data_EDK # _chem_comp.id EDK _chem_comp.name "(2~{S})-3-[4-[2-[methyl(pyridin-2-yl)amino]ethoxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H29 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-03-15 _chem_comp.pdbx_modified_date 2019-02-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 495.569 _chem_comp.one_letter_code ? _chem_comp.three_letter_code EDK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6FZF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal EDK O3 O1 O 0 1 N N N -21.265 25.863 0.057 -3.526 -4.319 0.817 O3 EDK 1 EDK C4 C1 C 0 1 Y N N -16.204 29.174 -2.293 1.175 0.344 1.740 C4 EDK 2 EDK C5 C2 C 0 1 Y N N -17.203 28.242 -2.081 -0.065 -0.257 1.841 C5 EDK 3 EDK C6 C3 C 0 1 Y N N -18.508 28.505 -2.456 -0.192 -1.619 1.639 C6 EDK 4 EDK N1 N1 N 0 1 N N N -19.464 28.025 0.289 -2.499 -0.881 -0.022 N1 EDK 5 EDK C7 C4 C 0 1 N N N -19.610 27.522 -2.137 -1.546 -2.272 1.750 C7 EDK 6 EDK C8 C5 C 0 1 N N S -20.356 27.888 -0.848 -2.230 -2.264 0.382 C8 EDK 7 EDK N2 N2 N 0 1 Y N N -15.692 35.639 -1.667 6.536 0.530 -1.591 N2 EDK 8 EDK C9 C6 C 0 1 Y N N -19.855 28.520 1.523 -2.618 -0.561 -1.367 C9 EDK 9 EDK C10 C7 C 0 1 Y N N -18.847 28.939 2.416 -2.758 0.779 -1.765 C10 EDK 10 EDK C11 C8 C 0 1 Y N N -19.220 29.620 3.579 -2.877 1.087 -3.123 C11 EDK 11 EDK C12 C9 C 0 1 Y N N -20.553 29.857 3.859 -2.856 0.078 -4.061 C12 EDK 12 EDK C13 C10 C 0 1 Y N N -21.532 29.429 2.993 -2.718 -1.243 -3.665 C13 EDK 13 EDK C14 C11 C 0 1 Y N N -21.192 28.769 1.826 -2.593 -1.564 -2.328 C14 EDK 14 EDK C15 C12 C 0 1 N N N -17.394 28.684 2.146 -2.780 1.853 -0.757 C15 EDK 15 EDK C22 C13 C 0 1 N N N -21.439 26.856 -0.610 -3.528 -3.024 0.464 C22 EDK 16 EDK O2 O2 O 0 1 N N N -22.547 27.165 -1.233 -4.571 -2.469 0.212 O2 EDK 17 EDK C16 C14 C 0 1 Y N N -16.342 29.138 3.095 -3.978 2.052 0.086 C16 EDK 18 EDK C21 C15 C 0 1 Y N N -15.252 29.861 2.618 -5.129 1.295 -0.143 C21 EDK 19 EDK C20 C16 C 0 1 Y N N -14.228 30.235 3.470 -6.244 1.485 0.647 C20 EDK 20 EDK C19 C17 C 0 1 Y N N -14.281 29.899 4.807 -6.223 2.424 1.664 C19 EDK 21 EDK C18 C18 C 0 1 Y N N -15.357 29.190 5.294 -5.085 3.177 1.896 C18 EDK 22 EDK C17 C19 C 0 1 Y N N -16.381 28.808 4.447 -3.962 2.993 1.117 C17 EDK 23 EDK O1 O3 O 0 1 N N N -17.059 28.105 1.119 -1.812 2.576 -0.617 O1 EDK 24 EDK C23 C20 C 0 1 Y N N -18.797 29.704 -3.076 0.920 -2.382 1.336 C23 EDK 25 EDK C24 C21 C 0 1 Y N N -17.805 30.642 -3.297 2.161 -1.786 1.234 C24 EDK 26 EDK C3 C22 C 0 1 Y N N -16.511 30.381 -2.887 2.291 -0.419 1.430 C3 EDK 27 EDK O O4 O 0 1 N N N -15.540 31.343 -2.922 3.512 0.171 1.330 O EDK 28 EDK C2 C23 C 0 1 N N N -15.914 32.655 -3.362 3.570 1.582 1.545 C2 EDK 29 EDK C1 C24 C 0 1 N N N -14.671 33.494 -3.251 5.015 2.062 1.392 C1 EDK 30 EDK N N3 N 0 1 N N N -14.311 33.699 -1.849 5.451 1.862 0.008 N EDK 31 EDK C C25 C 0 1 N N N -13.392 32.785 -1.184 5.253 2.923 -0.983 C EDK 32 EDK C25 C26 C 0 1 Y N N -14.927 34.722 -1.060 6.054 0.667 -0.366 C25 EDK 33 EDK C29 C27 C 0 1 Y N N -14.652 34.727 0.305 6.146 -0.375 0.552 C29 EDK 34 EDK C28 C28 C 0 1 Y N N -15.193 35.751 1.064 6.748 -1.559 0.167 C28 EDK 35 EDK C27 C29 C 0 1 Y N N -15.978 36.710 0.465 7.240 -1.662 -1.128 C27 EDK 36 EDK C26 C30 C 0 1 Y N N -16.202 36.613 -0.897 7.116 -0.588 -1.986 C26 EDK 37 EDK H1 H1 H 0 1 N N N -22.058 25.340 0.060 -4.383 -4.765 0.857 H1 EDK 38 EDK H2 H2 H 0 1 N N N -15.189 28.958 -1.995 1.274 1.408 1.897 H2 EDK 39 EDK H3 H3 H 0 1 N N N -16.961 27.297 -1.617 -0.935 0.337 2.079 H3 EDK 40 EDK H4 H4 H 0 1 N N N -19.106 27.108 0.465 -2.593 -0.190 0.652 H4 EDK 41 EDK H5 H5 H 0 1 N N N -20.327 27.511 -2.971 -1.426 -3.301 2.090 H5 EDK 42 EDK H6 H6 H 0 1 N N N -19.169 26.521 -2.019 -2.158 -1.722 2.465 H6 EDK 43 EDK H7 H7 H 0 1 N N N -20.851 28.855 -1.019 -1.578 -2.736 -0.353 H7 EDK 44 EDK H8 H8 H 0 1 N N N -18.460 29.964 4.265 -2.986 2.115 -3.438 H8 EDK 45 EDK H9 H9 H 0 1 N N N -20.827 30.381 4.763 -2.949 0.317 -5.109 H9 EDK 46 EDK H10 H10 H 0 1 N N N -22.571 29.609 3.225 -2.703 -2.027 -4.408 H10 EDK 47 EDK H11 H11 H 0 1 N N N -21.966 28.445 1.146 -2.481 -2.595 -2.029 H11 EDK 48 EDK H12 H12 H 0 1 N N N -15.205 30.132 1.574 -5.147 0.563 -0.937 H12 EDK 49 EDK H13 H13 H 0 1 N N N -13.385 30.791 3.087 -7.135 0.901 0.472 H13 EDK 50 EDK H14 H14 H 0 1 N N N -13.481 30.191 5.471 -7.099 2.569 2.280 H14 EDK 51 EDK H15 H15 H 0 1 N N N -15.401 28.931 6.342 -5.076 3.908 2.691 H15 EDK 52 EDK H16 H16 H 0 1 N N N -17.218 28.249 4.838 -3.074 3.579 1.302 H16 EDK 53 EDK H17 H17 H 0 1 N N N -19.809 29.912 -3.392 0.817 -3.446 1.178 H17 EDK 54 EDK H18 H18 H 0 1 N N N -18.040 31.575 -3.788 3.030 -2.383 0.997 H18 EDK 55 EDK H19 H19 H 0 1 N N N -16.709 33.062 -2.720 2.940 2.088 0.814 H19 EDK 56 EDK H20 H20 H 0 1 N N N -16.264 32.624 -4.405 3.216 1.811 2.550 H20 EDK 57 EDK H21 H21 H 0 1 N N N -13.843 32.984 -3.766 5.075 3.121 1.643 H21 EDK 58 EDK H22 H22 H 0 1 N N N -14.851 34.471 -3.724 5.660 1.493 2.062 H22 EDK 59 EDK H23 H23 H 0 1 N N N -13.247 33.104 -0.141 6.124 3.578 -0.995 H23 EDK 60 EDK H24 H24 H 0 1 N N N -13.810 31.768 -1.202 5.119 2.479 -1.969 H24 EDK 61 EDK H25 H25 H 0 1 N N N -12.424 32.793 -1.707 4.367 3.503 -0.722 H25 EDK 62 EDK H26 H26 H 0 1 N N N -14.039 33.960 0.755 5.752 -0.261 1.551 H26 EDK 63 EDK H27 H27 H 0 1 N N N -14.999 35.797 2.125 6.833 -2.385 0.858 H27 EDK 64 EDK H28 H28 H 0 1 N N N -16.407 37.516 1.042 7.716 -2.573 -1.459 H28 EDK 65 EDK H29 H29 H 0 1 N N