data_EPD # _chem_comp.id EPD _chem_comp.name "EPOTHILONE D" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H41 N O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-07-03 _chem_comp.pdbx_modified_date 2012-01-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 491.683 _chem_comp.one_letter_code ? _chem_comp.three_letter_code EPD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1PKF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal EPD C51 C51 C 0 1 N N N 9.877 38.845 17.004 1.038 4.593 -0.465 C51 EPD 1 EPD C5 C5 C 0 1 N N N 8.465 39.367 17.163 0.417 3.302 0.026 C5 EPD 2 EPD C4 C4 C 0 1 N N N 7.584 38.471 17.562 1.128 2.517 0.792 C4 EPD 3 EPD C3 C3 C 0 1 N N N 6.194 38.843 17.984 0.596 1.218 1.330 C3 EPD 4 EPD C2 C2 C 0 1 N N S 5.119 38.061 17.160 1.053 0.060 0.441 C2 EPD 5 EPD C20 C20 C 0 1 N N N 3.617 38.395 17.597 2.557 -0.053 0.490 C20 EPD 6 EPD C21 C21 C 0 1 N N N 2.517 38.017 16.614 3.243 -0.422 1.780 C21 EPD 7 EPD C22 C22 C 0 1 N N N 3.477 39.046 18.768 3.275 0.171 -0.603 C22 EPD 8 EPD C23 C23 C 0 1 Y N N 2.231 39.457 19.307 4.730 -0.086 -0.596 C23 EPD 9 EPD C24 C24 C 0 1 Y N N 1.895 39.945 20.458 5.534 0.215 -1.638 C24 EPD 10 EPD S1 S1 S 0 1 Y N N 0.196 40.319 20.571 7.177 -0.253 -1.206 S1 EPD 11 EPD C25 C25 C 0 1 Y N N 0.076 39.776 18.937 6.633 -0.803 0.319 C25 EPD 12 EPD C27 C27 C 0 1 N N N -1.288 39.821 18.309 7.518 -1.405 1.379 C27 EPD 13 EPD N26 N26 N 0 1 Y N N 1.134 39.386 18.393 5.363 -0.627 0.436 N26 EPD 14 EPD C6 C6 C 0 1 N N N 8.207 40.874 17.389 -0.995 2.961 -0.384 C6 EPD 15 EPD C7 C7 C 0 1 N N N 8.797 41.770 16.308 -1.972 3.872 0.361 C7 EPD 16 EPD C8 C8 C 0 1 N N N 7.928 41.637 15.044 -3.414 3.580 0.000 C8 EPD 17 EPD C9 C9 C 0 1 N N S 6.876 42.604 14.562 -3.939 2.260 0.557 C9 EPD 18 EPD C91 C91 C 0 1 N N N 5.573 42.762 15.239 -3.381 1.985 1.951 C91 EPD 19 EPD C10 C10 C 0 1 N N S 6.479 41.811 13.216 -3.615 1.113 -0.387 C10 EPD 20 EPD O10 O10 O 0 1 N N N 7.712 41.773 12.397 -3.824 1.525 -1.740 O10 EPD 21 EPD C11 C11 C 0 1 N N R 5.166 42.305 12.482 -4.496 -0.108 -0.103 C11 EPD 22 EPD C28 C28 C 0 1 N N N 5.245 43.715 11.917 -5.755 -0.025 -0.976 C28 EPD 23 EPD C12 C12 C 0 1 N N N 4.777 41.362 11.345 -3.710 -1.337 -0.508 C12 EPD 24 EPD O12 O12 O 0 1 N N N 5.467 41.475 10.321 -3.271 -1.355 -1.635 O12 EPD 25 EPD C13 C13 C 0 1 N N N 3.610 40.380 11.606 -3.493 -2.485 0.437 C13 EPD 26 EPD C30 C30 C 0 