data_EMY # _chem_comp.id EMY _chem_comp.name "S-(2-chloro-6-{[(4-hydroxyphenyl)methyl]amino}pyrimidin-4-yl) phenylethanethioate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H16 Cl N3 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-12-09 _chem_comp.pdbx_modified_date 2022-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 385.867 _chem_comp.one_letter_code ? _chem_comp.three_letter_code EMY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7T2X _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal EMY N1 N1 N 0 1 Y N N 1.571 6.281 -4.472 -1.116 -0.737 0.002 N1 EMY 1 EMY N3 N2 N 0 1 N N N 4.713 4.221 -5.653 2.960 -0.478 0.001 N3 EMY 2 EMY C4 C1 C 0 1 Y N N 1.995 4.042 -5.215 0.806 0.608 0.001 C4 EMY 3 EMY C5 C2 C 0 1 Y N N 2.660 6.472 -4.612 -0.354 -1.813 0.003 C5 EMY 4 EMY C6 C3 C 0 1 Y N N 3.444 4.735 -5.269 1.575 -0.552 0.002 C6 EMY 5 EMY C7 C4 C 0 1 Y N N 1.468 1.070 -6.038 -5.610 1.126 -0.002 C7 EMY 6 EMY C8 C5 C 0 1 Y N N 1.913 1.065 -7.256 -6.168 0.718 1.195 C8 EMY 7 EMY C10 C6 C 0 1 Y N N 2.115 -1.338 -7.280 -7.840 -0.509 -0.001 C10 EMY 8 EMY C13 C7 C 0 1 N N N 5.020 2.861 -5.487 3.623 0.828 -0.001 C13 EMY 9 EMY C15 C8 C 0 1 Y N N 7.181 2.815 -6.625 5.801 0.542 -1.199 C15 EMY 10 EMY C17 C9 C 0 1 Y N N 7.414 2.204 -8.938 7.860 0.275 -0.001 C17 EMY 11 EMY C1 C10 C 0 1 N N N 1.110 2.432 -5.486 -4.395 2.017 -0.003 C1 EMY 12 EMY C11 C11 C 0 1 Y N N 1.593 -1.331 -5.865 -7.275 -0.111 -1.199 C11 EMY 13 EMY C12 C12 C 0 1 Y N N 1.275 -0.215 -5.283 -6.164 0.711 -1.199 C12 EMY 14 EMY C14 C13 C 0 1 Y N N 5.904 2.650 -6.692 5.117 0.633 -0.001 C14 EMY 15 EMY C16 C14 C 0 1 Y N N 8.007 2.575 -7.855 7.171 0.363 -1.202 C16 EMY 16 EMY C18 C15 C 0 1 Y N N 5.942 2.026 -9.002 7.172 0.366 1.200 C18 EMY 17 EMY C19 C16 C 0 1 Y N N 5.229 2.224 -7.958 5.802 0.545 1.197 C19 EMY 18 EMY C2 C17 C 0 1 N N N -0.416 3.219 -5.003 -3.150 1.168 -0.001 C2 EMY 19 EMY C3 C18 C 0 1 Y N N 0.949 5.123 -4.689 -0.579 0.481 0.001 C3 EMY 20 EMY C9 C19 C 0 1 Y N N 2.265 -0.230 -7.931 -7.283 -0.099 1.196 C9 EMY 21 EMY N2 N3 N 0 1 Y N N 3.436 5.867 -4.942 0.962 -1.734 0.003 N2 EMY 22 EMY O1 O1 O 0 1 N N N -1.646 2.596 -4.962 -3.240 -0.041 0.000 O1 EMY 23 EMY O2 O2 O 0 1 N N N 8.134 1.966 -10.079 9.208 0.098 -0.001 O2 EMY 24 EMY S1 S1 S 0 1 N N N -0.318 4.717 -4.586 -1.608 1.911 -0.002 S1 EMY 25 EMY CL1 CL1 CL 0 0 N N N 3.117 8.112 -4.214 -1.105 -3.378 0.005 CL1 EMY 26 EMY H1 H1 H 0 1 N N N 4.818 4.420 -6.627 3.489 -1.291 0.002 H1 EMY 27 EMY H2 H2 H 0 1 N N N 1.769 3.022 -5.488 1.272 1.582 -0.000 H2 EMY 28 EMY H3 H3 H 0 1 N N N 2.031 1.997 -7.788 -5.733 1.038 2.130 H3 EMY 29 EMY H4 H4 H 0 1 N N N 2.366 -2.276 -7.754 -8.709 -1.151 -0.001 H4 EMY 30 EMY H5 H5 H 0 1 N N N 5.559 2.675 -4.546 3.329 1.384 -0.891 H5 EMY 31 EMY H6 H6 H 0 1 N N N 4.119 2.231 -5.525 3.330 1.386 0.889 H6 EMY 32 EMY H7 H7 H 0 1 N N N 7.648 3.120 -5.700 5.264 0.606 -2.133 H7 EMY 33 EMY H8 H8 H 0 1 N N N 1.720 2.496 -4.573 -4.406 2.645 -0.893 H8 EMY 34 EMY H9 H9 H 0 1 N N N 1.512 3.119 -6.245 -4.406 2.647 0.887 H9 EMY 35 EMY H10 H10 H 0 1 N N N 1.483 -2.263 -5.331 -7.711 -0.431 -2.134 H10 EMY 36 EMY H11 H11 H 0 1 N N N 0.880 -0.210 -4.278 -5.728 1.030 -2.135 H11 EMY 37 EMY H12 H12 H 0 1 N N N 9.078 2.711 -7.833 7.705 0.292 -2.138 H12 EMY 38 EMY H13 H13 H 0 1 N N N 5.473 1.730 -9.929 7.706 0.298 2.136 H13 EMY 39 EMY H14 H14 H 0 1 N N N 4.158 2.086 -7.990 5.265 0.617 2.132 H14 EMY 40 EMY H15 H15 H 0 1 N N N 2.638 -0.236 -8.945 -7.719 -0.418 2.131 H15 EMY 41 EMY H16 H16 H 0 1 N N N 7.545 1.703 -10.777 9.712 0.923 -0.003 H16 EMY 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EMY N1 C5 DOUB Y N 1 EMY N1 C3 SING Y N 2 EMY N3 C6 SING N N 3 EMY N3 C13 SING N N 4 EMY C4 C6 SING Y N 5 EMY C4 C3 DOUB Y N 6 EMY C5 N2 SING Y N 7 EMY C5 CL1 SING N N 8 EMY C6 N2 DOUB Y N 9 EMY C7 C8 DOUB Y N 10 EMY C7 C1 SING N N 11 EMY C7 C12 SING Y N 12 EMY C8 C9 SING Y N 13 EMY C10 C11 SING Y N 14 EMY C10 C9 DOUB Y N 15 EMY C13 C14 SING N N 16 EMY C15 C14 DOUB Y N 17 EMY C15 C16 SING Y N 18 EMY C17 C16 DOUB Y N 19 EMY C17 C18 SING Y N 20 EMY C17 O2 SING N N 21 EMY C11 C12 DOUB Y N 22 EMY C14 C19 SING Y N 23 EMY C18 C19 DOUB Y N 24 EMY C2 O1 DOUB N N 25 EMY C2 S1 SING N N 26 EMY C3 S1 SING N N 27 EMY C2 C1 SING N N 28 EMY N3 H1 SING N N 29 EMY C4 H2 SING N N 30 EMY C8 H3 SING N N 31 EMY C10 H4 SING N N 32 EMY C13 H5 SING N N 33 EMY C13 H6 SING N N 34 EMY C15 H7 SING N N 35 EMY C1 H8 SING N N 36 EMY C1 H9 SING N N 37 EMY C11 H10 SING N N 38 EMY C12 H11 SING N N 39 EMY C16 H12 SING N N 40 EMY C18 H13 SING N N 41 EMY C19 H14 SING N N 42 EMY C9 H15 SING N N 43 EMY O2 H16 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor EMY SMILES ACDLabs 12.01 "Clc1nc(NCc2ccc(O)cc2)cc(SC(=O)Cc2ccccc2)n1" EMY InChI InChI 1.03 "InChI=1S/C19H16ClN3O2S/c20-19-22-16(21-12-14-6-8-15(24)9-7-14)11-17(23-19)26-18(25)10-13-4-2-1-3-5-13/h1-9,11,24H,10,12H2,(H,21,22,23)" EMY InChIKey InChI 1.03 FGFZLZHWBMYAOE-UHFFFAOYSA-N EMY SMILES_CANONICAL CACTVS 3.385 "Oc1ccc(CNc2cc(SC(=O)Cc3ccccc3)nc(Cl)n2)cc1" EMY SMILES CACTVS 3.385 "Oc1ccc(CNc2cc(SC(=O)Cc3ccccc3)nc(Cl)n2)cc1" EMY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC(=O)Sc2cc(nc(n2)Cl)NCc3ccc(cc3)O" EMY SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC(=O)Sc2cc(nc(n2)Cl)NCc3ccc(cc3)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier EMY "SYSTEMATIC NAME" ACDLabs 12.01 "S-(2-chloro-6-{[(4-hydroxyphenyl)methyl]amino}pyrimidin-4-yl) phenylethanethioate" EMY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{S}-[2-chloranyl-6-[(4-hydroxyphenyl)methylamino]pyrimidin-4-yl] 2-phenylethanethioate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site EMY "Create component" 2021-12-09 RCSB EMY "Initial release" 2022-06-22 RCSB #