data_EJB # _chem_comp.id EJB _chem_comp.name "7-[5-S-(4-{[(2-ethylpyridin-3-yl)methyl]amino}butyl)-5-thio-beta-D-ribofuranosyl]-7H-pyrrolo[2,3-d]pyrimidin-4-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H32 N6 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-12-08 _chem_comp.pdbx_modified_date 2021-12-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 472.604 _chem_comp.one_letter_code ? _chem_comp.three_letter_code EJB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7T39 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal EJB C17 C1 C 0 1 Y N N 27.279 17.840 26.165 9.019 -1.216 0.490 C17 EJB 1 EJB C20 C2 C 0 1 Y N N 26.656 19.182 24.405 11.045 -0.228 0.966 C20 EJB 2 EJB C21 C3 C 0 1 Y N N 27.809 18.900 23.704 10.800 0.796 0.071 C21 EJB 3 EJB C22 C4 C 0 1 Y N N 28.736 18.045 24.276 9.607 0.806 -0.635 C22 EJB 4 EJB C11 C5 C 0 1 N N N 32.998 13.486 25.269 1.507 1.288 0.163 C11 EJB 5 EJB C12 C6 C 0 1 N N N 31.523 13.162 25.171 2.593 0.751 -0.772 C12 EJB 6 EJB C14 C7 C 0 1 N N N 29.810 14.875 24.521 5.028 0.234 -0.985 C14 EJB 7 EJB C19 C8 C 0 1 N N N 26.163 18.232 28.370 8.332 -3.485 -0.237 C19 EJB 8 EJB C1 C9 C 0 1 Y N N 40.240 8.437 28.279 -8.689 -0.757 -1.105 C1 EJB 9 EJB O1 O1 O 0 1 N N N 37.001 11.967 23.048 -3.818 4.016 0.628 O1 EJB 10 EJB C8 C10 C 0 1 N N S 36.123 11.688 24.133 -3.614 2.645 0.977 C8 EJB 11 EJB C7 C11 C 0 1 N N R 36.206 10.241 24.643 -4.929 1.847 0.826 C7 EJB 12 EJB O O2 O 0 1 N N N 36.526 9.277 23.644 -5.984 2.701 0.379 O EJB 13 EJB C9 C12 C 0 1 N N S 36.554 12.505 25.350 -2.648 1.970 -0.022 C9 EJB 14 EJB O2 O3 O 0 1 N N N 37.465 11.660 26.077 -3.166 0.633 -0.190 O2 EJB 15 EJB C6 C13 C 0 1 N N R 37.358 10.317 25.648 -4.602 0.785 -0.247 C6 EJB 16 EJB N3 N1 N 0 1 Y N N 37.183 9.482 26.827 -5.262 -0.484 0.073 N3 EJB 17 EJB C2 C14 C 0 1 Y N N 38.190 8.941 27.588 -6.548 -0.805 -0.262 C2 EJB 18 EJB N2 N2 N 0 1 Y N N 39.506 9.103 27.386 -7.521 -0.179 -0.922 N2 EJB 19 EJB N1 N3 N 0 1 Y N N 39.828 7.684 29.299 -8.964 -1.968 -0.655 N1 EJB 20 EJB C5 C15 C 0 1 Y N N 35.972 9.092 27.379 -4.680 -1.523 0.753 C5 EJB 21 EJB C4 C16 C 0 1 Y N N 36.185 8.309 28.461 -5.557 -2.532 0.877 C4 EJB 22 EJB C3 C17 C 0 1 Y N N 37.605 8.194 28.616 -6.793 -2.102 0.225 C3 EJB 23 EJB C C18 C 0 1 Y N N 38.500 7.549 29.501 -8.055 -2.675 0.011 C EJB 24 EJB N N4 N 0 1 N N N 38.085 6.826 30.546 -8.348 -3.943 0.480 N EJB 25 EJB C10 C19 C 0 1 N N N 35.534 12.990 26.366 -1.232 1.925 0.554 C10 EJB 26 EJB S S1 S 0 1 N N N 33.931 12.199 26.131 -0.092 1.265 -0.693 S EJB 27 EJB C13 C20 C 0 1 N N N 30.833 13.876 24.039 3.942 0.771 -0.050 C13 EJB 28 EJB N4 N5 N 0 1 N N N 30.434 15.975 25.255 6.323 0.253 -0.292 N4 EJB 29 EJB C15 C21 C 0 1 N N N 29.512 16.603 26.195 7.393 -0.257 -1.161 C15 EJB 30 EJB C16 C22 C 0 1 Y N N 28.496 