data_EKR # _chem_comp.id EKR _chem_comp.name "N-(2,3-dihydro-1-benzofuran-7-ylmethyl)-8-[4-[(dimethylamino)methyl]phenyl]-[1,2,4]triazolo[4,3-c]pyrimidin-5-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H24 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-01-08 _chem_comp.pdbx_modified_date 2022-04-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 400.476 _chem_comp.one_letter_code ? _chem_comp.three_letter_code EKR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6LO6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal EKR C1 C1 C 0 1 Y N N 33.486 -10.431 -31.093 0.676 -0.318 1.394 C1 EKR 1 EKR C2 C2 C 0 1 Y N N 34.175 -10.116 -32.214 1.530 0.172 0.421 C2 EKR 2 EKR C3 C3 C 0 1 Y N N 34.625 -11.287 -33.017 0.930 0.829 -0.741 C3 EKR 3 EKR C11 C4 C 0 1 Y N N 34.460 -8.662 -32.589 2.999 0.037 0.552 C11 EKR 4 EKR C12 C5 C 0 1 Y N N 33.477 -7.658 -32.396 3.590 -1.226 0.539 C12 EKR 5 EKR C13 C6 C 0 1 Y N N 33.734 -6.312 -32.731 4.959 -1.345 0.661 C13 EKR 6 EKR C14 C7 C 0 1 Y N N 34.997 -5.960 -33.252 5.746 -0.215 0.796 C14 EKR 7 EKR C15 C8 C 0 1 Y N N 35.982 -6.944 -33.456 5.165 1.041 0.810 C15 EKR 8 EKR C16 C9 C 0 1 Y N N 35.716 -8.283 -33.109 3.798 1.173 0.682 C16 EKR 9 EKR C17 C10 C 0 1 N N N 35.314 -4.501 -33.600 7.240 -0.352 0.929 C17 EKR 10 EKR C19 C11 C 0 1 N N N 35.338 -2.249 -32.632 9.318 -0.215 -0.307 C19 EKR 11 EKR C20 C12 C 0 1 N N N 37.047 -3.885 -31.878 7.465 -1.500 -1.191 C20 EKR 12 EKR C21 C13 C 0 1 N N N 32.592 -14.418 -30.037 -3.386 -0.051 1.234 C21 EKR 13 EKR C22 C14 C 0 1 Y N N 31.109 -14.002 -30.043 -4.842 0.182 0.922 C22 EKR 14 EKR C23 C15 C 0 1 Y N N 30.173 -14.599 -30.922 -5.512 1.233 1.514 C23 EKR 15 EKR C24 C16 C 0 1 Y N N 28.821 -14.197 -30.929 -6.847 1.456 1.235 C24 EKR 16 EKR C25 C17 C 0 1 Y N N 28.350 -13.205 -30.029 -7.516 0.617 0.361 C25 EKR 17 EKR C26 C18 C 0 1 Y N N 29.293 -12.612 -29.183 -6.850 -0.434 -0.229 C26 EKR 18 EKR C27 C19 C 0 1 Y N N 30.643 -12.983 -29.197 -5.504 -0.660 0.034 C27 EKR 19 EKR C28 C20 C 0 1 N N N 29.172 -11.534 -28.129 -7.300 -1.510 -1.198 C28 EKR 20 EKR C29 C21 C 0 1 N N N 30.665 -11.089 -28.110 -6.151 -2.540 -1.090 C29 EKR 21 EKR N4 N1 N 0 1 Y N N 34.308 -12.497 -32.654 -0.444 0.919 -0.796 N4 EKR 22 EKR C5 C22 C 0 1 Y N N 33.599 -12.794 -31.572 -1.193 0.402 0.219 C5 EKR 23 EKR N6 N2 N 0 1 Y N N 33.232 -11.819 -30.808 -0.642 -0.185 1.256 N6 EKR 24 EKR N7 N3 N 0 1 Y N N 35.298 -11.232 -34.107 1.397 1.398 -1.830 N7 EKR 25 EKR N8 N4 N 0 1 Y N N 35.447 -12.591 -34.502 0.417 1.829 -2.546 N8 EKR 26 EKR C9 C23 C 0 1 Y N N 34.824 -13.239 -33.599 -0.723 1.563 -1.963 C9 EKR 27 EKR N10 N5 N 0 1 N N N 33.280 -14.047 -31.275 -2.562 0.498 0.154 N10 EKR 28 EKR N18 N6 N 0 1 N N N 35.669 -3.682 -32.409 7.856 -0.322 -0.404 N18 EKR 29 EKR O30 O1 O 0 1 N N N 31.429 -12.308 -28.265 -5.037 -1.728 -0.671 O30 EKR 30 EKR H1 H1 H 0 1 N N N 33.134 -9.658 -30.426 1.079 -0.813 2.265 H1 EKR 31 EKR H2 H2 H 0 1 N N N 32.515 -7.929 -31.986 2.977 -2.109 0.434 H2 EKR 32 EKR H3 H3 H 0 1 N N N 32.972 -5.559 -32.590 5.418 -2.323 0.651 H3 EKR 33 EKR H4 H4 H 0 1 N N N 36.939 -6.673 -33.877 5.784 1.919 0.917 H4 EKR 34 EKR H5 H5 H 0 1 N N N 36.484 -9.030 -33.243 3.346 2.154 0.693 H5 EKR 35 EKR H6 H6 H 0 1 N N N 36.161 -4.484 -34.302 7.629 0.472 1.528 H6 EKR 36 EKR H7 H7 H 0 1 N N N 34.431 -4.056 -34.081 7.476 -1.298 1.417 H7 EKR 37 EKR H8 H8 H 0 1 N N N 35.609 -1.666 -31.739 9.709 -1.073 0.240 H8 EKR 38 EKR H9 H9 H 0 1 N N N 35.900 -1.874 -33.500 9.748 -0.195 -1.308 H9 EKR 39 EKR H10 H10 H 0 1 N N N 34.259 -2.147 -32.822 9.580 0.702 0.220 H10 EKR 40 EKR H11 H11 H 0 1 N N N 37.203 -3.235 -31.004 6.382 -1.517 -1.306 H11 EKR 41 EKR H12 H12 H 0 1 N N N 37.174 -4.936 -31.581 7.935 -1.452 -2.173 H12 EKR 42 EKR H13 H13 H 0 1 N N N 37.781 -3.633 -32.658 7.790 -2.404 -0.676 H13 EKR 43 EKR H14 H14 H 0 1 N N N 32.652 -15.509 -29.913 -3.132 0.443 2.172 H14 EKR 44 EKR H15 H15 H 0 1 N N N 33.094 -13.924 -29.192 -3.201 -1.121 1.325 H15 EKR 45 EKR H16 H16 H 0 1 N N N 30.500 -15.375 -31.598 -4.990 1.886 2.199 H16 EKR 46 EKR H17 H17 H 0 1 N N N 28.134 -14.650 -31.629 -7.368 2.281 1.699 H17 EKR 47 EKR H18 H18 H 0 1 N N N 27.309 -12.921 -29.999 -8.560 0.786 0.141 H18 EKR 48 EKR H19 H19 H 0 1 N N N 28.498 -10.722 -28.438 -8.247 -1.947 -0.882 H19 EKR 49 EKR H20 H20 H 0 1 N N N 28.843 -11.934 -27.158 -7.375 -1.115 -2.211 H20 EKR 50 EKR H21 H21 H 0 1 N N N 30.909 -10.600 -27.155 -6.384 -3.301 -0.345 H21 EKR 51 EKR H22 H22 H 0 1 N N N 30.871 -10.397 -28.940 -5.951 -2.998 -2.058 H22 EKR 52 EKR H23 H23 H 0 1 N N N 34.730 -14.315 -33.613 -1.705 1.810 -2.338 H23 EKR 53 EKR H24 H24 H 0 1 N N N 32.698 -14.368 -32.022 -2.982 0.928 -0.606 H24 EKR 54 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EKR