data_EIA # _chem_comp.id EIA _chem_comp.name "(1Z,3E,5S,7R,8R,10R,11R,12S,15R,16S,18Z,25S)-11-ethyl-2-hydroxy-10-methyl-21,26-diazapentacyclo[23.2.1.05,16.07,15.08,12]octacosa-1(2),3,13,18-tetraene-20,27,28-trione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H38 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ikarugamycin _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-14 _chem_comp.pdbx_modified_date 2023-11-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 478.623 _chem_comp.one_letter_code ? _chem_comp.three_letter_code EIA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8JOO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal EIA C10 C1 C 0 1 N N N N N N -22.217 -0.529 18.870 -22.217 -0.529 18.870 C10 EIA 1 EIA C13 C2 C 0 1 N N N N N N -19.854 -0.061 24.747 -19.854 -0.061 24.747 C13 EIA 2 EIA C17 C3 C 0 1 N N N N N N -23.761 2.933 18.659 -23.761 2.933 18.659 C17 EIA 3 EIA C20 C4 C 0 1 N N N N N N -22.844 4.398 16.826 -22.844 4.398 16.826 C20 EIA 4 EIA C21 C5 C 0 1 N N N N N N -22.689 3.660 17.910 -22.689 3.660 17.910 C21 EIA 5 EIA C22 C6 C 0 1 N N N N N N -24.910 5.420 12.786 -24.910 5.420 12.786 C22 EIA 6 EIA C28 C7 C 0 1 N N N N N N -23.774 0.940 15.802 -23.774 0.940 15.802 C28 EIA 7 EIA C12 C8 C 0 1 N N S N N N -23.263 1.560 19.139 -23.263 1.560 19.139 C12 EIA 8 EIA C16 C9 C 0 1 N N N N N N -23.672 0.316 16.957 -23.672 0.316 16.957 C16 EIA 9 EIA C19 C10 C 0 1 N N N N N N -24.127 4.683 16.153 -24.127 4.683 16.153 C19 EIA 10 EIA C23 C11 C 0 1 N N N N N N -25.108 5.984 14.182 -25.108 5.984 14.182 C23 EIA 11 EIA C25 C12 C 0 1 N N N N N N -25.532 4.057 12.536 -25.532 4.057 12.536 C25 EIA 12 EIA C27 C13 C 0 1 N N N N N N -24.728 0.645 14.760 -24.728 0.645 14.760 C27 EIA 13 EIA C29 C14 C 0 1 N N N N N N -25.784 1.051 12.533 -25.784 1.051 12.533 C29 EIA 14 EIA C30 C15 C 0 1 N N N N N N -24.776 1.299 13.587 -24.776 1.299 13.587 C30 EIA 15 EIA C32 C16 C 0 1 N N S N N N -24.593 2.984 11.967 -24.593 2.984 11.967 C32 EIA 16 EIA N24 N1 N 0 1 N N N N N N -24.047 5.512 15.048 -24.047 5.512 15.048 N24 EIA 17 EIA C1 C17 C 0 1 N N R N N N -20.669 -0.644 23.588 -20.669 -0.644 23.588 C1 EIA 18 EIA C11 C18 C 0 1 N N S N N N -22.677 0.658 18.017 -22.677 0.658 18.017 C11 EIA 19 EIA C14 C19 C 0 1 N N N N N N -20.149 -0.700 26.087 -20.149 -0.700 26.087 C14 EIA 20 EIA C15 C20 C 0 1 N N N N N N -18.526 -2.035 23.134 -18.526 -2.035 23.134 C15 EIA 21 EIA C2 C21 C 0 1 N N R N N N -20.020 -1.851 22.883 -20.020 -1.851 22.883 C2 EIA 22 EIA C3 C22 C 0 1 N N N N N N -20.361 -1.677 21.392 -20.361 -1.677 21.392 C3 EIA 23 EIA C33 C23 C 0 1 N N N N N N -23.866 2.305 13.100 -23.866 2.305 13.100 C33 EIA 24 EIA C4 C24 C 0 1 N N R N N N -21.378 -0.550 21.278 -21.378 -0.550 21.278 C4 EIA 25 EIA C5 C25 C 0 1 N N S N N N -20.874 0.348 22.422 -20.874 0.348 22.422 C5 EIA 26 EIA C6 C26 C 0 1 N N R N N N -21.403 0.209 19.944 -21.403 0.209 19.944 C6 EIA 27 EIA C7 C27 C 0 1 N N R N N N -22.049 1.615 20.103 -22.049 1.615 20.103 C7 EIA 28 EIA C8 C28 C 0 1 N N N N N N -22.294 2.067 21.516 -22.294 2.067 21.516 C8 EIA 29 EIA C9 C29 C 0 1 N N N N N N -21.772 1.528 22.610 -21.772 1.528 22.610 C9 EIA 30 EIA N31 N2 N 0 1 N N N N N N -25.577 1.989 11.588 -25.577 1.989 11.588 N31 EIA 31 EIA O18 O1 O 0 1 N N N N N N -25.215 4.257 16.538 -25.215 4.257 16.538 O18 EIA 32 EIA O26 O2 O 0 1 N N N N N N -25.641 -0.305 15.029 -25.641 -0.305 15.029 O26 EIA 33 EIA O34 O3 O 0 1 N N N N N N -26.677 0.201 12.539 -26.677 0.201 12.539 O34 EIA 34 EIA O35 O4 O 0 1 N N N N N N -22.743 2.607 13.460 -22.743 2.607 13.460 O35 EIA 35 EIA H10B H1 H 0 0 N N N N N N -23.069 -1.072 19.306 -23.069 -1.072 19.306 H10B EIA 36 EIA H10A H2 H 0 0 N N N N N N -21.593 -1.227 18.294 -21.593 -1.227 18.294 H10A EIA 37 EIA H13A H3 H 0 0 N N N N N N -18.786 -0.201 24.524 -18.786 -0.201 24.524 H13A EIA 38 EIA H13B H4 H 0 0 N N N N N N -20.075 1.014 24.820 -20.076 1.014 24.820 H13B EIA 39 EIA H17B H5 H 0 0 N N N N N N -24.060 3.532 19.532 -24.060 3.532 19.531 H17B EIA 40 EIA H17A H6 H 0 0 N N N N N N -24.628 2.790 17.998 -24.628 2.790 17.998 H17A EIA 41 EIA HC20 H7 H 0 0 N N N N N N -21.954 4.831 16.394 -21.954 4.831 16.394 HC20 EIA 42 EIA HC21 H8 H 0 0 N N N N N N -21.684 3.572 18.296 -21.684 3.572 18.296 HC21 EIA 43 EIA H22B H9 H 0 0 N N N N N N -23.828 5.337 12.604 -23.828 5.337 12.604 H22B EIA 44 EIA H22A H10 H 0 0 N N N N N N -25.349 6.129 12.069 -25.349 6.129 12.069 H22A EIA 45 EIA HC28 H11 H 0 0 N N N N N N -23.080 1.747 15.617 -23.080 1.747 15.618 HC28 EIA 46 EIA HC12 H12 H 0 0 N N N N N N -24.089 1.027 19.632 -24.089 1.027 19.632 HC12 EIA 47 EIA HC16 H13 H 0 0 N N N N N N -24.354 -0.498 17.151 -24.354 -0.498 17.151 HC16 EIA 48 EIA H23B H14 H 0 0 N N N N N N -25.086 7.083 14.140 -25.086 7.083 14.140 H23B EIA 49 EIA H23A H15 H 0 0 N N N N N N -26.079 5.652 14.577 -26.079 5.652 14.577 H23A EIA 50 EIA H25B H16 H 0 0 N N N N N N -26.361 4.190 11.825 -26.361 4.190 11.825 