data_EE1 # _chem_comp.id EE1 _chem_comp.name "(3~{S})-3-[(4~{S})-3-aminocarbonyl-1-[(2~{R},3~{R},4~{S},5~{R})-5-[[[[(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-3,4-bis(oxidanyl)oxolan-2-yl]-4~{H}-pyridin-4-yl]-2-oxidanylidene-pentanedioic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H34 N7 O22 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "NADPH with ketoglutarate adduct" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-01-02 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 889.503 _chem_comp.one_letter_code ? _chem_comp.three_letter_code EE1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6C0E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal EE1 C10 C1 C 0 1 N N S 23.721 -7.845 51.717 8.650 -2.096 -0.263 C10 EE1 1 EE1 C15 C2 C 0 1 N N N 22.655 -7.217 50.828 9.744 -1.063 -0.179 C15 EE1 2 EE1 C17 C3 C 0 1 N N N 21.714 -6.164 51.389 11.085 -1.348 -0.766 C17 EE1 3 EE1 C20 C4 C 0 1 N N R 28.668 -8.467 51.840 5.417 2.229 1.061 C20 EE1 4 EE1 C22 C5 C 0 1 N N R 30.809 -8.337 51.003 3.514 3.371 0.398 C22 EE1 5 EE1 C02 C6 C 0 1 N N N 24.778 -7.173 54.759 8.151 -1.469 2.505 C02 EE1 6 EE1 C04 C7 C 0 1 N N N 25.426 -7.171 53.390 7.460 -0.796 1.470 C04 EE1 7 EE1 C05 C8 C 0 1 N N N 26.841 -7.708 53.274 6.951 0.427 1.704 C05 EE1 8 EE1 C07 C9 C 0 1 N N N 27.014 -6.794 51.008 6.437 0.720 -0.608 C07 EE1 9 EE1 C08 C10 C 0 1 N N N 25.589 -6.285 51.082 6.918 -0.462 -0.921 C08 EE1 10 EE1 C09 C11 C 0 1 N N S 24.684 -6.724 52.177 7.316 -1.458 0.129 C09 EE1 11 EE1 C11 C12 C 0 1 N N N 24.387 -8.980 50.937 8.964 -3.250 0.691 C11 EE1 12 EE1 C12 C13 C 0 1 N N N 24.640 -10.251 51.748 7.913 -4.321 0.547 C12 EE1 13 EE1 C23 C14 C 0 1 N N N 31.483 -7.291 50.134 2.642 3.482 -0.854 C23 EE1 14 EE1 C33 C15 C 0 1 N N N 31.298 -1.704 48.321 -3.887 -1.007 -1.722 C33 EE1 15 EE1 C34 C16 C 0 1 N N R 31.754 -0.377 48.217 -4.710 -1.444 -0.508 C34 EE1 16 EE1 C36 C17 C 0 1 N N R 31.452 1.512 49.522 -6.578 -0.706 0.644 C36 EE1 17 EE1 C37 C18 C 0 1 N N R 33.042 1.240 49.144 -7.140 -1.625 -0.470 C37 EE1 18 EE1 C43 C19 C 0 1 N N R 33.060 -0.044 49.013 -5.867 -2.356 -0.961 C43 EE1 19 EE1 C46 C20 C 0 1 Y N N 30.671 0.396 51.567 -7.326 1.671 0.241 C46 EE1 20 EE1 C48 C21 C 0 1 Y N N 31.075 1.910 53.069 -9.063 1.813 1.531 C48 EE1 21 EE1 C49 C22 C 0 1 Y N N 31.244 2.745 54.188 -10.203 2.155 2.278 