data_EFJ # _chem_comp.id EFJ _chem_comp.name "2-(1~{H}-benzimidazol-2-ylsulfanylmethyl)-3-bromanyl-5,7-dimethyl-imidazo[1,2-a]pyrimidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H14 Br N5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-01-05 _chem_comp.pdbx_modified_date 2023-04-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 388.285 _chem_comp.one_letter_code ? _chem_comp.three_letter_code EFJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7QPF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal EFJ C1 C1 C 0 1 N N N -4.442 -27.872 30.726 6.510 2.620 -0.064 C1 EFJ 1 EFJ C2 C2 C 0 1 Y N N -4.476 -27.876 32.228 5.296 1.728 -0.085 C2 EFJ 2 EFJ C3 C3 C 0 1 Y N N -4.735 -29.072 32.942 5.443 0.346 0.106 C3 EFJ 3 EFJ C4 C4 C 0 1 Y N N -4.773 -29.068 34.296 4.344 -0.448 0.085 C4 EFJ 4 EFJ C5 C5 C 0 1 N N N -5.027 -30.289 35.094 4.473 -1.935 0.289 C5 EFJ 5 EFJ N1 N1 N 0 1 Y N N -4.545 -27.849 34.945 3.120 0.119 -0.123 N1 EFJ 6 EFJ C6 C6 C 0 1 Y N N -4.480 -27.464 36.272 1.857 -0.401 -0.197 C6 EFJ 7 EFJ BR1 BR1 BR 0 0 N N N -4.706 -28.592 37.738 1.378 -2.222 -0.018 BR1 EFJ 8 EFJ C7 C7 C 0 1 Y N N -4.200 -26.139 36.295 1.015 0.632 -0.422 C7 EFJ 9 EFJ C8 C8 C 0 1 N N N -4.131 -25.225 37.474 -0.481 0.530 -0.575 C8 EFJ 10 EFJ S1 S1 S 0 1 N N N -2.584 -25.238 38.414 -1.266 0.702 1.047 S1 EFJ 11 EFJ C9 C9 C 0 1 Y N N -3.026 -24.102 39.676 -2.959 0.548 0.585 C9 EFJ 12 EFJ N2 N2 N 0 1 Y N N -3.811 -23.021 39.534 -4.018 0.611 1.447 N2 EFJ 13 EFJ C10 C10 C 0 1 Y N N -3.884 -22.468 40.815 -5.170 0.446 0.695 C10 EFJ 14 EFJ C11 C11 C 0 1 Y N N -4.554 -21.329 41.263 -6.521 0.417 1.002 C11 EFJ 15 EFJ C12 C12 C 0 1 Y N N -4.444 -21.004 42.599 -7.450 0.229 -0.002 C12 EFJ 16 EFJ C13 C13 C 0 1 Y N N -3.673 -21.778 43.477 -7.040 0.069 -1.316 C13 EFJ 17 EFJ C14 C14 C 0 1 Y N N -2.986 -22.897 43.049 -5.701 0.096 -1.640 C14 EFJ 18 EFJ C15 C15 C 0 1 Y N N -3.127 -23.241 41.706 -4.749 0.285 -0.635 C15 EFJ 19 EFJ N3 N3 N 0 1 Y N N -2.602 -24.275 40.952 -3.392 0.363 -0.638 N3 EFJ 20 EFJ N4 N4 N 0 1 Y N N -4.111 -25.662 35.001 1.730 1.759 -0.485 N4 EFJ 21 EFJ C16 C16 C 0 1 Y N N -4.290 -26.699 34.185 3.012 1.474 -0.306 C16 EFJ 22 EFJ N5 N5 N 0 1 Y N N -4.249 -26.717 32.838 4.107 2.248 -0.278 N5 EFJ 23 EFJ H1 H1 H 0 1 N N N -4.223 -26.856 30.366 6.203 3.654 -0.224 H1 EFJ 24 EFJ H2 H2 H 0 1 N N N -3.660 -28.561 30.375 7.007 2.534 0.902 H2 EFJ 25 EFJ H3 H3 H 0 1 N N N -5.418 -28.196 30.336 7.197 2.318 -0.854 H3 EFJ 26 EFJ H4 H4 H 0 1 N N N -4.903 -29.993 32.403 6.421 -0.081 0.268 H4 EFJ 27 EFJ H5 H5 H 0 1 N N N -4.072 -30.788 35.315 5.522 -2.192 