H25B EIA 51 EIA H25A H17 H 0 0 N N N N N N -25.926 3.686 13.494 -25.926 3.686 13.494 H25A EIA 52 EIA HC32 H18 H 0 0 N N N N N N -23.942 3.342 11.156 -23.942 3.342 11.156 HC32 EIA 53 EIA HN24 H19 H 0 0 N N N N N N -23.128 5.830 14.815 -23.128 5.830 14.814 HN24 EIA 54 EIA HC1 H20 H 0 1 N N N N N N -21.656 -0.948 23.967 -21.656 -0.948 23.968 HC1 EIA 55 EIA HC11 H21 H 0 0 N N N N N N -21.802 1.153 17.571 -21.802 1.153 17.570 HC11 EIA 56 EIA H14B H22 H 0 0 N N N N N N -19.528 -0.229 26.863 -19.528 -0.229 26.863 H14B EIA 57 EIA H14C H23 H 0 0 N N N N N N -21.212 -0.560 26.334 -21.212 -0.560 26.334 H14C EIA 58 EIA H14A H24 H 0 0 N N N N N N -19.922 -1.775 26.038 -19.922 -1.775 26.038 H14A EIA 59 EIA H15C H25 H 0 0 N N N N N N -18.347 -2.154 24.213 -18.347 -2.154 24.213 H15C EIA 60 EIA H15B H26 H 0 0 N N N N N N -18.173 -2.931 22.603 -18.173 -2.931 22.603 H15B EIA 61 EIA H15A H27 H 0 0 N N N N N N -17.981 -1.153 22.767 -17.981 -1.153 22.767 H15A EIA 62 EIA HC2 H28 H 0 1 N N N N N N -20.533 -2.757 23.237 -20.533 -2.757 23.237 HC2 EIA 63 EIA HC3A H29 H 0 0 N N N N N N -20.789 -2.609 20.994 -20.789 -2.609 20.994 HC3A EIA 64 EIA HC3B H30 H 0 0 N N N N N N -19.453 -1.420 20.827 -19.452 -1.420 20.827 HC3B EIA 65 EIA HC4 H31 H 0 1 N N N N N N -22.385 -0.925 21.514 -22.385 -0.925 21.514 HC4 EIA 66 EIA HC5 H32 H 0 1 N N N N N N -19.881 0.722 22.132 -19.881 0.722 22.132 HC5 EIA 67 EIA HC6 H33 H 0 1 N N N N N N -20.371 0.334 19.585 -20.371 0.334 19.585 HC6 EIA 68 EIA HC7 H34 H 0 1 N N N N N N -21.339 2.329 19.661 -21.339 2.329 19.661 HC7 EIA 69 EIA HC8 H35 H 0 1 N N N N N N -22.957 2.909 21.653 -22.957 2.909 21.653 HC8 EIA 70 EIA HC9 H36 H 0 1 N N N N N N -21.986 1.924 23.592 -21.986 1.924 23.592 HC9 EIA 71 EIA HN31 H37 H 0 0 N N N N N N -26.056 1.998 10.710 -26.056 1.998 10.710 HN31 EIA 72 EIA HO26 H38 H 0 0 N N N N N N -26.229 -0.399 14.289 -26.229 -0.399 14.288 HO26 EIA 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EIA N31 C32 SING N N 1 EIA N31 C29 SING N N 2 EIA C32 C25 SING N N 3 EIA C32 C33 SING N N 4 EIA C29 O34 DOUB N N 5 EIA C29 C30 SING N N 6 EIA C25 C22 SING N N 7 EIA C22 C23 SING N N 8 EIA C33 O35 DOUB N N 9 EIA C33 C30 SING N N 10 EIA C30 C27 DOUB N Z 11 EIA C23 N24 SING N N 12 EIA C27 O26 SING N N 13 EIA C27 C28 SING N N 14 EIA N24 C19 SING N N 15 EIA C28 C16 DOUB N E 16 EIA C19 O18 DOUB N N 17 EIA C19 C20 SING N N 18 EIA C20 C21 DOUB N Z 19 EIA C16 C11 SING N N 20 EIA C21 C17 SING N N 21 EIA C11 C10 