1 N N N 2.303 41.055 11.945 -3.203 -1.961 1.846 C30 EPD 27 EPD C29 C29 C 0 1 N N N 3.459 39.337 10.497 -4.789 -3.318 0.503 C29 EPD 28 EPD C14 C14 C 0 1 N N S 3.914 39.566 12.963 -2.376 -3.410 -0.030 C14 EPD 29 EPD O14 O14 O 0 1 N N N 2.801 38.797 13.434 -2.288 -3.443 -1.456 O14 EPD 30 EPD C15 C15 C 0 1 N N N 4.993 38.522 12.886 -1.024 -3.098 0.577 C15 EPD 31 EPD C16 C16 C 0 1 N N N 5.265 37.915 14.307 -0.513 -1.735 0.195 C16 EPD 32 EPD O16 O16 O 0 1 N N N 5.875 36.873 14.402 -0.977 -1.140 -0.749 O16 EPD 33 EPD O1 O1 O 0 1 N N N 4.799 38.605 15.511 0.472 -1.177 0.919 O1 EPD 34 EPD H511 1H51 H 0 0 N N N 10.622 39.602 16.666 2.053 4.678 -0.079 H511 EPD 35 EPD H512 2H51 H 0 0 N N N 10.218 38.362 17.949 1.062 4.593 -1.555 H512 EPD 36 EPD H513 3H51 H 0 0 N N N 9.887 37.963 16.321 0.444 5.438 -0.115 H513 EPD 37 EPD H4 H4 H 0 1 N N N 7.994 37.447 17.543 2.133 2.825 1.050 H4 EPD 38 EPD H31 1H3 H 0 1 N N N 6.049 38.704 19.080 0.995 1.069 2.339 H31 EPD 39 EPD H32 2H3 H 0 1 N N N 6.030 39.944 17.927 -0.485 1.240 1.382 H32 EPD 40 EPD H2 H2 H 0 1 N N N 5.552 37.042 17.294 0.741 0.244 -0.584 H2 EPD 41 EPD H211 1H21 H 0 0 N N N 1.470 38.249 16.918 3.432 -1.495 1.797 H211 EPD 42 EPD H212 2H21 H 0 0 N N N 2.728 38.478 15.621 4.189 0.115 1.855 H212 EPD 43 EPD H213 3H21 H 0 0 N N N 2.599 36.934 16.358 2.605 -0.152 2.621 H213 EPD 44 EPD H22 H22 H 0 1 N N N 4.418 39.250 19.305 2.795 0.540 -1.497 H22 EPD 45 EPD H24 H24 H 0 1 N N N 2.770 40.018 21.124 5.226 0.663 -2.571 H24 EPD 46 EPD H271 1H27 H 0 0 N N N -1.365 39.470 17.253 8.547 -1.433 1.021 H271 EPD 47 EPD H272 2H27 H 0 0 N N N -2.010 39.257 18.944 7.465 -0.799 2.284 H272 EPD 48 EPD H273 3H27 H 0 0 N N N -1.703 40.852 18.391 7.183 -2.418 1.600 H273 EPD 49 EPD H61 1H6 H 0 1 N N N 7.116 41.071 17.509 -1.105 3.136 -1.461 H61 EPD 50 EPD H62 2H6 H 0 1 N N N 8.567 41.186 18.396 -1.197 1.919 -0.167 H62 EPD 51 EPD H71 1H7 H 0 1 N N N 8.910 42.827 16.641 -1.785 3.841 1.426 H71 EPD 52 EPD H72 2H7 H 0 1 N N N 9.873 41.556 16.113 -1.759 4.910 0.032 H72 EPD 53 EPD H81 1H8 H 0 1 N N N 8.637 41.503 14.194 -4.048 4.385 0.402 H81 EPD 54 EPD H82 2H8 H 0 1 N N N 7.424 40.644 15.118 -3.532 3.590 -1.087 H82 EPD 55 EPD H9 H9 H 0 1 N N N 7.307 43.630 14.619 -5.036 2.353 0.640 H9 EPD 56 EPD H911 1H91 H 0 0 N N N 4.795 43.477 14.882 -3.678 2.788 2.626 H911 EPD 57 EPD H912 2H91 H 0 0 N N N 5.100 41.753 15.299 -3.775 1.038 2.319 H912 EPD 58 EPD H913 3H91 H 0 0 N N N 5.776 42.992 16.310 -2.294 1.933 1.903 H913 EPD 59 EPD H10 H10 H 0 1 N N N 6.146 40.774 13.457 -2.571 0.817 -0.259 H10 EPD 60 EPD H3 H3 H 0 1 N N N 7.478 41.305 11.603 -3.634 0.838 -2.394 H3 EPD 61 EPD H11 H11 H 0 1 N N N 4.393 42.307 13.286 -4.780 -0.141 0.933 H11 EPD 62 EPD H281 1H28 H 0 0 N N N 4.320 44.062 11.400 -5.468 -0.013 -2.028 H281 EPD 63 EPD H282 2H28 H 0 0 N N N 5.535 44.436 12.716 -6.389 -0.890 -0.782 H282 EPD 64 EPD H283 3H28 H 0 0 N N N 6.125 43.811 11.240 -6.301 0.888 -0.739 H283 EPD 65 EPD H301 1H30 H 0 0 N N N 1.462 40.347 12.133 -4.049 -1.368 2.194 H301 EPD 66 EPD H302 2H30 H 0 0 N N N 2.432 41.747 12.809 -3.047 -2.802 2.521 H302 EPD 67 EPD H303 3H30 H 0 0 N N N 2.025 41.790 11.154 -2.308 -1.340 1.826 H303 EPD 68 EPD H291 1H29 H 0 0 N N N 2.618 38.629 10.685 -5.030 -3.695 -0.490 H291 EPD 69 EPD H292 2H29 H 0 0 N N N 3.356 39.824 9.499 -4.648 -4.156 1.186 H292 EPD 70 EPD H293 3H29 H 0 0 N N N 4.415 38.787 10.331 -5.606 -2.691 0.862 H293 EPD 71 EPD H14 H14 H 0 1 N N N 4.204 40.415 13.623 -2.653 -4.437 0.292 H14 EPD 72 EPD H1 H1 H 0 1 N N N 2.980 38.317 14.234 -1.589 -4.021 -1.793 H1 EPD 73 EPD H151 1H15 H 0 0 N N N 4.755 37.732 12.135 -1.015 -3.225 1.653 H151 EPD 74 EPD H152 2H15 H 0 0 N N N 5.923 38.919 12.418 -0.294 -3.836 0.175 H152 EPD 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EPD C51 C5 SING N N 1 EPD C51 H511 SING N N 2 EPD C51 H512 SING N N 3 EPD C51 H513 SING N N 4 EPD C5 C4 DOUB N Z 5 EPD C5 C6 SING N N 6 EPD C4 C3 SING N N 7 EPD C4 H4 SING N N 8 EPD C3 C2 SING N N 9 EPD C3 H31 SING N N 10 EPD C3 H32 SING N N 11 EPD C2 C20 SING N N 12 EPD C2 O1 SING N N 13 EPD C2 H2 SING N N 14 EPD C20 C21 SING N N 15 EPD C20 C22 DOUB N E 16 EPD C21 H211 SING N N 17 EPD C21 H212 SING N N 18 EPD C21 H213 SING N N 19 EPD C22 C23 SING N N 20 EPD C22 H22 SING N N 21 EPD C23 C24 DOUB Y N 22 EPD C23 N26 SING Y N 23 EPD C24 S1 SING Y N 24 EPD C24 H24 SING N N 25 EPD S1 C25 SING Y N 26 EPD C25 C27 SING N N 27 EPD C25 N26 DOUB Y N 28 EPD C27 H271 SING N N 29 EPD C27 H272 SING N N 30 EPD C27 H273 SING N N 31 EPD C6 C7 SING N N 32 EPD C6 H61 SING N N 33 EPD C6 H62 SING N N 34 EPD C7 C8 SING N N 35 EPD C7 H71 SING N N 36 EPD C7 H72 SING N N 37 EPD C8 C9 SING N N 38 EPD C8 H81 SING N N 39 EPD C8 H82 SING N N 40 EPD C9 C91 SING N N 41 EPD C9 C10 SING N N 42 EPD C9 H9 SING N N 43 EPD C91 H911 SING N N 44 EPD C91 H912 SING N N 45 EPD C91 H913 SING N N 46 EPD C10 O10 SING N N 47 EPD C10 C11 SING N N 48 EPD C10 H10 SING N N 49 EPD O10 H3 SING N N 50 EPD C11 C28 SING N N 51 EPD C11 C12 SING N N 52 EPD C11 H11 SING N N 53 EPD C28 H281 SING N N 54 EPD C28 H282 SING N N 55 EPD C28 H283 SING N N 56 EPD C12 O12 DOUB N N 57 EPD C12 C13 SING N N 58 EPD C13 C30 SING N N 59 EPD C13 C29 SING N N 60 EPD C13 C14 SING N N 61 EPD C30 H301 SING N N 62 EPD C30 H302 SING N N 63 EPD C30 H303 SING N N 64 EPD C29 H291 SING N N 65 EPD C29 H292 SING N N 66 EPD C29 H293 SING N N 67 EPD C14 O14 SING N N 68 EPD C14 C15 SING N N 69 EPD C14 H14 SING N N 70 EPD O14 H1 SING N N 71 EPD C15 C16 SING N N 72 EPD C15 H151 SING N N 73 EPD C15 H152 SING N N 74 EPD C16 O16 DOUB N N 75 EPD C16 O1 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor EPD SMILES ACDLabs 10.04 "O=C1C(C)C(O)C(C)CCCC(=CCC(OC(=O)CC(O)C1(C)C)/C(=C/c2nc(sc2)C)C)C" EPD InChI InChI 1.03 "InChI=1S/C27H41NO5S/c1-16-9-8-10-17(2)25(31)19(4)26(32)27(6,7)23(29)14-24(30)33-22(12-11-16)18(3)13-21-15-34-20(5)28-21/h11,13,15,17,19,22-23,25,29,31H,8-10,12,14H2,1-7H3/b16-11-,18-13+/t17-,19+,22-,23-,25-/m0/s1" EPD InChIKey InChI 1.03 XOZIUKBZLSUILX-GIQCAXHBSA-N EPD SMILES_CANONICAL CACTVS 3.385 "C[C@H]1CCCC(=C\C[C@H](OC(=O)C[C@H](O)C(C)(C)C(=O)[C@H](C)[C@H]1O)\C(C)=C\c2csc(C)n2)/C" EPD SMILES CACTVS 3.385 "C[CH]1CCCC(=CC[CH](OC(=O)C[CH](O)C(C)(C)C(=O)[CH](C)[CH]1O)C(C)=Cc2csc(C)n2)C" EPD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "Cc1nc(cs1)/C=C(\C)/[C@@H]2C/C=C(\CCC[C@@H]([C@@H]([C@H](C(=O)C([C@H](CC(=O)O2)O)(C)C)C)O)C)/C" EPD SMILES "OpenEye OEToolkits" 1.7.5 "Cc1nc(cs1)C=C(C)C2CC=C(CCCC(C(C(C(=O)C(C(CC(=O)O2)O)(C)C)C)O)C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier EPD "SYSTEMATIC NAME" ACDLabs 10.04 "(4S,7R,8S,9S,13Z,16S)-4,8-dihydroxy-5,5,7,9,13-pentamethyl-16-[(E)-1-methyl-2-(2-methyl-1,3-thiazol-4-yl)ethenyl]oxacyclohexadec-13-ene-2,6-dione" EPD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(4S,7R,8S,9S,13Z,16S)-4,8-dihydroxy-5,5,7,9,13-pentamethyl-16-[(E)-1-(2-methyl-1,3-thiazol-4-yl)prop-1-en-2-yl]-1-oxacyclohexadec-13-ene-2,6-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site EPD "Create component" 2003-07-03 RCSB EPD "Modify descriptor" 2011-06-04 RCSB EPD "Modify descriptor" 2012-01-05 RCSB EPD "Modify coordinates" 2012-01-05 RCSB #