data_EQ3
#
_chem_comp.id EQ3
_chem_comp.name "(3'R)-3'-hydroxy-beta,beta-caroten-4-one"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C40 H54 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
;3'-Hydroxyechinenone; 3'-OH-Echinenone
;
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-12-19
_chem_comp.pdbx_modified_date 2020-05-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces HEQ
_chem_comp.formula_weight 566.856
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code EQ3
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5UI2
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
EQ3 C32 C1 C 0 1 N N N 48.290 -6.395 21.850 -12.965 1.544 1.277 C32 EQ3 1
EQ3 C1 C2 C 0 1 N N N 46.838 -6.840 21.680 -12.334 0.159 1.117 C1 EQ3 2
EQ3 C31 C3 C 0 1 N N N 46.847 -8.287 21.203 -11.628 -0.229 2.418 C31 EQ3 3
EQ3 C2 C4 C 0 1 N N N 46.154 -6.861 23.054 -13.428 -0.865 0.809 C2 EQ3 4
EQ3 C3 C5 C 0 1 N N R 45.757 -5.481 23.574 -13.950 -0.608 -0.609 C3 EQ3 5
EQ3 O3 O1 O 0 1 N N N 45.090 -5.622 24.828 -15.095 -1.427 -0.855 O3 EQ3 6
EQ3 C4 C6 C 0 1 N N N 44.814 -4.806 22.588 -12.844 -0.961 -1.606 C4 EQ3 7
EQ3 C5 C7 C 0 1 N N N 45.217 -4.983 21.131 -11.558 -0.297 -1.205 C5 EQ3 8
EQ3 C33 C8 C 0 1 N N N 44.515 -4.047 20.181 -10.464 -0.186 -2.236 C33 EQ3 9
EQ3 C6 C9 C 0 1 N N N 46.121 -5.899 20.694 -11.331 0.195 0.001 C6 EQ3 10
EQ3 C7 C10 C 0 1 N N N 46.455 -5.872 19.233 -10.070 0.789 0.255 C7 EQ3 11
EQ3 C8 C11 C 0 1 N N N 46.055 -6.737 18.288 -8.930 0.069 0.078 C8 EQ3 12
EQ3 C9 C12 C 0 1 N N N 46.448 -6.531 16.868 -7.678 0.689 0.218 C9 EQ3 13
EQ3 C34 C13 C 0 1 N N N 47.883 -6.221 16.524 -7.597 2.154 0.564 C34 EQ3 14
EQ3 C10 C14 C 0 1 N N N 45.478 -6.641 15.929 -6.533 -0.035 0.041 C10 EQ3 15
EQ3 C11 C15 C 0 1 N N N 45.609 -6.412 14.483 -5.284 0.583 0.180 C11 EQ3 16
EQ3 C12 C16 C 0 1 N N N 44.828 -7.012 13.565 -4.129 -0.148 0.001 C12 EQ3 17
EQ3 C13 C17 C 0 1 N N N 44.940 -6.695 12.112 -2.882 0.470 0.141 C13 EQ3 18
EQ3 C35 C18 C 0 1 N N N 46.279 -6.438 11.471 -2.802 1.934 0.487 C35 EQ3 19
EQ3 C14 C19 C 0 1 N N N 43.792 -6.590 11.401 -1.726 -0.262 -0.039 C14 EQ3 20
EQ3 C15 C20 C 0 1 N N N 43.689 -6.177 9.994 -0.481 0.355 0.101 C15 EQ3 21
EQ3 C16 C21 C 0 1 N N N 42.702 -6.560 9.180 0.677 -0.378 -0.079 C16 EQ3 22
EQ3 C17 C22 C 0 1 N N N 42.639 -6.019 7.810 1.922 0.238 0.061 C17 EQ3 23
EQ3 C18 C23 C 0 1 N N N 41.488 -5.900 7.100 3.080 -0.495 -0.119 C18 EQ3 24
EQ3 C36 C24 C 0 1 N N N 40.175 -6.390 7.651 2.999 -1.959 -0.465 C36 EQ3 25
EQ3 C19 C25 C 0 1 N N N 41.516 -5.246 5.767 4.324 0.122 0.020 C19 EQ3 26
EQ3 C20 C26 C 0 1 N N N 40.429 -5.171 4.986 5.483 -0.612 -0.160 C20 EQ3 27
EQ3 C21 C27 C 0 1 N N N 40.436 -4.486 3.694 6.726 0.004 -0.020 C21 EQ3 28
EQ3 C22 C28 C 0 1 N N N 39.491 -4.637 2.737 7.885 -0.729 -0.200 C22 EQ3 29
EQ3 C37 C29 C 0 1 N N N 38.305 -5.556 2.908 7.805 -2.194 -0.546 C37 EQ3 30
EQ3 C23 C30 C 0 1 N N N 39.616 -3.793 1.529 9.128 -0.113 -0.061 C23 EQ3 31
EQ3 C24 C31 C 0 1 N N N 38.518 -3.426 0.860 10.288 -0.847 -0.241 C24 EQ3 32
EQ3 C25 C32 C 0 1 N N N 38.489 -2.497 -0.302 11.530 -0.245 -0.047 C25 EQ3 33
EQ3 C26 C33 C 0 1 N N N 38.357 -2.930 -1.590 11.856 0.891 -0.760 C26 EQ3 34
EQ3 C38 C34 C 0 1 N N N 38.454 -4.387 -1.959 10.862 1.455 -1.742 C38 EQ3 35
EQ3 C27 C35 C 0 1 N N N 38.041 -1.985 -2.680 13.081 1.527 -0.590 C27 EQ3 36
EQ3 O27 O2 O 0 1 N N N 37.684 -2.392 -3.786 13.334 2.528 -1.234 O27 EQ3 37
EQ3 C28 C36 C 0 1 N N N 38.105 -0.485 -2.458 14.097 0.989 0.383 C28 EQ3 38
EQ3 C29 C37 C 0 1 N N N 38.856 -0.138 -1.175 13.373 0.273 1.526 C29 EQ3 39
EQ3 C30 C38 C 0 1 N N N 38.455 -0.995 0.031 12.499 -0.840 0.941 C30 EQ3 40
EQ3 C40 C39 C 0 1 N N N 39.415 -0.628 1.168 13.380 -1.872 0.235 C40 EQ3 41
EQ3 C39 C40 C 0 1 N N N 37.037 -0.617 0.480 11.722 -1.518 2.072 C39 EQ3 42
EQ3 H1 H1 H 0 1 N N N 48.800 -7.068 22.554 -13.685 1.523 2.095 H1 EQ3 43
EQ3 H2 H2 H 0 1 N N N 48.800 -6.429 20.876 -12.187 2.275 1.496 H2 EQ3 44
EQ3 H3 H3 H 0 1 N N N 48.315 -5.367 22.242 -13.473 1.820 0.353 H3 EQ3 45
EQ3 H4 H4 H 0 1 N N N 47.369 -8.914 21.941 -12.365 -0.336 3.214 H4 EQ3 46
EQ3 H5 H5 H 0 1 N N N 45.812 -8.641 21.088 -11.103 -1.174 2.279 H5 EQ3 47
EQ3 H6 H6 H 0 1 N N N 47.366 -8.351 20.235 -10.912 0.547 2.688 H6 EQ3 48
EQ3 H7 H7 H 0 1 N N N 45.245 -7.476 22.978 -13.016 -1.872 0.871 H7 EQ3 49
EQ3 H8 H8 H 0 1 N N N 46.846 -7.317 23.777 -14.243 -0.756 1.525 H8 EQ3 50
EQ3 H9 H9 H 0 1 N N N 46.662 -4.866 23.687 -14.222 0.442 -0.715 H9 EQ3 51
EQ3 H10 H10 H 0 1 N N N 45.671 -6.043 25.451 -15.477 -1.315 -1.736 H10 EQ3 52
EQ3 H11 H11 H 0 1 N N N 44.790 -3.729 22.813 -12.703 -2.041 -1.623 H11 EQ3 53
EQ3 H12 H12 H 0 1 N N N 43.809 -5.231 22.724 -13.130 -0.618 -2.600 H12 EQ3 54
EQ3 H13 H13 H 0 1 N N N 43.832 -3.395 20.745 -10.820 -0.582 -3.187 H13 EQ3 55
EQ3 H14 H14 H 0 1 N N N 45.260 -3.430 19.657 -10.186 0.861 -2.359 H14 EQ3 56
EQ3 H15 H15 H 0 1 N N N 43.941 -4.632 19.447 -9.595 -0.756 -1.907 H15 EQ3 57
EQ3 H16 H16 H 0 1 N N N 47.091 -5.064 18.903 -10.013 1.815 0.588 H16 EQ3 58
EQ3 H17 H17 H 0 1 N N N 45.445 -7.586 18.560 -8.988 -0.981 -0.170 H17 EQ3 59
EQ3 H18 H18 H 0 1 N N N 48.482 -6.182 17.446 -7.572 2.270 1.648 H18 EQ3 60
EQ3 H19 H19 H 0 1 N N N 48.279 -7.006 15.863 -6.691 2.580 0.132 H19 EQ3 61
EQ3 H20 H20 H 0 1 N N N 47.935 -5.249 16.012 -8.469 2.671 0.163 H20 EQ3 62
EQ3 H21 H21 H 0 1 N N N 44.499 -6.929 16.282 -6.591 -1.085 -0.208 H21 EQ3 63
EQ3 H22 H22 H 0 1 N N N 46.371 -5.728 14.139 -5.226 1.633 0.429 H22 EQ3 64
EQ3 H23 H23 H 0 1 N N N 44.101 -7.742 13.889 -4.187 -1.197 -0.247 H23 EQ3 65
EQ3 H24 H24 H 0 1 N N N 47.076 -6.576 12.217 -2.777 2.051 1.571 H24 EQ3 66
EQ3 H25 H25 H 0 1 N N N 46.429 -7.143 10.640 -1.896 2.360 0.055 H25 EQ3 67
EQ3 H26 H26 H 0 1 N N N 46.310 -5.407 11.088 -3.673 2.451 0.086 H26 EQ3 68
EQ3 H27 H27 H 0 1 N N N 42.872 -6.831 11.913 -1.784 -1.312 -0.287 H27 EQ3 69
EQ3 H28 H28 H 0 1 N N N 44.455 -5.527 9.596 -0.423 1.404 0.349 H28 EQ3 70
EQ3 H29 H29 H 0 1 N N N 41.955 -7.261 9.523 0.619 -1.427 -0.327 H29 EQ3 71
EQ3 H30 H30 H 0 1 N N N 43.560 -5.699 7.345 1.980 1.288 0.309 H30 EQ3 72
EQ3 H31 H31 H 0 1 N N N 40.338 -6.844 8.640 2.974 -2.075 -1.549 H31 EQ3 73
EQ3 H32 H32 H 0 1 N N N 39.479 -5.544 7.747 3.871 -2.476 -0.064 H32 EQ3 74
EQ3 H33 H33 H 0 1 N N N 39.748 -7.140 6.969 2.094 -2.385 -0.033 H33 EQ3 75
EQ3 H34 H34 H 0 1 N N N 42.442 -4.817 5.415 4.382 1.171 0.268 H34 EQ3 76
EQ3 H35 H35 H 0 1 N N N 39.514 -5.634 5.324 5.425 -1.661 -0.408 H35 EQ3 77
EQ3 H36 H36 H 0 1 N N N 41.254 -3.811 3.489 6.784 1.054 0.228 H36 EQ3 78
EQ3 H37 H37 H 0 1 N N N 38.393 -6.095 3.863 7.780 -2.310 -1.630 H37 EQ3 79
EQ3 H38 H38 H 0 1 N N N 37.379 -4.963 2.906 8.676 -2.711 -0.145 H38 EQ3 80
EQ3 H39 H39 H 0 1 N N N 38.279 -6.279 2.080 6.899 -2.620 -0.114 H39 EQ3 81
EQ3 H40 H40 H 0 1 N N N 40.590 -3.474 1.189 9.186 0.936 0.187 H40 EQ3 82
EQ3 H41 H41 H 0 1 N N N 37.575 -3.837 1.190 10.230 -1.886 -0.531 H41 EQ3 83
EQ3 H42 H42 H 0 1 N N N 38.693 -4.978 -1.062 10.218 2.174 -1.235 H42 EQ3 84
EQ3 H43 H43 H 0 1 N N N 37.493 -4.724 -2.375 11.395 1.954 -2.552 H43 EQ3 85
EQ3 H44 H44 H 0 1 N N N 39.247 -4.523 -2.709 10.255 0.647 -2.149 H44 EQ3 86
EQ3 H45 H45 H 0 1 N N N 38.621 -0.020 -3.311 14.755 0.287 -0.129 H45 EQ3 87
EQ3 H46 H46 H 0 1 N N N 37.081 -0.090 -2.390 14.687 1.813 0.785 H46 EQ3 88
EQ3 H47 H47 H 0 1 N N N 39.932 -0.276 -1.356 14.106 -0.159 2.208 H47 EQ3 89
EQ3 H48 H48 H 0 1 N N N 38.657 0.916 -0.932 12.747 0.984 2.064 H48 EQ3 90
EQ3 H49 H49 H 0 1 N N N 39.168 -1.219 2.062 13.933 -1.388 -0.569 H49 EQ3 91
EQ3 H50 H50 H 0 1 N N N 40.448 -0.844 0.859 14.080 -2.302 0.951 H50 EQ3 92
EQ3 H51 H51 H 0 1 N N N 39.318 0.443 1.398 12.753 -2.662 -0.179 H51 EQ3 93
EQ3 H52 H52 H 0 1 N N N 36.750 -1.232 1.345 11.190 -2.384 1.678 H52 EQ3 94
EQ3 H53 H53 H 0 1 N N N 37.013 0.446 0.762 12.417 -1.840 2.847 H53 EQ3 95
EQ3 H54 H54 H 0 1 N N N 36.332 -0.794 -0.346 11.007 -0.813 2.495 H54 EQ3 96
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
EQ3 O27 C27 DOUB N N 1
EQ3 C27 C28 SING N N 2
EQ3 C27 C26 SING N N 3
EQ3 C28 C29 SING N N 4
EQ3 C38 C26 SING N N 5
EQ3 C26 C25 DOUB N N 6
EQ3 C29 C30 SING N N 7
EQ3 C25 C30 SING N N 8
EQ3 C25 C24 SING N N 9
EQ3 C30 C39 SING N N 10
EQ3 C30 C40 SING N N 11
EQ3 C24 C23 DOUB N E 12
EQ3 C23 C22 SING N N 13
EQ3 C22 C37 SING N N 14
EQ3 C22 C21 DOUB N E 15
EQ3 C21 C20 SING N N 16
EQ3 C20 C19 DOUB N E 17
EQ3 C19 C18 SING N N 18
EQ3 C18 C36 SING N N 19
EQ3 C18 C17 DOUB N E 20
EQ3 C17 C16 SING N N 21
EQ3 C16 C15 DOUB N E 22
EQ3 C15 C14 SING N N 23
EQ3 C14 C13 DOUB N E 24
EQ3 C35 C13 SING N N 25
EQ3 C13 C12 SING N N 26
EQ3 C12 C11 DOUB N E 27
EQ3 C11 C10 SING N N 28
EQ3 C10 C9 DOUB N E 29
EQ3 C34 C9 SING N N 30
EQ3 C9 C8 SING N N 31
EQ3 C8 C7 DOUB N E 32
EQ3 C7 C6 SING N N 33
EQ3 C33 C5 SING N N 34
EQ3 C6 C5 DOUB N N 35
EQ3 C6 C1 SING N N 36
EQ3 C5 C4 SING N N 37
EQ3 C31 C1 SING N N 38
EQ3 C1 C32 SING N N 39
EQ3 C1 C2 SING N N 40
EQ3 C4 C3 SING N N 41
EQ3 C2 C3 SING N N 42
EQ3 C3 O3 SING N N 43
EQ3 C32 H1 SING N N 44
EQ3 C32 H2 SING N N 45
EQ3 C32 H3 SING N N 46
EQ3 C31 H4 SING N N 47
EQ3 C31 H5 SING N N 48
EQ3 C31 H6 SING N N 49
EQ3 C2 H7 SING N N 50
EQ3 C2 H8 SING N N 51
EQ3 C3 H9 SING N N 52
EQ3 O3 H10 SING N N 53
EQ3 C4 H11 SING N N 54
EQ3 C4 H12 SING N N 55
EQ3 C33 H13 SING N N 56
EQ3 C33 H14 SING N N 57
EQ3 C33 H15 SING N N 58
EQ3 C7 H16 SING N N 59
EQ3 C8 H17 SING N N 60
EQ3 C34 H18 SING N N 61
EQ3 C34 H19 SING N N 62
EQ3 C34 H20 SING N N 63
EQ3 C10 H21 SING N N 64
EQ3 C11 H22 SING N N 65
EQ3 C12 H23 SING N N 66
EQ3 C35 H24 SING N N 67
EQ3 C35 H25 SING N N 68
EQ3 C35 H26 SING N N 69
EQ3 C14 H27 SING N N 70