SING N N 22 EIA C11 C12 SING N N 23 EIA C17 C12 SING N N 24 EIA C10 C6 SING N N 25 EIA C12 C7 SING N N 26 EIA C6 C7 SING N N 27 EIA C6 C4 SING N N 28 EIA C7 C8 SING N N 29 EIA C4 C3 SING N N 30 EIA C4 C5 SING N N 31 EIA C3 C2 SING N N 32 EIA C8 C9 DOUB N N 33 EIA C5 C9 SING N N 34 EIA C5 C1 SING N N 35 EIA C2 C15 SING N N 36 EIA C2 C1 SING N N 37 EIA C1 C13 SING N N 38 EIA C13 C14 SING N N 39 EIA C10 H10B SING N N 40 EIA C10 H10A SING N N 41 EIA C13 H13A SING N N 42 EIA C13 H13B SING N N 43 EIA C17 H17B SING N N 44 EIA C17 H17A SING N N 45 EIA C20 HC20 SING N N 46 EIA C21 HC21 SING N N 47 EIA C22 H22B SING N N 48 EIA C22 H22A SING N N 49 EIA C28 HC28 SING N N 50 EIA C12 HC12 SING N N 51 EIA C16 HC16 SING N N 52 EIA C23 H23B SING N N 53 EIA C23 H23A SING N N 54 EIA C25 H25B SING N N 55 EIA C25 H25A SING N N 56 EIA C32 HC32 SING N N 57 EIA N24 HN24 SING N N 58 EIA C1 HC1 SING N N 59 EIA C11 HC11 SING N N 60 EIA C14 H14B SING N N 61 EIA C14 H14C SING N N 62 EIA C14 H14A SING N N 63 EIA C15 H15C SING N N 64 EIA C15 H15B SING N N 65 EIA C15 H15A SING N N 66 EIA C2 HC2 SING N N 67 EIA C3 HC3A SING N N 68 EIA C3 HC3B SING N N 69 EIA C4 HC4 SING N N 70 EIA C5 HC5 SING N N 71 EIA C6 HC6 SING N N 72 EIA C7 HC7 SING N N 73 EIA C8 HC8 SING N N 74 EIA C9 HC9 SING N N 75 EIA N31 HN31 SING N N 76 EIA O26 HO26 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor EIA InChI InChI 1.06 "InChI=1S/C29H38N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8-12,16-24,32H,3,5-7,13-15H2,1-2H3,(H,30,33)(H,31,35)/b8-4-,12-9+,27-25-/t16-,17-,18-,19+,20+,21-,22+,23+,24+/m1/s1" EIA InChIKey InChI 1.06 GHXZHWYUSAWISC-KZRBWAKNSA-N EIA SMILES_CANONICAL CACTVS 3.385 "CC[C@@H]1[C@H](C)C[C@@H]2[C@H]3C[C@H]4/C=C/C(=C5/C(=O)N[C@@H](CCCNC(=O)\C=C/C[C@@H]4[C@H]3C=C[C@@H]12)C5=O)O" EIA SMILES CACTVS 3.385 "CC[CH]1[CH](C)C[CH]2[CH]3C[CH]4C=CC(=C5C(=O)N[CH](CCCNC(=O)C=CC[CH]4[CH]3C=C[CH]12)C5=O)O" EIA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@@H]1[C@@H](C[C@H]2[C@H]1C=C[C@H]3[C@@H]2C[C@@H]/4[C@@H]3C/C=C\C(=O)NCCC[C@H]5C(=O)/C(=C(\C=C4)/O)/C(=O)N5)C" EIA SMILES "OpenEye OEToolkits" 2.0.7 "CCC1C(CC2C1C=CC3C2CC4C3CC=CC(=O)NCCCC5C(=O)C(=C(C=C4)O)C(=O)N5)C" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site EIA "Create component" 2023-06-14 PDBC EIA "Initial release" 2023-11-15 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id EIA _pdbx_chem_comp_synonyms.name ikarugamycin _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #