data_EHZ
#
_chem_comp.id EHZ
_chem_comp.name "~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H49 N2 O9 P S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-03-23
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 584.703
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code EHZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6G2J
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
EHZ O1 O1 O 0 1 N N N N N N 257.882 230.495 267.045 5.623 -1.694 0.911 O1 EHZ 1
EHZ C1 C1 C 0 1 N N N N N N 257.475 238.190 267.454 12.824 0.983 0.605 C1 EHZ 2
EHZ C2 C2 C 0 1 N N N N N N 256.945 236.861 267.932 11.816 0.309 -0.327 C2 EHZ 3
EHZ C3 C3 C 0 1 N N N N N N 257.887 235.698 267.732 10.425 0.353 0.309 C3 EHZ 4
EHZ C4 C4 C 0 1 N N N N N N 257.385 234.402 268.320 9.416 -0.322 -0.623 C4 EHZ 5
EHZ O2 O2 O 0 1 N N N N N N 259.989 228.908 265.739 3.065 -0.803 0.402 O2 EHZ 6
EHZ C5 C5 C 0 1 N N N N N N 258.292 233.211 268.124 8.025 -0.277 0.014 C5 EHZ 7
EHZ C6 C6 C 0 1 N N N N N N 258.499 232.803 266.689 7.017 -0.952 -0.918 C6 EHZ 8
EHZ C7 C7 C 0 1 N N S N N N 258.868 231.344 266.464 5.626 -0.908 -0.282 C7 EHZ 9
EHZ C8 C8 C 0 1 N N N N N N 260.236 230.930 266.993 4.597 -1.469 -1.265 C8 EHZ 10
EHZ C10 C9 C 0 1 N N N N N N 262.599 227.662 265.971 0.531 -1.416 -0.416 C10 EHZ 11
EHZ C11 C10 C 0 1 N N N N N N 262.560 227.883 264.476 -0.821 -1.819 -1.009 C11 EHZ 12
EHZ C12 C11 C 0 1 N N N N N N 264.894 227.426 263.910 -3.175 -1.724 -0.386 C12 EHZ 13
EHZ C13 C12 C 0 1 N N N N N N 265.907 226.404 263.440 -4.275 -1.358 0.577 C13 EHZ 14
EHZ C14 C13 C 0 1 N N N N N N 267.294 227.003 263.502 -5.627 -1.761 -0.015 C14 EHZ 15
EHZ C15 C14 C 0 1 N N N N N N 269.226 225.972 262.403 -7.980 -1.667 0.608 C15 EHZ 16
EHZ C16 C15 C 0 1 N N R N N N 268.813 226.634 261.100 -9.070 -1.404 1.615 C16 EHZ 17
EHZ C17 C16 C 0 1 N N N N N N 269.640 227.857 260.682 -9.319 0.102 1.716 C17 EHZ 18
EHZ C18 C17 C 0 1 N N N N N N 269.539 228.952 261.747 -10.518 0.361 2.630 C18 EHZ 19
EHZ C19 C18 C 0 1 N N N N N N 271.109 227.464 260.508 -8.079 0.786 2.296 C19 EHZ 20
EHZ C20 C19 C 0 1 N N N N N N 269.088 228.372 259.356 -9.608 0.666 0.324 C20 EHZ 21
EHZ C21 C20 C 0 1 N N N N N N 256.539 239.353 267.668 14.215 0.939 -0.031 C21 EHZ 22
EHZ C22 C21 C 0 1 N N N N N N 255.234 239.246 266.916 15.224 1.614 0.901 C22 EHZ 23
EHZ C9 C22 C 0 1 N N N N N N 260.670 229.592 266.464 3.214 -1.313 -0.689 C9 EHZ 24
EHZ N1 N1 N 0 1 N N N N N N 263.597 227.123 263.795 -1.890 -1.462 -0.073 N1 EHZ 25
EHZ N2 N2 N 0 1 N N N N N N 268.352 226.006 263.400 -6.696 -1.405 0.921 N2 EHZ 26
EHZ O3 O3 O 0 1 N N N N N N 265.264 228.481 264.418 -3.446 -2.255 -1.442 O3 EHZ 27
EHZ O4 O4 O 0 1 N N N N N N 270.303 225.386 262.478 -8.259 -2.114 -0.484 O4 EHZ 28