0.438 H5 EFJ 28 EFJ H6 H6 H 0 1 N N N -5.524 -30.014 36.036 3.897 -2.233 1.165 H6 EFJ 29 EFJ H7 H7 H 0 1 N N N -5.674 -30.972 34.524 4.092 -2.457 -0.590 H7 EFJ 30 EFJ H8 H8 H 0 1 N N N -4.294 -24.199 37.112 -0.833 1.321 -1.235 H8 EFJ 31 EFJ H9 H9 H 0 1 N N N -4.943 -25.504 38.162 -0.737 -0.440 -1.001 H9 EFJ 32 EFJ H10 H10 H 0 1 N N N -4.246 -22.687 38.698 -3.971 0.746 2.406 H10 EFJ 33 EFJ H11 H11 H 0 1 N N N -5.139 -20.723 40.587 -6.847 0.540 2.025 H11 EFJ 34 EFJ H12 H12 H 0 1 N N N -4.963 -20.135 42.976 -8.502 0.206 0.239 H12 EFJ 35 EFJ H13 H13 H 0 1 N N N -3.615 -21.492 44.517 -7.776 -0.077 -2.093 H13 EFJ 36 EFJ H14 H14 H 0 1 N N N -2.370 -23.476 43.721 -5.389 -0.029 -2.666 H14 EFJ 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EFJ C1 C2 SING N N 1 EFJ C2 N5 DOUB Y N 2 EFJ C2 C3 SING Y N 3 EFJ N5 C16 SING Y N 4 EFJ C3 C4 DOUB Y N 5 EFJ C16 N1 SING Y N 6 EFJ C16 N4 DOUB Y N 7 EFJ C4 N1 SING Y N 8 EFJ C4 C5 SING N N 9 EFJ N1 C6 SING Y N 10 EFJ N4 C7 SING Y N 11 EFJ C6 C7 DOUB Y N 12 EFJ C6 BR1 SING N N 13 EFJ C7 C8 SING N N 14 EFJ C8 S1 SING N N 15 EFJ S1 C9 SING N N 16 EFJ N2 C9 SING Y N 17 EFJ N2 C10 SING Y N 18 EFJ C9 N3 DOUB Y N 19 EFJ C10 C11 DOUB Y N 20 EFJ C10 C15 SING Y N 21 EFJ N3 C15 SING Y N 22 EFJ C11 C12 SING Y N 23 EFJ C15 C14 DOUB Y N 24 EFJ C12 C13 DOUB Y N 25 EFJ C14 C13 SING Y N 26 EFJ C1 H1 SING N N 27 EFJ C1 H2 SING N N 28 EFJ C1 H3 SING N N 29 EFJ C3 H4 SING N N 30 EFJ C5 H5 SING N N 31 EFJ C5 H6 SING N N 32 EFJ C5 H7 SING N N 33 EFJ C8 H8 SING N N 34 EFJ C8 H9 SING N N 35 EFJ N2 H10 SING N N 36 EFJ C11 H11 SING N N 37 EFJ C12 H12 SING N N 38 EFJ C13 H13 SING N N 39 EFJ C14 H14 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor EFJ InChI InChI 1.06 "InChI=1S/C16H14BrN5S/c1-9-7-10(2)22-14(17)13(19-15(22)18-9)8-23-16-20-11-5-3-4-6-12(11)21-16/h3-7H,8H2,1-2H3,(H,20,21)" EFJ InChIKey InChI 1.06 ALBNESBXBIORDS-UHFFFAOYSA-N EFJ SMILES_CANONICAL CACTVS 3.385 "Cc1cc(C)n2c(Br)c(CSc3[nH]c4ccccc4n3)nc2n1" EFJ SMILES CACTVS 3.385 "Cc1cc(C)n2c(Br)c(CSc3[nH]c4ccccc4n3)nc2n1" EFJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(n2c(c(nc2n1)CSc3[nH]c4ccccc4n3)Br)C" EFJ SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(n2c(c(nc2n1)CSc3[nH]c4ccccc4n3)Br)C" # _pdbx_chem_comp_identifier.comp_id EFJ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-(1~{H}-benzimidazol-2-ylsulfanylmethyl)-3-bromanyl-5,7-dimethyl-imidazo[1,2-a]pyrimidine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site EFJ "Create component" 2022-01-05 PDBE EFJ "Modify descriptor" 2022-08-22 RCSB EFJ "Initial release" 2023-04-19 RCSB #