EQ3 C15 H28 SING N N 71
EQ3 C16 H29 SING N N 72
EQ3 C17 H30 SING N N 73
EQ3 C36 H31 SING N N 74
EQ3 C36 H32 SING N N 75
EQ3 C36 H33 SING N N 76
EQ3 C19 H34 SING N N 77
EQ3 C20 H35 SING N N 78
EQ3 C21 H36 SING N N 79
EQ3 C37 H37 SING N N 80
EQ3 C37 H38 SING N N 81
EQ3 C37 H39 SING N N 82
EQ3 C23 H40 SING N N 83
EQ3 C24 H41 SING N N 84
EQ3 C38 H42 SING N N 85
EQ3 C38 H43 SING N N 86
EQ3 C38 H44 SING N N 87
EQ3 C28 H45 SING N N 88
EQ3 C28 H46 SING N N 89
EQ3 C29 H47 SING N N 90
EQ3 C29 H48 SING N N 91
EQ3 C40 H49 SING N N 92
EQ3 C40 H50 SING N N 93
EQ3 C40 H51 SING N N 94
EQ3 C39 H52 SING N N 95
EQ3 C39 H53 SING N N 96
EQ3 C39 H54 SING N N 97
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
EQ3 SMILES ACDLabs 12.01 "CC1(CC(O)CC(C)=C1[C@H]=[C@H]C(C)=[C@H][C@H]=[C@H]C(C)=[C@H][C@H]=[C@H][C@H]=C(C)[C@H]=[C@H][C@H]=C(C)[C@H]=[C@H]C=2C(CCC(C=2C)=O)(C)C)C"
EQ3 InChI InChI 1.03 "InChI=1S/C40H54O2/c1-29(17-13-19-31(3)21-23-36-33(5)27-35(41)28-40(36,9)10)15-11-12-16-30(2)18-14-20-32(4)22-24-37-34(6)38(42)25-26-39(37,7)8/h11-24,35,41H,25-28H2,1-10H3/b12-11+,17-13+,18-14+,23-21+,24-22+,29-15+,30-16+,31-19+,32-20+/t35-/m1/s1"
EQ3 InChIKey InChI 1.03 ZRCXVNZZDQGBQT-BANQPSJHSA-N
EQ3 SMILES_CANONICAL CACTVS 3.385 "CC1=C(/C=C/C(C)=C/C=C/C(C)=C/C=C/C=C(C)/C=C/C=C(C)/C=C/C2=C(C)C(=O)CCC2(C)C)C(C)(C)C[C@H](O)C1"
EQ3 SMILES CACTVS 3.385 "CC1=C(C=CC(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=CC2=C(C)C(=O)CCC2(C)C)C(C)(C)C[CH](O)C1"
EQ3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC1=C(C(C[C@@H](C1)O)(C)C)/C=C/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/C2=C(C(=O)CCC2(C)C)C)/C)/C"
EQ3 SMILES "OpenEye OEToolkits" 2.0.6 "CC1=C(C(CC(C1)O)(C)C)C=CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC2=C(C(=O)CCC2(C)C)C)C)C"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
EQ3 "SYSTEMATIC NAME" ACDLabs 12.01 "(3'R)-3'-hydroxy-beta,beta-caroten-4-one"
EQ3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2,4,4-trimethyl-3-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-2-en-1-one"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
EQ3 "Create component" 2016-12-19 RCSB
EQ3 "Initial release" 2017-01-18 RCSB
EQ3 "Modify model coordinates code" 2017-01-19 RCSB
EQ3 "Modify synonyms" 2020-05-27 PDBE
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 EQ3 "3'-Hydroxyechinenone" ? ?
2 EQ3 "3'-OH-Echinenone" ? ?
#