EHZ O5 O5 O 0 1 N N N N N N 268.864 225.681 260.052 -10.270 -2.058 1.200 O5 EHZ 29
EHZ O6 O6 O 0 1 N N N N N N 269.863 229.517 258.910 -9.840 2.073 0.418 O6 EHZ 30
EHZ O7 O7 O 0 1 N N N N N N 270.347 228.981 256.516 -8.907 3.020 -1.850 O7 EHZ 31
EHZ O9 O8 O 0 1 N N N N N N 268.159 230.056 257.170 -11.347 2.439 -1.574 O9 EHZ 32
EHZ P1 P1 P 0 1 N N N N N N 269.659 230.015 257.387 -10.175 2.993 -0.860 P1 EHZ 33
EHZ S1 S1 S 0 1 N N N N N N 262.288 229.132 266.983 1.852 -1.856 -1.573 S1 EHZ 34
EHZ H1 H1 H 0 1 N N N N N N 258.113 229.587 266.888 5.842 -2.625 0.769 H1 EHZ 35
EHZ H2 H2 H 0 1 N N N N N N 257.681 238.110 266.377 12.532 2.021 0.767 H2 EHZ 36
EHZ H3 H3 H 0 1 N N N N N N 258.411 238.400 267.992 12.845 0.458 1.560 H3 EHZ 37
EHZ H4 H4 H 0 1 N N N N N N 256.728 236.945 269.007 11.795 0.834 -1.282 H4 EHZ 38
EHZ H5 H5 H 0 1 N N N N N N 256.015 236.646 267.386 12.108 -0.729 -0.489 H5 EHZ 39
EHZ H6 H6 H 0 1 N N N N N N 258.037 235.554 266.652 10.445 -0.172 1.264 H6 EHZ 40
EHZ H7 H7 H 0 1 N N N N N N 258.849 235.945 268.206 10.132 1.390 0.472 H7 EHZ 41
EHZ H8 H8 H 0 1 N N N N N N 257.247 234.550 269.401 9.396 0.204 -1.577 H8 EHZ 42
EHZ H9 H9 H 0 1 N N N N N N 256.415 234.171 267.855 9.709 -1.359 -0.785 H9 EHZ 43
EHZ H10 H10 H 0 1 N N N N N N 257.856 232.357 268.663 8.046 -0.803 0.968 H10 EHZ 44
EHZ H11 H11 H 0 1 N N N N N N 259.274 233.454 268.555 7.733 0.760 0.176 H11 EHZ 45
EHZ H12 H12 H 0 1 N N N N N N 259.307 233.424 266.274 6.996 -0.426 -1.873 H12 EHZ 46
EHZ H13 H13 H 0 1 N N N N N N 257.566 233.004 266.143 7.309 -1.989 -1.081 H13 EHZ 47
EHZ H14 H14 H 0 1 N N N N N N 258.875 231.174 265.377 5.370 0.123 -0.038 H14 EHZ 48
EHZ H15 H15 H 0 1 N N N N N N 260.976 231.686 266.692 4.661 -0.926 -2.208 H15 EHZ 49
EHZ H16 H16 H 0 1 N N N N N N 260.190 230.879 268.091 4.801 -2.526 -1.441 H16 EHZ 50
EHZ H17 H17 H 0 1 N N N N N N 261.837 226.910 266.223 0.545 -0.340 -0.241 H17 EHZ 51
EHZ H18 H18 H 0 1 N N N N N N 263.596 227.276 266.231 0.684 -1.940 0.527 H18 EHZ 52
EHZ H19 H19 H 0 1 N N N N N N 262.708 228.953 264.269 -0.975 -1.294 -1.952 H19 EHZ 53
EHZ H20 H20 H 0 1 N N N N N N 261.578 227.568 264.094 -0.835 -2.894 -1.185 H20 EHZ 54
EHZ H21 H21 H 0 1 N N N N N N 265.680 226.112 262.404 -4.121 -1.883 1.521 H21 EHZ 55
EHZ H22 H22 H 0 1 N N N N N N 265.861 225.517 264.089 -4.261 -0.283 0.753 H22 EHZ 56
EHZ H23 H23 H 0 1 N N N N N N 267.404 227.533 264.459 -5.780 -1.236 -0.959 H23 EHZ 57
EHZ H24 H24 H 0 1 N N N N N N 267.405 227.717 262.673 -5.641 -2.836 -0.191 H24 EHZ 58
EHZ H25 H25 H 0 1 N N N N N N 267.773 226.971 261.219 -8.765 -1.788 2.589 H25 EHZ 59
EHZ H26 H26 H 0 1 N N N N N N 269.938 228.575 262.700 -10.352 -0.121 3.593 H26 EHZ 60