N -16.822 37.363 -1.367 7.497 -0.664 -2.993 H29 EDK 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EDK C2 C1 SING N N 1 EDK C2 O SING N N 2 EDK C24 C23 DOUB Y N 3 EDK C24 C3 SING Y N 4 EDK C1 N SING N N 5 EDK C23 C6 SING Y N 6 EDK O C3 SING N N 7 EDK C3 C4 DOUB Y N 8 EDK C6 C7 SING N N 9 EDK C6 C5 DOUB Y N 10 EDK C4 C5 SING Y N 11 EDK C7 C8 SING N N 12 EDK N C SING N N 13 EDK N C25 SING N N 14 EDK N2 C25 DOUB Y N 15 EDK N2 C26 SING Y N 16 EDK O2 C22 DOUB N N 17 EDK C25 C29 SING Y N 18 EDK C26 C27 DOUB Y N 19 EDK C8 C22 SING N N 20 EDK C8 N1 SING N N 21 EDK C22 O3 SING N N 22 EDK N1 C9 SING N N 23 EDK C29 C28 DOUB Y N 24 EDK C27 C28 SING Y N 25 EDK O1 C15 DOUB N N 26 EDK C9 C14 DOUB Y N 27 EDK C9 C10 SING Y N 28 EDK C14 C13 SING Y N 29 EDK C15 C10 SING N N 30 EDK C15 C16 SING N N 31 EDK C10 C11 DOUB Y N 32 EDK C21 C16 DOUB Y N 33 EDK C21 C20 SING Y N 34 EDK C13 C12 DOUB Y N 35 EDK C16 C17 SING Y N 36 EDK C20 C19 DOUB Y N 37 EDK C11 C12 SING Y N 38 EDK C17 C18 DOUB Y N 39 EDK C19 C18 SING Y N 40 EDK O3 H1 SING N N 41 EDK C4 H2 SING N N 42 EDK C5 H3 SING N N 43 EDK N1 H4 SING N N 44 EDK C7 H5 SING N N 45 EDK C7 H6 SING N N 46 EDK C8 H7 SING N N 47 EDK C11 H8 SING N N 48 EDK C12 H9 SING N N 49 EDK C13 H10 SING N N 50 EDK C14 H11 SING N N 51 EDK C21 H12 SING N N 52 EDK C20 H13 SING N N 53 EDK C19 H14 SING N N 54 EDK C18 H15 SING N N 55 EDK C17 H16 SING N N 56 EDK C23 H17 SING N N 57 EDK C24 H18 SING N N 58 EDK C2 H19 SING N N 59 EDK C2 H20 SING N N 60 EDK C1 H21 SING N N 61 EDK C1 H22 SING N N 62 EDK C H23 SING N N 63 EDK C H24 SING N N 64 EDK C H25 SING N N 65 EDK C29 H26 SING N N 66 EDK C28 H27 SING N N 67 EDK C27 H28 SING N N 68 EDK C26 H29 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor EDK InChI InChI 1.03 "InChI=1S/C30H29N3O4/c1-33(28-13-7-8-18-31-28)19-20-37-24-16-14-22(15-17-24)21-27(30(35)36)32-26-12-6-5-11-25(26)29(34)23-9-3-2-4-10-23/h2-18,27,32H,19-21H2,1H3,(H,35,36)/t27-/m0/s1" EDK InChIKey InChI 1.03 QTQMRBZOBKYXCG-MHZLTWQESA-N EDK SMILES_CANONICAL CACTVS 3.385 "CN(CCOc1ccc(C[C@H](Nc2ccccc2C(=O)c3ccccc3)C(O)=O)cc1)c4ccccn4" EDK SMILES CACTVS 3.385 "CN(CCOc1ccc(C[CH](Nc2ccccc2C(=O)c3ccccc3)C(O)=O)cc1)c4ccccn4" EDK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CN(CCOc1ccc(cc1)C[C@@H](C(=O)O)Nc2ccccc2C(=O)c3ccccc3)c4ccccn4" EDK SMILES "OpenEye OEToolkits" 2.0.6 "CN(CCOc1ccc(cc1)CC(C(=O)O)Nc2ccccc2C(=O)c3ccccc3)c4ccccn4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier EDK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-3-[4-[2-[methyl(pyridin-2-yl)amino]ethoxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site EDK "Create component" 2018-03-15 EBI EDK "Initial release" 2019-02-13 RCSB #