C49 EE1 22 EE1 C52 C23 C 0 1 Y N N 32.165 4.369 52.828 -10.209 0.030 3.178 C52 EE1 23 EE1 C54 C24 C 0 1 Y N N 31.470 2.387 51.842 -8.543 0.516 1.672 C54 EE1 24 EE1 C55 C25 C 0 1 N N S 30.238 -9.299 50.293 4.663 4.401 0.338 C55 EE1 25 EE1 C57 C26 C 0 1 N N R 28.730 -9.149 50.466 5.948 3.541 0.428 C57 EE1 26 EE1 N01 N1 N 0 1 N N N 25.633 -7.578 55.803 9.374 -1.048 2.884 N01 EE1 27 EE1 N06 N2 N 0 1 N N N 27.306 -7.926 51.901 6.287 1.102 0.718 N06 EE1 28 EE1 N45 N3 N 0 1 Y N N 31.217 1.425 50.935 -7.451 0.454 0.844 N45 EE1 29 EE1 N47 N4 N 0 1 Y N N 30.599 0.669 52.865 -8.271 2.468 0.649 N47 EE1 30 EE1 N50 N5 N 0 1 N N N 30.850 2.295 55.498 -10.761 3.418 2.181 N50 EE1 31 EE1 N51 N6 N 0 1 Y N N 31.808 3.944 54.038 -10.734 1.238 3.079 N51 EE1 32 EE1 N53 N7 N 0 1 Y N N 32.017 3.617 51.741 -9.143 -0.335 2.498 N53 EE1 33 EE1 O03 O1 O 0 1 N N N 23.634 -6.891 54.969 7.641 -2.429 3.053 O03 EE1 34 EE1 O13 O2 O 0 1 N N N 23.705 -10.767 52.405 7.904 -5.370 1.385 O13 EE1 35 EE1 O14 O3 O 0 1 N N N 25.778 -10.795 51.733 7.079 -4.235 -0.323 O14 EE1 36 EE1 O16 O4 O 0 1 N N N 22.564 -7.530 49.685 9.535 -0.005 0.364 O16 EE1 37 EE1 O18 O5 O 0 1 N N N 20.750 -6.537 52.099 12.062 -0.426 -0.691 O18 EE1 38 EE1 O19 O6 O 0 1 N N N 21.886 -4.951 51.093 11.294 -2.411 -1.311 O19 EE1 39 EE1 O21 O7 O 0 1 N N N 29.640 -7.589 51.836 4.113 2.066 0.462 O21 EE1 40 EE1 O24 O8 O 0 1 N N N 30.520 -6.897 49.188 1.527 2.597 -0.738 O24 EE1 41 EE1 O26 O9 O 0 1 N N N 30.197 -5.736 46.935 1.042 2.124 -3.170 O26 EE1 42 EE1 O27 O10 O 0 1 N N N 32.278 -5.236 48.284 -0.404 3.842 -2.017 O27 EE1 43 EE1 O28 O11 O 0 1 N N N 29.921 -4.330 48.941 -0.626 1.279 -1.474 O28 EE1 44 EE1 O30 O12 O 0 1 N N N 30.760 -4.022 51.391 -0.891 -0.814 -3.043 O30 EE1 45 EE1 O31 O13 O 0 1 N N N 28.991 -2.546 50.366 -2.365 1.218 -3.303 O31 EE1 46 EE1 O32 O14 O 0 1 N N N 31.451 -2.274 49.617 -2.761 -0.244 -1.285 O32 EE1 47 EE1 O35 O15 O 0 1 N N N 30.782 0.620 48.872 -5.295 -0.294 0.125 O35 EE1 48 EE1 O38 O16 O 0 1 N N N 33.153 2.014 47.916 -8.087 -2.553 0.064 O38 EE1 49 EE1 O40 O17 O 0 1 N N N 35.640 1.591 47.614 -9.676 -3.072 -1.965 O40 EE1 50 EE1 O41 O18 O 0 1 N N N 34.973 3.856 48.264 -10.425 -3.682 0.481 O41 EE1 51 EE1 O42 O19 O 0 1 N N N 34.412 3.004 45.978 -10.241 -1.282 -0.277 O42 EE1 52 EE1 O44 O20 O 0 1 N N N 34.243 -0.567 48.285 -5.759 -3.641 -0.346 O44 EE1 53 EE1 O56 O21 O 0 1 N N N 30.550 -10.632 50.902 4.586 5.300 1.445 O56 EE1 54 EE1 O58 O22 O 0 1 N N N 28.038 -10.341 50.497 6.918 4.160 1.275 O58 EE1 55 EE1 P25 P1 P 0 1 N N N 30.797 -5.544 48.304 0.399 2.453 -1.878 P25 EE1 56 EE1 P29 P2 P 0 1 N N N 30.271 -3.304 50.165 -1.676 0.378 -2.298 P29 EE1 57 EE1 P39 P3 P 0 1 N N N 34.594 2.660 47.444 -9.621 -2.618 -0.421 P39 EE1 58 EE1 H1 H1 H 0 1 N N N 23.233 -8.270 52.607 8.586 -2.475 -1.283 H1 EE1 59 EE1 H2 H2 H 0 1 N N N 28.800 -9.230 52.621 5.332 2.332 2.143 H2 EE1 60 EE1 H3 H3 H 0 1 N N N 31.539 -8.733 51.724 2.908 3.545 1.288 H3 EE1 61 EE1 H5 H5 H 0 1 N N N 27.458 -7.914 54.136 7.066 0.878 2.679 H5 EE1 62 EE1 H7 H7 H 0 1 N N N 27.755 -6.361 50.353 6.159 1.406 -1.394 H7 EE1 63 EE1 H9 H9 H 0 1 N N N 25.227 -5.597 50.332 7.025 -0.726 -1.962 H9 EE1 64 EE1 H11 H11 H 0 1 N N N 24.062 -5.863 52.464 6.553 -2.234 0.193 H11 EE1 65 EE1 H12 H12 H 0 1 N N N 23.738 -9.239 50.088 9.942 -3.666 0.449 H12 EE1 66 EE1 H13 H13 H 0 1 N N N 25.354 -8.616 50.561 8.969 -2.882 1.717 H13 EE1 67 EE1 H14 H14 H 0 1 N N N 32.361 -7.721 49.630 2.283 4.506 -0.957 H14 EE1 68 EE1 H15 H15 H 0 1 N N N 31.795 -6.430 50.744 3.230 3.213 -1.731 H15 EE1 69 EE1 H16 H16 H 0 1 N N N 30.230 -1.723 48.060 -3.542 -1.887 -2.263 H16 EE1 70 EE1 H17 H17 H 0 1 N N N 31.862 -2.320 47.605 -4.506 -0.396 -2.380 H17 EE1 71 EE1 H18 H18 H 0 1 N N N 31.901 -0.095 47.164 -4.073 -1.973 0.200 H18 EE1 72 EE1 H19 H19 H 0 1 N N N 31.215 2.529 49.175 -6.458 -1.259 1.575 H19 EE1 73 EE1 H20 H20 H 0 1 N N N 33.681 1.638 49.946 -7.585 -1.037 -1.273 H20 EE1 74 EE1 H21 H21 H 0 1 N N N 32.995 -0.551 49.987 -5.876 -2.451 -2.046 H21 EE1 75 EE1 H22 H22 H 0 1 N N N 30.338 -0.519 51.101 -6.554 1.936 -0.466 H22 EE1 76 EE1 H23 H23 H 0 1 N N N 32.589 5.357 52.726 -10.672 -0.685 3.842 H23 EE1 77 EE1 H24 H24 H 0 1 N N N 30.507 -9.282 49.227 4.638 4.951 -0.603 H24 EE1 78 EE1 H25 H25 H 0 1 N N N 28.336 -8.467 49.699 6.361 3.355 -0.563 H25 EE1 79 EE1 H26 H26 H 0 1 N N N 25.287 -7.634 56.740 9.818 -1.464 3.639 H26 EE1 80 EE1 H27 H27 H 0 1 N N N 26.586 -7.810 55.607 9.810 -0.328 2.401 H27 EE1 81 EE1 H29 H29 H 0 1 N N N 31.070 2.999 56.173 -10.364 4.079 1.592 H29 EE1 82 EE1 H30 H30 H 0 1 N N N 29.865 2.120 55.508 -11.548 3.642 2.701 H30 EE1 83 EE1 H31 H31 H 0 1 N N N 24.015 -11.558 52.831 7.211 -6.031 1.253 H31 EE1 84 