17.496 25.532 8.703 -0.223 -0.417 C16 EJB 31 EJB N5 N6 N 0 1 Y N N 26.378 18.669 25.615 10.162 -1.190 1.147 N5 EJB 32 EJB C18 C23 C 0 1 N N N 26.894 17.269 27.503 8.044 -2.339 0.735 C18 EJB 33 EJB H1 H1 H 0 1 N N N 25.937 19.852 23.957 11.970 -0.241 1.523 H1 EJB 34 EJB H2 H2 H 0 1 N N N 27.985 19.336 22.732 11.527 1.582 -0.074 H2 EJB 35 EJB H3 H3 H 0 1 N N N 29.646 17.804 23.747 9.389 1.594 -1.341 H3 EJB 36 EJB H4 H4 H 0 1 N N N 33.404 13.596 24.253 1.452 0.661 1.053 H4 EJB 37 EJB H5 H5 H 0 1 N N N 33.116 14.434 25.815 1.749 2.310 0.452 H5 EJB 38 EJB H6 H6 H 0 1 N N N 31.038 13.452 26.115 2.351 -0.271 -1.061 H6 EJB 39 EJB H7 H7 H 0 1 N N N 31.412 12.078 25.020 2.648 1.377 -1.662 H7 EJB 40 EJB H8 H8 H 0 1 N N N 29.274 15.285 23.652 4.786 -0.789 -1.274 H8 EJB 41 EJB H9 H9 H 0 1 N N N 29.096 14.363 25.184 5.083 0.860 -1.875 H9 EJB 42 EJB H10 H10 H 0 1 N N N 25.915 17.749 29.327 8.225 -3.128 -1.262 H10 EJB 43 EJB H11 H11 H 0 1 N N N 26.797 19.111 28.557 9.348 -3.846 -0.082 H11 EJB 44 EJB H12 H12 H 0 1 N N N 25.237 18.548 27.867 7.626 -4.297 -0.060 H12 EJB 45 EJB H13 H13 H 0 1 N N N 41.310 8.519 28.160 -9.455 -0.217 -1.641 H13 EJB 46 EJB H14 H14 H 0 1 N N N 36.900 12.874 22.783 -4.462 4.472 1.187 H14 EJB 47 EJB H15 H15 H 0 1 N N N 35.081 11.929 23.874 -3.233 2.564 1.994 H15 EJB 48 EJB H16 H16 H 0 1 N N N 35.274 9.979 25.166 -5.196 1.369 1.768 H16 EJB 49 EJB H17 H17 H 0 1 N N N 36.558 8.412 24.036 -6.190 3.423 0.988 H17 EJB 50 EJB H18 H18 H 0 1 N N N 37.104 13.384 24.983 -2.655 2.502 -0.974 H18 EJB 51 EJB H19 H19 H 0 1 N N N 38.282 10.019 25.131 -4.907 1.134 -1.233 H19 EJB 52 EJB H20 H20 H 0 1 N N N 35.000 9.373 27.000 -3.669 -1.528 1.132 H20 EJB 53 EJB H21 H21 H 0 1 N N N 35.430 7.857 29.088 -5.383 -3.480 1.364 H21 EJB 54 EJB H22 H22 H 0 1 N N N 38.877 6.476 31.046 -9.225 -4.327 0.325 H22 EJB 55 EJB H23 H23 H 0 1 N N N 37.536 7.401 31.152 -7.676 -4.447 0.965 H23 EJB 56 EJB H24 H24 H 0 1 N N N 35.901 12.759 27.377 -0.921 2.931 0.834 H24 EJB 57 EJB H25 H25 H 0 1 N N N 35.414 14.078 26.259 -1.219 1.283 1.435 H25 EJB 58 EJB H26 H26 H 0 1 N N N 30.327 13.130 23.408 4.185 1.793 0.239 H26 EJB 59 EJB H27 H27 H 0 1 N N N 31.590 14.407 23.443 3.887 0.144 0.840 H27 EJB 60 EJB H28 H28 H 0 1 N N N 31.219 15.619 25.763 6.541 1.179 0.043 H28 EJB 61 EJB H30 H30 H 0 1 N N N 28.977 15.811 26.740 7.167 -1.283 -1.451 H30 EJB 62 EJB H31 H31 H 0 1 N N N 30.096 17.207 26.905 7.464 0.366 -2.052 H31 EJB 63 EJB H32 H32 H 0 1 N N N 26.250 16.393 27.336 8.151 -2.696 1.759 H32 EJB 64 EJB H33 H33 H 0 1 N N N 27.810 16.956 28.025 7.028 -1.977 0.580 H33 EJB 65 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EJB O1 C8 SING N N 1 EJB O C7 SING N N 2 EJB C21 C22 DOUB Y N 3 EJB C21 C20 SING Y N 4 EJB C13 C14 SING N N 5 EJB C13 C12 SING N N 6 EJB C8 