C22 C22 C 0 1 Y N N -25.469 13.645 17.644 -7.126 -1.905 0.817 C22 ED8 22 ED8 C23 C23 C 0 1 Y N N -26.749 13.090 17.452 -6.891 -0.591 1.176 C23 ED8 23 ED8 C24 C24 C 0 1 Y N N -26.984 12.050 16.450 -5.671 -0.005 0.895 C24 ED8 24 ED8 C25 C25 C 0 1 N N N -28.387 11.531 16.328 -5.413 1.426 1.291 C25 ED8 25 ED8 F26 F26 F 0 1 N N N -29.227 12.302 17.029 -4.321 1.478 2.164 F26 ED8 26 ED8 F27 F27 F 0 1 N N N -28.811 11.519 15.064 -5.133 2.183 0.149 F27 ED8 27 ED8 F28 F28 F 0 1 N N N -28.437 10.297 16.838 -6.545 1.945 1.929 F28 ED8 28 ED8 C29 C29 C 0 1 Y N N -23.140 7.791 15.094 -0.372 -1.424 -1.723 C29 ED8 29 ED8 C30 C30 C 0 1 N N N -22.071 7.682 14.035 -0.598 -2.769 -2.095 C30 ED8 30 ED8 N31 N31 N 0 1 N N N -22.258 8.339 12.776 0.370 -3.466 -2.723 N31 ED8 31 ED8 O32 O32 O 0 1 N N N -21.220 6.811 14.149 -1.667 -3.298 -1.849 O32 ED8 32 ED8 S33 S33 S 0 1 Y N N -23.158 6.774 16.555 1.110 -0.524 -2.016 S33 ED8 33 ED8 C34 C34 C 0 1 Y N N -25.765 7.655 19.360 2.370 2.300 -0.576 C34 ED8 34 ED8 C35 C35 C 0 1 Y N N -26.214 9.027 19.156 3.341 1.443 -0.078 C35 ED8 35 ED8 C36 C36 C 0 1 N N N -29.092 11.844 21.641 4.390 -0.721 1.986 C36 ED8 36 ED8 C37 C37 C 0 1 N N N -29.735 13.234 21.373 4.166 -2.233 1.919 C37 ED8 37 ED8 H01 H01 H 0 1 N N N -29.064 15.694 23.577 6.260 -4.859 2.086 H01 ED8 38 ED8 H01A H01A H 0 0 N N N -30.651 15.265 22.854 4.683 -4.626 2.879 H01A ED8 39 ED8 H01B H01B H 0 0 N N N -29.796 14.088 23.908 4.780 -4.730 1.105 H01B ED8 40 ED8 H03 H03 H 0 1 N N N -27.025 14.980 22.269 7.211 -3.100 0.779 H03 ED8 41 ED8 H03A H03A H 0 0 N N N -27.532 13.550 23.268 5.725 -2.796 -0.152 H03A ED8 42 ED8 H04 H04 H 0 1 N N N -26.798 13.597 20.302 7.114 -0.803 1.696 H04 ED8 43 ED8 H04A H04A H 0 0 N N N -25.887 12.820 21.655 7.143 -0.770 -0.083 H04A ED8 44 ED8 H05 H05 H 0 1 N N N -27.182 11.028 21.690 4.691 -0.494 -0.137 H05 ED8 45 ED8 H08 H08 H 0 1 N N N -27.852 9.535 22.160 5.720 3.720 0.690 H08 ED8 46 ED8 H09 H09 H 0 1 N N N -27.064 7.119 22.492 4.030 5.245 -0.190 H09 ED8 47 ED8 H12 H12 H 0 1 N N N -24.289 4.739 18.855 -0.350 3.542 -1.861 H12 ED8 48 ED8 H15 H15 H 0 1 N N N -26.271 8.798 16.806 -1.424 1.400 -0.329 H15 ED8 49 ED8 H18 H18 H 0 1 N N N -26.292 10.963 13.641 -2.886 0.231 0.861 H18 ED8 50 ED8 H18A H18A H 0 0 N N N -26.683 9.745 14.948 -3.517 0.774 -0.713 H18A ED8 51 ED8 H20 H20 H 0 1 N N N -23.700 11.791 15.222 -4.156 -2.612 -0.617 H20 ED8 52 ED8 H21 H21 H 0 1 N N N -23.319 13.585 16.958 -6.326 -3.658 -0.109 H21 ED8 53 ED8 H22 H22 H 0 1 N N N -25.321 14.415 18.387 -8.078 -2.364 1.040 H22 ED8 54 ED8 H23 H23 H 0 1 N N N -27.573 13.439 18.056 -7.659 -0.023 1.679 H23 ED8 55 ED8 HN31 HN31 H 0 0 N N N -21.693 8.085 11.991 1.221 -3.045 -2.919 HN31 ED8 56 ED8 HN3A HN3A H 0 0 N N N -22.954 9.051 12.682 0.215 -4.389 -2.979 HN3A ED8 57 ED8 H35 H35 H 0 1 N N N -25.984 9.542 18.235 3.159 0.379 -0.044 H35 ED8 58 ED8 H36 H36 H 0 1 N N N -29.712 11.065 21.173 4.913 -0.471 2.909 H36 ED8 59 ED8 H36A H36A H 0 0 N N N -29.038 11.677 22.727 3.428 -0.209 1.963 H36A ED8 60 ED8 H37 H37 H 0 1 N N N -30.755 13.231 21.786 3.630 -2.481 1.002 H37 ED8 61 ED8 H37A H37A H 0 0 N N N -29.760 13.402 20.286 3.579 -2.552 2.780 H37A ED8 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ED8 N02 C01 SING N N 1 ED8 C01 H01 SING N N 2 ED8 C01 H01A SING N N 3 ED8 C01 H01B SING N N 4 ED8 C37 N02 SING N N 5 ED8 N02 C03 SING N N 6 ED8 C04 C03 SING N N 7 ED8 C03 H03 SING N N 8 ED8 C03 H03A SING N N 9 ED8 C05 C04 SING N N 10 ED8 C04 H04 SING N N 11 ED8 C04 H04A SING N N 12 ED8 O06 C05 SING N N 13 ED8 C05 C36 SING N N 14 ED8 C05 H05 SING N N 15 ED8 O06 C07 SING N N 16 ED8 C35 C07 DOUB Y N 17 ED8 C07 C08 SING Y N 18 ED8 C08 C09 DOUB Y N 19 ED8 C08 H08 SING N N 20 ED8 C10 C09 SING Y N 21 ED8 C09 H09 SING N N 22 ED8 C34 C10 DOUB Y N 23 ED8 N11 C10 SING Y N 24 ED8 C12 N11 DOUB Y N 25 ED8 N13 C12 SING Y N 26 ED8 C12 H12 SING N N 27 ED8 C14 N13 SING Y N 28 ED8 N13 C34 SING Y N 29 ED8 C15 C14 DOUB Y N 30 ED8 S33 C14 SING Y N 31 ED8 C16 C15 SING Y N 32 ED8 C15 H15 SING N N 33 ED8 O17 C16 SING N N 34 ED8 C16 C29 DOUB Y N 35 ED8 O17 C18 SING N N 36 ED8 C18 C19 SING N N 37 ED8 C18 H18 SING N N 38 ED8 C18 H18A SING N N 39 ED8 C19 C20 DOUB Y N 40 ED8 C19 C24 SING Y N 41 ED8 C20 C21 SING Y N 42 ED8 C20 H20 SING N N 43 ED8 C21 C22 DOUB Y N 44 ED8 C21 H21 SING N N 45 ED8 C23 C22 SING Y N 46 ED8 C22 H22 SING N N 47 ED8 C24 C23 DOUB Y N 48 ED8 C23 H23 SING N N 49 ED8 C25 C24 SING N N 50 ED8 F27 C25 SING N N 51 ED8 C25 F28 SING N N 52 ED8 C25 F26 SING N N 53 ED8 C30 C29 SING N N 54 ED8 C29 S33 SING Y N 55 ED8 N31 C30 SING N N 56 ED8 C30 O32 DOUB N N 57 ED8 N31 HN31 SING N N 58 ED8 N31 HN3A SING N N 59 ED8 C35 C34 SING Y N 60 ED8 C35 H35 SING N N 61 ED8 C37 C36 SING N N 62 ED8 C36 H36 SING N N 63 ED8 C36 H36A SING N N 64 ED8 C37 H37 SING N N 65 ED8 C37 H37A SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ED8 SMILES ACDLabs 12.01 "FC(F)(F)c1ccccc1COc5c(sc(n4cnc3ccc(OC2CCN(C)CC2)cc34)c5)C(=O)N" ED8 SMILES_CANONICAL CACTVS 3.370 "CN1CCC(CC1)Oc2ccc3ncn(c4sc(C(N)=O)c(OCc5ccccc5C(F)(F)F)c4)c3c2" ED8 SMILES CACTVS 3.370 "CN1CCC(CC1)Oc2ccc3ncn(c4sc(C(N)=O)c(OCc5ccccc5C(F)(F)F)c4)c3c2" ED8 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CN1CCC(CC1)Oc2ccc3c(c2)n(cn3)c4cc(c(s4)C(=O)N)OCc5ccccc5C(F)(F)F" ED8 SMILES "OpenEye OEToolkits" 1.7.0 "CN1CCC(CC1)Oc2ccc3c(c2)n(cn3)c4cc(c(s4)C(=O)N)OCc5ccccc5C(F)(F)F" ED8 InChI InChI 1.03 "InChI=1S/C26H25F3N4O3S/c1-32-10-8-17(9-11-32)36-18-6-7-20-21(12-18)33(15-31-20)23-13-22(24(37-23)25(30)34)35-14-16-4-2-3-5-19(16)26(27,28)29/h2-7,12-13,15,17H,8-11,14H2,1H3,(H2,30,34)" ED8 InChIKey InChI 1.03 FNHUNERGHGEZMB-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ED8 "SYSTEMATIC NAME" ACDLabs 12.01 "5-{6-[(1-methylpiperidin-4-yl)oxy]-1H-benzimidazol-1-yl}-3-{[2-(trifluoromethyl)benzyl]oxy}thiophene-2-carboxamide" ED8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "5-[6-(1-methylpiperidin-4-yl)oxybenzimidazol-1-yl]-3-[[2-(trifluoromethyl)phenyl]methoxy]thiophene-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ED8 "Create component" 2010-08-05 EBI ED8 "Modify aromatic_flag" 2011-06-04 RCSB ED8 "Modify descriptor" 2011-06-04 RCSB #