EHZ H27 H27 H 0 1 N N N N N N 270.121 229.829 261.427 -10.638 1.434 2.777 H27 EHZ 61
EHZ H28 H28 H 0 1 N N N N N N 268.485 229.239 261.879 -11.419 -0.046 2.171 H28 EHZ 62
EHZ H29 H29 H 0 1 N N N N N N 271.506 227.093 261.465 -7.250 0.691 1.595 H29 EHZ 63
EHZ H30 H30 H 0 1 N N N N N N 271.189 226.674 259.747 -8.292 1.842 2.465 H30 EHZ 64
EHZ H31 H31 H 0 1 N N N N N N 271.688 228.343 260.187 -7.812 0.313 3.241 H31 EHZ 65
EHZ H32 H32 H 0 1 N N N N N N 268.038 228.672 259.490 -8.753 0.482 -0.327 H32 EHZ 66
EHZ H33 H33 H 0 1 N N N N N N 269.148 227.574 258.601 -10.491 0.179 -0.090 H33 EHZ 67
EHZ H34 H34 H 0 1 N N N N N N 257.050 240.271 267.342 14.508 -0.098 -0.194 H34 EHZ 68
EHZ H35 H35 H 0 1 N N N N N N 256.313 239.420 268.742 14.195 1.465 -0.986 H35 EHZ 69
EHZ H36 H36 H 0 1 N N N N N N 254.534 239.388 267.752 14.931 2.651 1.063 H36 EHZ 70
EHZ H37 H37 H 0 1 N N N N N N 255.292 240.172 266.325 15.244 1.088 1.855 H37 EHZ 71
EHZ H39 H39 H 0 1 N N N N N N 263.331 226.348 263.222 -1.674 -1.038 0.772 H39 EHZ 72
EHZ H40 H40 H 0 1 N N N N N N 268.422 225.313 264.117 -6.479 -0.980 1.766 H40 EHZ 73
EHZ H41 H41 H 0 1 N N N N N N 269.438 224.966 260.301 -10.601 -1.765 0.340 H41 EHZ 74
EHZ H42 H42 H 0 1 N N N N N N 269.700 228.536 255.981 -8.101 3.372 -1.448 H42 EHZ 75
EHZ OP3 OP3 O 0 1 N N N N N N 270.241 231.440 257.084 -10.505 4.491 -0.370 OP3 EHZ 76
EHZ C23 C23 C 0 1 N N N N N N ? ? ? 16.615 1.570 0.264 C23 EHZ 77
EHZ C24 C24 C 0 1 N N N N N N ? ? ? 17.623 2.244 1.196 C24 EHZ 78
EHZ C25 C25 C 0 1 N N N N N N ? ? ? 19.014 2.200 0.560 C25 EHZ 79
EHZ H44 H44 H 0 1 N N N N N N 269.535 232.023 256.830 -10.717 5.102 -1.089 H44 EHZ 80
EHZ H45 H45 H 0 1 N N N N N N ? ? ? 16.907 0.532 0.102 H45 EHZ 81
EHZ H46 H46 H 0 1 N N N N N N ? ? ? 16.594 2.095 -0.690 H46 EHZ 82
EHZ H47 H47 H 0 1 N N N N N N ? ? ? 17.331 3.282 1.359 H47 EHZ 83
EHZ H48 H48 H 0 1 N N N N N N ? ? ? 17.644 1.719 2.151 H48 EHZ 84
EHZ H49 H49 H 0 1 N N N N N N ? ? ? 19.307 1.163 0.398 H49 EHZ 85
EHZ H50 H50 H 0 1 N N N N N N ? ? ? 18.994 2.726 -0.395 H50 EHZ 86
EHZ H51 H51 H 0 1 N N N N N N ? ? ? 19.733 2.681 1.224 H51 EHZ 87
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
EHZ O7 P1 SING N N 1
EHZ O9 P1 DOUB N N 2
EHZ P1 O6 SING N N 3
EHZ O6 C20 SING N N 4
EHZ C20 C17 SING N N 5
EHZ O5 C16 SING N N 6
EHZ C19 C17 SING N N 7
EHZ C17 C16 SING N N 8
EHZ C17 C18 SING N N 9
EHZ C16 C15 SING N N 10
EHZ C15 O4 DOUB N N 11
EHZ C15 N2 SING N N 12
EHZ N2 C14 SING N N 13
EHZ C13 C14 SING N N 14
EHZ C13 C12 SING N N 15
EHZ N1 C12 SING N N 16
EHZ N1 C11 SING N N 17
EHZ C12 O3 DOUB N N 18
EHZ C11 C10 SING N N 19
EHZ O2 C9 DOUB N N 20
EHZ C10 S1 SING N N 21
EHZ C7 C6 SING N N 22
EHZ C7 C8 SING N N 23
EHZ C7 O1 SING N N 24
EHZ C9 S1 SING N N 25
EHZ C9 C8 SING N N 26
EHZ C6 C5 SING N N 27
EHZ C22 C21 SING N N 28
EHZ C1 C21 SING N N 29
EHZ C1 C2 SING N N 30
EHZ C3 C2 SING N N 31
EHZ C3 C4 SING N N 32
EHZ C5 C4 SING N N 33
EHZ O1 H1 SING N N 34
EHZ C1 H2 SING N N 35
EHZ C1 H3 SING N N 36
EHZ C2 H4 SING N N 37
EHZ C2 H5 SING N N 38
EHZ C3 H6 SING N N 39
EHZ C3 H7 SING N N 40
EHZ C4 H8 SING N N 41
EHZ C4 H9 SING N N 42
EHZ C5 H10 SING N N 43
EHZ C5 H11 SING N N 44
EHZ C6 H12 SING N N 45
EHZ C6 H13 SING N N 46
EHZ C7 H14 SING N N 47
EHZ C8 H15 SING N N 48
EHZ C8 H16 SING N N 49
EHZ C10 H17 SING N N 50
EHZ C10 H18 SING N N 51
EHZ C11 H19 SING N N 52
EHZ C11 H20 SING N N 53
EHZ C13 H21 SING N N 54
EHZ C13 H22 SING N N 55
EHZ C14 H23 SING N N 56
EHZ C14 H24 SING N N 57
EHZ C16 H25 SING N N 58
EHZ C18 H26 SING N N 59
EHZ C18 H27 SING N N 60
EHZ C18 H28 SING N N 61
EHZ C19 H29 SING N N 62
EHZ C19 H30 SING N N 63
EHZ C19 H31 SING N N 64
EHZ C20 H32 SING N N 65
EHZ C20 H33 SING N N 66
EHZ C21 H34 SING N N 67
EHZ C21 H35 SING N N 68
EHZ C22 H36 SING N N 69
EHZ C22 H37 SING N N 70
EHZ N1 H39 SING N N 71
EHZ N2 H40 SING N N 72
EHZ O5 H41 SING N N 73
EHZ O7 H42 SING N N 74
EHZ P1 OP3 SING N N 75
EHZ C22 C23 SING N N 76
EHZ C23 C24 SING N N 77
EHZ C24 C25 SING N N 78
EHZ OP3 H44 SING N N 79
EHZ C23 H45 SING N N 80
EHZ C23 H46 SING N N 81
EHZ C24 H47 SING N N 82
EHZ C24 H48 SING N N 83
EHZ C25 H49 SING N N 84
EHZ C25 H50 SING N N 85
EHZ C25 H51 SING N N 86
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
EHZ InChI InChI 1.03 "InChI=1S/C25H49N2O9PS/c1-4-5-6-7-8-9-10-11-12-13-20(28)18-22(30)38-17-16-26-21(29)14-15-27-24(32)23(31)25(2,3)19-36-37(33,34)35/h20,23,28,31H,4-19H2,1-3H3,(H,26,29)(H,27,32)(H2,33,34,35)/t20-,23-/m0/s1"
EHZ InChIKey InChI 1.03 JYSKQPQRUCZFIQ-REWPJTCUSA-N
EHZ SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCC[C@H](O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(O)=O"
EHZ SMILES CACTVS 3.385 "CCCCCCCCCCC[CH](O)CC(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(O)=O"
EHZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCCCCCCCCCC[C@@H](CC(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)O)O)O"
EHZ SMILES "OpenEye OEToolkits" 2.0.6 "CCCCCCCCCCCC(CC(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)O)O)O"
#
_pdbx_chem_comp_identifier.comp_id EHZ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier "~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
EHZ "Create component" 2018-03-23 EBI
EHZ "Initial release" 2018-06-06 RCSB
EHZ "Modify PCM" 2024-09-27 PDBE
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 EHZ SER None Lipid/lipid-like "Amino-acid side chain" "Any position" O7 CB ? ?
2 EHZ SER None Lipid/lipid-like "Amino-acid side chain" "Any position" P1 OG ? ?
#