C7 SING N N 7 EJB C8 C9 SING N N 8 EJB C22 C16 SING Y N 9 EJB C20 N5 DOUB Y N 10 EJB C14 N4 SING N N 11 EJB C7 C6 SING N N 12 EJB C12 C11 SING N N 13 EJB N4 C15 SING N N 14 EJB C11 S SING N N 15 EJB C9 O2 SING N N 16 EJB C9 C10 SING N N 17 EJB C16 C17 DOUB Y N 18 EJB C16 C15 SING N N 19 EJB N5 C17 SING Y N 20 EJB C6 O2 SING N N 21 EJB C6 N3 SING N N 22 EJB S C10 SING N N 23 EJB C17 C18 SING N N 24 EJB N3 C5 SING Y N 25 EJB N3 C2 SING Y N 26 EJB C5 C4 DOUB Y N 27 EJB N2 C2 DOUB Y N 28 EJB N2 C1 SING Y N 29 EJB C18 C19 SING N N 30 EJB C2 C3 SING Y N 31 EJB C1 N1 DOUB Y N 32 EJB C4 C3 SING Y N 33 EJB C3 C DOUB Y N 34 EJB N1 C SING Y N 35 EJB C N SING N N 36 EJB C20 H1 SING N N 37 EJB C21 H2 SING N N 38 EJB C22 H3 SING N N 39 EJB C11 H4 SING N N 40 EJB C11 H5 SING N N 41 EJB C12 H6 SING N N 42 EJB C12 H7 SING N N 43 EJB C14 H8 SING N N 44 EJB C14 H9 SING N N 45 EJB C19 H10 SING N N 46 EJB C19 H11 SING N N 47 EJB C19 H12 SING N N 48 EJB C1 H13 SING N N 49 EJB O1 H14 SING N N 50 EJB C8 H15 SING N N 51 EJB C7 H16 SING N N 52 EJB O H17 SING N N 53 EJB C9 H18 SING N N 54 EJB C6 H19 SING N N 55 EJB C5 H20 SING N N 56 EJB C4 H21 SING N N 57 EJB N H22 SING N N 58 EJB N H23 SING N N 59 EJB C10 H24 SING N N 60 EJB C10 H25 SING N N 61 EJB C13 H26 SING N N 62 EJB C13 H27 SING N N 63 EJB N4 H28 SING N N 64 EJB C15 H30 SING N N 65 EJB C15 H31 SING N N 66 EJB C18 H32 SING N N 67 EJB C18 H33 SING N N 68 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor EJB SMILES ACDLabs 12.01 "CCc1ncccc1CNCCCCSCC1OC(n2ccc3c(N)ncnc32)C(O)C1O" EJB InChI InChI 1.03 "InChI=1S/C23H32N6O3S/c1-2-17-15(6-5-9-26-17)12-25-8-3-4-11-33-13-18-19(30)20(31)23(32-18)29-10-7-16-21(24)27-14-28-22(16)29/h5-7,9-10,14,18-20,23,25,30-31H,2-4,8,11-13H2,1H3,(H2,24,27,28)/t18-,19-,20-,23-/m1/s1" EJB InChIKey InChI 1.03 SBQBBUZLJIAJBR-GLHSZLCASA-N EJB SMILES_CANONICAL CACTVS 3.385 "CCc1ncccc1CNCCCCSC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3ccc4c(N)ncnc34" EJB SMILES CACTVS 3.385 "CCc1ncccc1CNCCCCSC[CH]2O[CH]([CH](O)[CH]2O)n3ccc4c(N)ncnc34" EJB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCc1c(cccn1)CNCCCCSC[C@@H]2[C@H]([C@H]([C@@H](O2)n3ccc4c3ncnc4N)O)O" EJB SMILES "OpenEye OEToolkits" 2.0.7 "CCc1c(cccn1)CNCCCCSCC2C(C(C(O2)n3ccc4c3ncnc4N)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier EJB "SYSTEMATIC NAME" ACDLabs 12.01 "7-[5-S-(4-{[(2-ethylpyridin-3-yl)methyl]amino}butyl)-5-thio-beta-D-ribofuranosyl]-7H-pyrrolo[2,3-d]pyrimidin-4-amine" EJB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{S},5~{S})-2-(4-azanylpyrrolo[2,3-d]pyrimidin-7-yl)-5-[4-[(2-ethylpyridin-3-yl)methylamino]butylsulfanylmethyl]oxolane-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site EJB "Create component" 2021-12-08 RCSB EJB "Initial release" 2021-12-22 RCSB ##