EE1 H32 H32 H 0 1 N N N 20.226 -5.783 52.344 12.914 -0.656 -1.086 H32 EE1 85 EE1 H33 H33 H 0 1 N N N 32.586 -5.216 47.385 -0.851 4.121 -1.206 H33 EE1 86 EE1 H34 H34 H 0 1 N N N 30.157 -3.870 52.109 -0.415 -1.406 -2.444 H34 EE1 87 EE1 H35 H35 H 0 1 N N N 35.981 1.342 46.763 -9.287 -3.941 -2.133 H35 EE1 88 EE1 H36 H36 H 0 1 N N N 35.030 4.620 47.703 -11.358 -3.774 0.243 H36 EE1 89 EE1 H37 H37 H 0 1 N N N 35.032 -0.362 48.773 -4.950 -4.120 -0.573 H37 EE1 90 EE1 H38 H38 H 0 1 N N N 31.482 -10.802 50.833 5.316 5.932 1.490 H38 EE1 91 EE1 H39 H39 H 0 1 N N N 27.249 -10.236 51.015 7.214 5.027 0.966 H39 EE1 92 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EE1 O42 P39 DOUB N N 1 EE1 O26 P25 DOUB N N 2 EE1 P39 O40 SING N N 3 EE1 P39 O38 SING N N 4 EE1 P39 O41 SING N N 5 EE1 O38 C37 SING N N 6 EE1 C34 C33 SING N N 7 EE1 C34 O35 SING N N 8 EE1 C34 C43 SING N N 9 EE1 O27 P25 SING N N 10 EE1 O44 C43 SING N N 11 EE1 P25 O28 SING N N 12 EE1 P25 O24 SING N N 13 EE1 C33 O32 SING N N 14 EE1 O35 C36 SING N N 15 EE1 O28 P29 SING N N 16 EE1 C43 C37 SING N N 17 EE1 C37 C36 SING N N 18 EE1 O24 C23 SING N N 19 EE1 C36 N45 SING N N 20 EE1 O32 P29 SING N N 21 EE1 O16 C15 DOUB N N 22 EE1 C23 C22 SING N N 23 EE1 P29 O31 DOUB N N 24 EE1 P29 O30 SING N N 25 EE1 C55 C57 SING N N 26 EE1 C55 O56 SING N N 27 EE1 C55 C22 SING N N 28 EE1 C57 O58 SING N N 29 EE1 C57 C20 SING N N 30 EE1 C15 C17 SING N N 31 EE1 C15 C10 SING N N 32 EE1 N45 C46 SING Y N 33 EE1 N45 C54 SING Y N 34 EE1 C11 C10 SING N N 35 EE1 C11 C12 SING N N 36 EE1 C22 O21 SING N N 37 EE1 C07 C08 DOUB N N 38 EE1 C07 N06 SING N N 39 EE1 C08 C09 SING N N 40 EE1 O19 C17 DOUB N N 41 EE1 C17 O18 SING N N 42 EE1 C46 N47 DOUB Y N 43 EE1 C10 C09 SING N N 44 EE1 O14 C12 DOUB N N 45 EE1 N53 C54 DOUB Y N 46 EE1 N53 C52 SING Y N 47 EE1 C12 O13 SING N N 48 EE1 O21 C20 SING N N 49 EE1 C20 N06 SING N N 50 EE1 C54 C48 SING Y N 51 EE1 N06 C05 SING N N 52 EE1 C09 C04 SING N N 53 EE1 C52 N51 DOUB Y N 54 EE1 N47 C48 SING Y N 55 EE1 C48 C49 DOUB Y N 56 EE1 C05 C04 DOUB N N 57 EE1 C04 C02 SING N N 58 EE1 N51 C49 SING Y N 59 EE1 C49 N50 SING N N 60 EE1 C02 O03 DOUB N N 61 EE1 C02 N01 SING N N 62 EE1 C10 H1 SING N N 63 EE1 C20 H2 SING N N 64 EE1 C22 H3 SING N N 65 EE1 C05 H5 SING N N 66 EE1 C07 H7 SING N N 67 EE1 C08 H9 SING N N 68 EE1 C09 H11 SING N N 69 EE1 C11 H12 SING N N 70 EE1 C11 H13 SING N N 71 EE1 C23 H14 SING N N 72 EE1 C23 H15 SING N N 73 EE1 C33 H16 SING N N 74 EE1 C33 H17 SING N N 75 EE1 C34 H18 SING N N 76 EE1 C36 H19 SING N N 77 EE1 C37 H20 SING N N 78 EE1 C43 H21 SING N N 79 EE1 C46 H22 SING N N 80 EE1 C52 H23 SING N N 81 EE1 C55 H24 SING N N 82 EE1 C57 H25 SING N N 83 EE1 N01 H26 SING N N 84 EE1 N01 H27 SING N N 85 EE1 N50 H29 SING N N 86 EE1 N50 H30 SING N N 87 EE1 O13 H31 SING N N 88 EE1 O18 H32 SING N N 89 EE1 O27 H33 SING N N 90 EE1 O30 H34 SING N N 91 EE1 O40 H35 SING N N 92 EE1 O41 H36 SING N N 93 EE1 O44 H37 SING N N 94 EE1 O56 H38 SING N N 95 EE1 O58 H39 SING N N 96 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor EE1 InChI InChI 1.03 "InChI=1S/C26H34N7O22P3/c27-21-15-23(30-7-29-21)33(8-31-15)25-20(54-56(43,44)45)18(38)13(53-25)6-51-58(48,49)55-57(46,47)50-5-12-17(37)19(39)24(52-12)32-2-1-9(11(4-32)22(28)40)10(3-14(34)35)16(36)26(41)42/h1-2,4,7-10,12-13,17-20,24-25,37-39H,3,5-6H2,(H2,28,40)(H,34,35)(H,41,42)(H,46,47)(H,48,49)(H2,27,29,30)(H2,43,44,45)/t9-,10-,12+,13+,17+,18+,19+,20+,24+,25+/m0/s1" EE1 InChIKey InChI 1.03 WSGZIHXYYXDDDT-PJNAXEGASA-N EE1 SMILES_CANONICAL CACTVS 3.385 "NC(=O)C1=CN(C=C[C@H]1[C@H](CC(O)=O)C(=O)C(O)=O)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O" EE1 SMILES CACTVS 3.385 "NC(=O)C1=CN(C=C[CH]1[CH](CC(O)=O)C(=O)C(O)=O)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O" EE1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)N5C=C[C@H](C(=C5)C(=O)N)[C@H](CC(=O)O)C(=O)C(=O)O)O)O)O)OP(=O)(O)O)N" EE1 SMILES "OpenEye OEToolkits" 2.0.6 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)N5C=CC(C(=C5)C(=O)N)C(CC(=O)O)C(=O)C(=O)O)O)O)O)OP(=O)(O)O)N" # _pdbx_chem_comp_identifier.comp_id EE1 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "(3~{S})-3-[(4~{S})-3-aminocarbonyl-1-[(2~{R},3~{R},4~{S},5~{R})-5-[[[[(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-3,4-bis(oxidanyl)oxolan-2-yl]-4~{H}-pyridin-4-yl]-2-oxidanylidene-pentanedioic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site EE1 "Create component" 2018-01-02 RCSB EE1 "Modify value order" 2018-01-25 RCSB EE1 "Initial release" 2018-02-07 RCSB EE1 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id EE1 _pdbx_chem_comp_synonyms.name "NADPH with ketoglutarate adduct" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##