N8 N7 SING Y N 1 EKR N8 C9 DOUB Y N 2 EKR N7 C3 DOUB Y N 3 EKR C17 C14 SING N N 4 EKR C17 N18 SING N N 5 EKR C9 N4 SING Y N 6 EKR C15 C14 DOUB Y N 7 EKR C15 C16 SING Y N 8 EKR C14 C13 SING Y N 9 EKR C16 C11 DOUB Y N 10 EKR C3 N4 SING Y N 11 EKR C3 C2 SING Y N 12 EKR C13 C12 DOUB Y N 13 EKR N4 C5 SING Y N 14 EKR C19 N18 SING N N 15 EKR C11 C12 SING Y N 16 EKR C11 C2 SING N N 17 EKR N18 C20 SING N N 18 EKR C2 C1 DOUB Y N 19 EKR C5 N10 SING N N 20 EKR C5 N6 DOUB Y N 21 EKR N10 C21 SING N N 22 EKR C1 N6 SING Y N 23 EKR C24 C23 DOUB Y N 24 EKR C24 C25 SING Y N 25 EKR C23 C22 SING Y N 26 EKR C22 C21 SING N N 27 EKR C22 C27 DOUB Y N 28 EKR C25 C26 DOUB Y N 29 EKR C27 C26 SING Y N 30 EKR C27 O30 SING N N 31 EKR C26 C28 SING N N 32 EKR O30 C29 SING N N 33 EKR C28 C29 SING N N 34 EKR C1 H1 SING N N 35 EKR C12 H2 SING N N 36 EKR C13 H3 SING N N 37 EKR C15 H4 SING N N 38 EKR C16 H5 SING N N 39 EKR C17 H6 SING N N 40 EKR C17 H7 SING N N 41 EKR C19 H8 SING N N 42 EKR C19 H9 SING N N 43 EKR C19 H10 SING N N 44 EKR C20 H11 SING N N 45 EKR C20 H12 SING N N 46 EKR C20 H13 SING N N 47 EKR C21 H14 SING N N 48 EKR C21 H15 SING N N 49 EKR C23 H16 SING N N 50 EKR C24 H17 SING N N 51 EKR C25 H18 SING N N 52 EKR C28 H19 SING N N 53 EKR C28 H20 SING N N 54 EKR C29 H21 SING N N 55 EKR C29 H22 SING N N 56 EKR C9 H23 SING N N 57 EKR N10 H24 SING N N 58 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor EKR InChI InChI 1.03 "InChI=1S/C23H24N6O/c1-28(2)14-16-6-8-17(9-7-16)20-13-25-23(29-15-26-27-22(20)29)24-12-19-5-3-4-18-10-11-30-21(18)19/h3-9,13,15H,10-12,14H2,1-2H3,(H,24,25)" EKR InChIKey InChI 1.03 KSSJMTFPUHOMMH-UHFFFAOYSA-N EKR SMILES_CANONICAL CACTVS 3.385 "CN(C)Cc1ccc(cc1)c2cnc(NCc3cccc4CCOc34)n5cnnc25" EKR SMILES CACTVS 3.385 "CN(C)Cc1ccc(cc1)c2cnc(NCc3cccc4CCOc34)n5cnnc25" EKR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)Cc1ccc(cc1)c2cnc(n3c2nnc3)NCc4cccc5c4OCC5" EKR SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)Cc1ccc(cc1)c2cnc(n3c2nnc3)NCc4cccc5c4OCC5" # _pdbx_chem_comp_identifier.comp_id EKR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-(2,3-dihydro-1-benzofuran-7-ylmethyl)-8-[4-[(dimethylamino)methyl]phenyl]-[1,2,4]triazolo[4,3-c]pyrimidin-5-amine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site EKR "Create component" 2020-01-08 PDBJ EKR "Initial release" 2022-04-13 RCSB ##