data_EDP # _chem_comp.id EDP _chem_comp.name "5-ethyl-5-[(2R)-pentan-2-yl]-2-thioxodihydropyrimidine-4,6(1H,5H)-dione" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H18 N2 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Thiopental _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-04-05 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 242.338 _chem_comp.one_letter_code ? _chem_comp.three_letter_code EDP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3RD0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal EDP C1 C1 C 0 1 N N N 34.495 -0.226 34.980 -0.288 -0.579 0.107 C1 EDP 1 EDP C2 C2 C 0 1 N N N 34.354 1.131 34.340 0.140 0.652 0.883 C2 EDP 2 EDP N3 N3 N 0 1 N N N 34.758 1.362 33.084 1.411 1.079 0.726 N3 EDP 3 EDP C4 C4 C 0 1 N N N 35.316 0.413 32.326 2.274 0.451 -0.081 C4 EDP 4 EDP N5 N5 N 0 1 N N N 35.498 -0.825 32.790 1.989 -0.638 -0.804 N5 EDP 5 EDP C6 C6 C 0 1 N N N 35.143 -1.185 34.027 0.771 -1.209 -0.779 C6 EDP 6 EDP O7 O7 O 0 1 N N N 35.340 -2.363 34.398 0.526 -2.197 -1.439 O7 EDP 7 EDP O8 O8 O 0 1 N N N 33.849 2.081 34.975 -0.632 1.231 1.618 O8 EDP 8 EDP S9 S9 S 0 1 N N N 35.774 0.765 30.838 3.858 1.089 -0.197 S9 EDP 9 EDP C12 C12 C 0 1 N N N 35.392 -0.138 36.210 -0.759 -1.635 1.109 C12 EDP 10 EDP C13 C13 C 0 1 N N N 34.670 -0.548 37.477 0.410 -2.042 2.008 C13 EDP 11 EDP C14 C14 C 0 1 N N R 33.115 -0.799 35.337 -1.479 -0.197 -0.774 C14 EDP 12 EDP C15 C15 C 0 1 N N N 32.582 -1.709 34.233 -1.085 0.961 -1.691 C15 EDP 13 EDP C16 C16 C 0 1 N N N 32.087 0.272 35.696 -2.651 0.230 0.112 C16 EDP 14 EDP C17 C17 C 0 1 N N N 30.682 -0.297 35.866 -3.881 0.493 -0.760 C17 EDP 15 EDP C18 C18 C 0 1 N N N 29.774 0.133 34.731 -5.052 0.920 0.126 C18 EDP 16 EDP HN3 HN3 H 0 1 N N N 34.638 2.277 32.700 1.707 1.864 1.212 HN3 EDP 17 EDP HN5 HN5 H 0 1 N N N 35.915 -1.508 32.190 2.681 -1.025 -1.364 HN5 EDP 18 EDP H12 H12 H 0 1 N N N 36.252 -0.808 36.065 -1.562 -1.222 1.720 H12 EDP 19 EDP H12A H12A H 0 0 N N N 35.732 0.902 36.322 -1.125 -2.509 0.571 H12A EDP 20 EDP H13 H13 H 0 1 N N N 35.356 -0.468 38.333 1.212 -2.455 1.397 H13 EDP 21 EDP H13A H13A H 0 0 N N N 33.806 0.114 37.637 0.776 -1.168 2.547 H13A EDP 22 EDP H13B H13B H 0 0 N N N 34.323 -1.588 37.381 0.073 -2.794 2.722 H13B EDP 23 EDP H14 H14 H 0 1 N N N 33.271 -1.401 36.244 -1.775 -1.055 -1.378 H14 EDP 24 EDP H15 H15 H 0 1 N N N 31.595 -2.099 34.523 -0.713 1.791 -1.090 H15 EDP 25 EDP H15A H15A H 0 0 N N N 32.489 -1.136 33.299 -0.305 0.632 -2.378 H15A EDP 26 EDP H15B H15B H 0 0 N N N 33.278 -2.547 34.081 -1.956 1.287 -2.260 H15B EDP 27 EDP H16 H16 H 0 1 N N N 32.390 0.741 36.644 -2.875 -0.562 0.827 H16 EDP 28 EDP H16A H16A H 0 0 N N N 32.065 1.018 34.888 -2.387 1.140 0.651 H16A EDP 29 EDP H17 H17 H 0 1 N N N 30.742 -1.395 35.878 -3.657 1.285 -1.474 H17 EDP 30 EDP H17A H17A H 0 0 N N N 30.263 0.068 36.815 -4.145 -0.417 -1.298 H17A EDP 31 EDP H18 H18 H 0 1 N N N 28.771 -0.292 34.882 -4.788 1.830 0.665 H18 EDP 32 EDP H18A H18A H 0 0 N N N 29.707 1.231 34.711 -5.928 1.107 -0.495 H18A EDP 33 EDP H18B H18B H 0 0 N N N 30.185 -0.227 33.776 -5.276 0.128 0.841 H18B EDP 34 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EDP C6 C1 SING N N 1 EDP C2 C1 SING N N 2 EDP C1 C14 SING N N 3 EDP C1 C12 SING N N 4 EDP N3 C2 SING N N 5 EDP C2 O8 DOUB N N 6 EDP C4 N3 SING N N 7 EDP N3 HN3 SING N N 8 EDP S9 C4 DOUB N N 9 EDP C4 N5 SING N N 10 EDP N5 C6 SING N N 11 EDP N5 HN5 SING N N 12 EDP C6 O7 DOUB N N 13 EDP C12 C13 SING N N 14 EDP C12 H12 SING N N 15 EDP C12 H12A SING N N 16 EDP C13 H13 SING N N 17 EDP C13 H13A SING N N 18 EDP C13 H13B SING N N 19 EDP C15 C14 SING N N 20 EDP C14 C16 SING N N 21 EDP C14 H14 SING N N 22 EDP C15 H15 SING N N 23 EDP C15 H15A SING N N 24 EDP C15 H15B SING N N 25 EDP C16 C17 SING N N 26 EDP C16 H16 SING N N 27 EDP C16 H16A SING N N 28 EDP C18 C17 SING N N 29 EDP C17 H17 SING N N 30 EDP C17 H17A SING N N 31 EDP C18 H18 SING N N 32 EDP C18 H18A SING N N 33 EDP C18 H18B SING N N 34 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor EDP SMILES ACDLabs 12.01 "O=C1NC(=S)NC(=O)C1(C(C)CCC)CC" EDP SMILES_CANONICAL CACTVS 3.370 "CCC[C@@H](C)C1(CC)C(=O)NC(=S)NC1=O" EDP SMILES CACTVS 3.370 "CCC[CH](C)C1(CC)C(=O)NC(=S)NC1=O" EDP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CCC[C@@H](C)C1(C(=O)NC(=S)NC1=O)CC" EDP SMILES "OpenEye OEToolkits" 1.7.0 "CCCC(C)C1(C(=O)NC(=S)NC1=O)CC" EDP InChI InChI 1.03 "InChI=1S/C11H18N2O2S/c1-4-6-7(3)11(5-2)8(14)12-10(16)13-9(11)15/h7H,4-6H2,1-3H3,(H2,12,13,14,15,16)/t7-/m1/s1" EDP InChIKey InChI 1.03 IUJDSEJGGMCXSG-SSDOTTSWSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier EDP "SYSTEMATIC NAME" ACDLabs 12.01 "5-ethyl-5-[(2R)-pentan-2-yl]-2-thioxodihydropyrimidine-4,6(1H,5H)-dione" EDP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "5-ethyl-5-[(2R)-pentan-2-yl]-2-sulfanylidene-1,3-diazinane-4,6-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site EDP "Create component" 2011-04-05 RCSB EDP "Modify descriptor" 2011-06-04 RCSB EDP "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id EDP _pdbx_chem_comp_synonyms.name Thiopental _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##